mRNA_Ecto-sp9_F_contig11162.1001.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11162.1001.1
Unique NamemRNA_Ecto-sp9_F_contig11162.1001.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11162.1001.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT9_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 2.650e-73
Identity = 126/143 (88.11%), Postives = 129/143 (90.21%), Query Frame = 1 
Query:    1 MPQVAESPFSESLQEELRVAITILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPSPASPASPVAAA--AATPPRLAVTQSPVPSANSDGDDDDDFETEGPEWDAKKVQYGLPMGARNTYDIDDMEKMNPEEYQAALR 423
            MPQVAESPFSESLQEELRVAI ILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPSPASPAS  AA   AA PPRLAVTQSPVP+A+S       FETEGPEWDA+KVQYGLPMGARNTYDIDDMEKMNPEEYQAALR
Sbjct:    1 MPQVAESPFSESLQEELRVAIKILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPSPASPASXEAAXXXAAAPPRLAVTQSPVPNADSXXXXXXXFETEGPEWDAEKVQYGLPMGARNTYDIDDMEKMNPEEYQAALR 143
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11162.1001.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7S9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.650e-15
Identity = 50/137 (36.50%), Postives = 75/137 (54.74%), Query Frame = 1 
Query:   13 AESPFSESLQEELRVAITILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPSPASPASPVAAAAATPPRLAVTQSPVPSANSDGDDDDDFETEGPEWDAKKVQYGLPMGARNTYDIDDMEKMNPEEYQAALR 423
            A +PF++ +QE L+ AI +L+ RL+   P++R EF+RFE A+  I++DA+P       A+                                +  E+EGP WDA K  YG+P+G RN+Y ID M+ M+P++YQAALR
Sbjct:   84 AAAPFTDEMQEHLQTAINLLSRRLKSGVPLNRPEFDRFEEAIDAIIKDAVPHLA----AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMESEGPAWDASKG-YGMPVGVRNSYTIDGMDDMSPDDYQAALR 215
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11162.1001.1 vs.
Match: Hypothetical (protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZ49_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.030e-5
Identity = 46/148 (31.08%), Postives = 66/148 (44.59%), Query Frame = 1 
Query:    4 PQVAESPFSESLQEELRVAITILAARLQRE-KPMSRQEFERFESAVGVIVEDALPLQKLPSPASPASPVAAAAATPPRLAVTQSPVPSANSDGDDDDDFETE--------GPEWDAKKVQYGLPMGARNTYDIDDMEKMNPEEYQAAL 420
            P  A  P   +    +R  + +L +R+ R+ +P+ + E E F   +  I+       K  SP  P         +PP+    Q P+   N D DDD   E E          E +  +  Y +P+G RNTY I+ ME M PEEY AAL
Sbjct:   75 PVAASEPIPSAA---IRQVLEVLGSRIARDGRPLKQNELETFLKNLDSIIVSLGGSPKEYSP--PXXXXXTPRPSPPQS--NQKPISQINVDDDDDIPLEMEDDEAIAAISDERERAQAMYSMPVGVRNTYYIEGMENMTPEEYLAAL 215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11162.1001.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.650e-7388.11protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.650e-1536.50protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical5.030e-531.08protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11162contigEcto-sp9_F_contig11162:136..919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.1
Seed ortholog evalue3.2e-58
Seed eggNOG ortholog2880.D7FNT9
EggNOG OGs2EA2C@1,2SGBW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003400.1
Exons2
Model size423
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928357.193304-CDS-Ecto-sp9_F_contig11162:135..4051622928357.193304-CDS-Ecto-sp9_F_contig11162:135..405Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11162 136..405 -
1692277844.6164985-CDS-Ecto-sp9_F_contig11162:135..4051692277844.6164985-CDS-Ecto-sp9_F_contig11162:135..405Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11162 136..405 -
1622928357.2084029-CDS-Ecto-sp9_F_contig11162:766..9191622928357.2084029-CDS-Ecto-sp9_F_contig11162:766..919Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11162 767..919 -
1692277844.6258128-CDS-Ecto-sp9_F_contig11162:766..9191692277844.6258128-CDS-Ecto-sp9_F_contig11162:766..919Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11162 767..919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11162.1001.1prot_Ecto-sp9_F_contig11162.1001.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11162 136..919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11162.1001.1

>prot_Ecto-sp9_F_contig11162.1001.1 ID=prot_Ecto-sp9_F_contig11162.1001.1|Name=mRNA_Ecto-sp9_F_contig11162.1001.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=141bp
MPQVAESPFSESLQEELRVAITILAARLQREKPMSRQEFERFESAVGVIV
EDALPLQKLPSPASPASPVAAAAATPPRLAVTQSPVPSANSDGDDDDDFE
TEGPEWDAKKVQYGLPMGARNTYDIDDMEKMNPEEYQAALR
back to top

mRNA from alignment at Ecto-sp9_F_contig11162:136..919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11162.1001.1 ID=mRNA_Ecto-sp9_F_contig11162.1001.1|Name=mRNA_Ecto-sp9_F_contig11162.1001.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=784bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11162:136..919- (Ectocarpus species9 EcSCA_722f female)
ATGCCGCAAGTCGCGGAATCTCCGTTCTCGGAGAGCCTTCAGGAGGAACT
CCGAGTCGCCATCACGATCCTCGCGGCGAGGTTGCAACGAGAGAAGCCCA
TGAGCCGCCAGGAGTTCGAGAGGTTCGAGTCCGCGGTGGGCGTCATCGTC
GAGGTATAGTCTGTGGTTGTGGTGTACAAGCAAGCAGTACTCGTCGTGTG
TGCGTAAGGAGGATAGCAGTGTTGATCGGTTTTAGTATCTACCACCGTAG
ACACAACCGGTGCGAATAATGGGTGGGTGTACGTCCTATGTTGACTACTG
CCCGTCTTTCGATTCGCGCCTGCCGACTAGGCAGCTCTACTGCCTATGTA
GAACTGCTTGGATAGTTCAGTTGCGCCCGACTCTCTTTTCGGTTCAACAT
GGGATCCGTACACACAGGGTAACGACGCCAGGTTTTGAAACATCTCCCCC
GTCTCCCAGACCAACACCCCCCGCTGCCGTTCATCTTCGTCTTCTTTGGC
CGCTCTCTGTAAAGGATGCCCTTCCGTTGCAGAAGCTGCCTTCGCCGGCA
TCCCCGGCAAGCCCTGTGGCGGCGGCGGCGGCGACCCCTCCGCGACTAGC
GGTGACGCAGTCCCCCGTACCCAGCGCCAACAGCGATGGAGACGATGATG
ATGACTTCGAAACGGAGGGCCCAGAGTGGGATGCCAAAAAGGTACAGTAC
GGTCTGCCGATGGGAGCGCGGAACACGTACGACATCGACGACATGGAGAA
GATGAACCCGGAAGAGTACCAGGCAGCGCTCAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11162:136..919-

>mRNA_Ecto-sp9_F_contig11162.1001.1 ID=mRNA_Ecto-sp9_F_contig11162.1001.1|Name=mRNA_Ecto-sp9_F_contig11162.1001.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11162:136..919- (Ectocarpus species9 EcSCA_722f female)
ATGCCGCAAGTCGCGGAATCTCCGTTCTCGGAGAGCCTTCAGGAGGAACT
CCGAGTCGCCATCACGATCCTCGCGGCGAGGTTGCAACGAGAGAAGCCCA
TGAGCCGCCAGGAGTTCGAGAGGTTCGAGTCCGCGGTGGGCGTCATCGTC
GAGATGCCGCAAGTCGCGGAATCTCCGTTCTCGGAGAGCCTTCAGGAGGA
ACTCCGAGTCGCCATCACGATCCTCGCGGCGAGGTTGCAACGAGAGAAGC
CCATGAGCCGCCAGGAGTTCGAGAGGTTCGAGTCCGCGGTGGGCGTCATC
GTCGAGGATGCCCTTCCGTTGCAGAAGCTGCCTTCGCCGGCATCCCCGGC
AAGCCCTGTGGCGGCGGCGGCGGCGACCCCTCCGCGACTAGCGGTGACGC
AGTCCCCCGTACCCAGCGCCAACAGCGATGGAGACGATGATGATGACTTC
GAAACGGAGGGCCCAGAGTGGGATGCCAAAAAGGTACAGTACGGTCTGCC
GATGGGAGCGCGGAACACGTACGACATCGACGACATGGAGAAGATGAACC
CGGAAGAGTACCAGGCAGCGCTCAGGGATGCCCTTCCGTTGCAGAAGCTG
CCTTCGCCGGCATCCCCGGCAAGCCCTGTGGCGGCGGCGGCGGCGACCCC
TCCGCGACTAGCGGTGACGCAGTCCCCCGTACCCAGCGCCAACAGCGATG
GAGACGATGATGATGACTTCGAAACGGAGGGCCCAGAGTGGGATGCCAAA
AAGGTACAGTACGGTCTGCCGATGGGAGCGCGGAACACGTACGACATCGA
CGACATGGAGAAGATGAACCCGGAAGAGTACCAGGCAGCGCTCAGG
back to top