mRNA_Ecto-sp9_F_contig1114.985.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1114.985.1
Unique NamemRNA_Ecto-sp9_F_contig1114.985.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1114.985.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1114contigEcto-sp9_F_contig1114:1486..2604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size129
Cds size129
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928355.0689938-CDS-Ecto-sp9_F_contig1114:1485..15281622928355.0689938-CDS-Ecto-sp9_F_contig1114:1485..1528Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1114 1486..1528 -
1692277843.465827-CDS-Ecto-sp9_F_contig1114:1485..15281692277843.465827-CDS-Ecto-sp9_F_contig1114:1485..1528Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1114 1486..1528 -
1622928355.0851464-CDS-Ecto-sp9_F_contig1114:2518..26041622928355.0851464-CDS-Ecto-sp9_F_contig1114:2518..2604Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1114 2519..2604 -
1692277843.475702-CDS-Ecto-sp9_F_contig1114:2518..26041692277843.475702-CDS-Ecto-sp9_F_contig1114:2518..2604Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1114 2519..2604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1114.985.1prot_Ecto-sp9_F_contig1114.985.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1114 1486..2604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1114.985.1

>prot_Ecto-sp9_F_contig1114.985.1 ID=prot_Ecto-sp9_F_contig1114.985.1|Name=mRNA_Ecto-sp9_F_contig1114.985.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=43bp
MCLSLDYPERRSVHELRLQYDTAGNCGRRRSLATRRAAVGRH*
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mRNA from alignment at Ecto-sp9_F_contig1114:1486..2604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1114.985.1 ID=mRNA_Ecto-sp9_F_contig1114.985.1|Name=mRNA_Ecto-sp9_F_contig1114.985.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1119bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1114:1486..2604- (Ectocarpus species9 EcSCA_722f female)
ATGTGCCTCTCTCTCGATTACCCTGAGAGACGCTCAGTGCATGAGCTACG
CCTCCAGTACGATACGGCTGGGAATTGTGGACGAAGGTGAAAGGCCGCAG
CACAGGTGGATGTTGGATGTTCGAAAAGCGTAGCCATGCCGCAGGTTTCA
GCGGCAAGGTTAACAAGGCACCAGTGGCCAGAGGTCAGGCTGAGTGGAGG
TTGCACGCCGAACTGAGCAGCTAGTCCCGCATCTCGCATGATATGTAGTG
ACGTTAATCCAACTACTTAACACGGCGGGCTGGCACCACAGACAAACAAC
GCGTTCAAGGTCGATCAATCCCGTCTCCCCAACCTCTCCACCCCAACCTT
CACAGAGCAGGTTGTGATCGGTGTCCAACCTTCCCCTCTTCCCCCCAGTG
CACCCTTGAAAGGGGTTTTTGATCAGCACCTTCAGGCTGTTGATCTAATC
AACACCCCTCAGGTTCCTGATTGTCTATCTACCGAAAAACGCCCCTGGCG
GTTACATTGACGGATGGTCCTCACGATACCGACGCCGCCACTCGCGCCTG
TATCATTTTCAAGAGGCATAGGGCAATCATACAAAGACGCAGGAACTCGA
AGCCGAGCGCCTAATCCACGCCTCACCAGGAGCCGCACCTCCAACGCGAC
CGAGACAAGCCCCAGTCAGTACGAACGCGGCCAAGAGGCATGAGACATGA
GTCATGACTCAAAGTGACACTCAAAGTCACACGACCGAGGAAAGTCCCCA
AGCCATCACGCTGAAGGCGGAGGAGCTTGCTTGAGTACCAAAATGCGTAT
GACGCGCAAACTTGACACAAGATTGTCAAGGGCGGGCGGGCGGGGCGCGC
TGTCTGTCACCGCCCTGCCCTACCCCTTTTAGAAAAGCACTCCCTCACTT
ATCTCTACAACCAATTGAACCGCCCCAAGATCACCGATGTAACAGGGTCT
TCCAAAGCCGGATTTGTCGTTTGTCTTAGATCTGGCGTGAACATAAGCAA
GCGACCCAACCGACATCTCGGGGCTTTAGATTCAACGGCAAAACAAAACT
CGTCTGGATTTACTTCAAACTTGCAGACGAAGCTTAGCAACCCGTCGAGC
TGCTGTCGGGAGGCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1114:1486..2604-

>mRNA_Ecto-sp9_F_contig1114.985.1 ID=mRNA_Ecto-sp9_F_contig1114.985.1|Name=mRNA_Ecto-sp9_F_contig1114.985.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1114:1486..2604- (Ectocarpus species9 EcSCA_722f female)
ATGTGCCTCTCTCTCGATTACCCTGAGAGACGCTCAGTGCATGAGCTACG
CCTCCAGTACGATACGGCTGGGAATTGTGGACGAAGATGTGCCTCTCTCT
CGATTACCCTGAGAGACGCTCAGTGCATGAGCTACGCCTCCAGTACGATA
CGGCTGGGAATTGTGGACGAAGACGAAGCTTAGCAACCCGTCGAGCTGCT
GTCGGGAGGCACTGAACGAAGCTTAGCAACCCGTCGAGCTGCTGTCGGGA
GGCACTGA
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