mRNA_Ecto-sp9_F_contig11138.983.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11138.983.1
Unique NamemRNA_Ecto-sp9_F_contig11138.983.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11138.983.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ0_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 1.470e-66
Identity = 353/360 (98.06%), Postives = 357/360 (99.17%), Query Frame = 1 
Query:  178 MAKNTKAACRHPDCTKQAIFGAPGKKPEFCSHHVQDDTMVDRKNPRCGHLGCGKVASFGVAGSTKREFCGRHAPRPTMVNLVSVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMTNLRSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSVGLNTLKKRAGGRERGSSAGNGEIKLEQGAEPFVGFVTKRRRLNGLATSLAPG 1257
            MAKNT+AACRHPDCTKQAIFGAPGK+PEFCSHHVQDDTMVDRKNPRCGHLGCGKVASFGVAGSTKREFCGRHAPRPTMV+LV+VSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMTNLRSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GSVGLNTLKKRAGGRERGSSAGNGEIKLEQGAEPFVGFVTKRRRLNGLA SLAPG
Sbjct:    1 MAKNTRAACRHPDCTKQAIFGAPGKRPEFCSHHVQDDTMVDRKNPRCGHLGCGKVASFGVAGSTKREFCGRHAPRPTMVDLVNVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMTNLRSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSVGLNTLKKRAGGRERGSSAGNGEIKLEQGAEPFVGFVTKRRRLNGLAASLAPG 360
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BLAST of mRNA_Ecto-sp9_F_contig11138.983.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF5_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.940e-40
Identity = 330/371 (88.95%), Postives = 335/371 (90.30%), Query Frame = 1 
Query:  178 MAKNTKAACRHPDCTKQAIFGAPGKKPEFCSHHVQDDTMVDRKNPRCGHLGCGKVASFGVAGSTKREFCGRHAPRPTMVNLVSVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMTNLRSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSVGLNTLKKRAGGRERGSSAGNGEIKLEQGA-----------EPFVGFVTKRRRLNGLATSLAPG 1257
            MAKNT+ ACRHPDCTKQAIFGAPGKKPEFCSHHVQDDTMVDRKNP              VAGSTKREFCGRHAPR TMVNLV+VS+XXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMTN+RSK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    V L TLKKRAGG +RGSSAGNGEIKLEQGA           EPFVGFVTKRRRLNGLA SLAPG
Sbjct:    1 MAKNTRPACRHPDCTKQAIFGAPGKKPEFCSHHVQDDTMVDRKNPXXXXXXXXXXXXXXVAGSTKREFCGRHAPRSTMVNLVNVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMTNVRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLKTLKKRAGGCKRGSSAGNGEIKLEQGAILSADDPAAVAEPFVGFVTKRRRLNGLAASLAPG 371
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BLAST of mRNA_Ecto-sp9_F_contig11138.983.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL2_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 5.330e-18
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:  244 PGKKPEFCSHHVQDDTMVDRK-NPRCGHLGCGKVASFGVAGSTKREFCGRHAPRPTMVNLVSV 429
            P  KPEFC  HVQDD M+D+K N RCGH GCGKVASFG AGS KREFC  HAPR +MV+LVSV
Sbjct:    2 PCNKPEFCGRHVQDDRMIDKKKNARCGHEGCGKVASFGAAGSKKREFCAPHAPR-SMVDLVSV 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11138.983.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
EsV-1-71.470e-6698.06n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized2.940e-4088.95protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-75.330e-1873.02n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11138contigEcto-sp9_F_contig11138:1666..2922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.9
Seed ortholog evalue2.1e-57
Seed eggNOG ortholog2880.D7FUZ0
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-01_008720.1
Exons1
Model size1259
Cds size1257
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928354.9142346-CDS-Ecto-sp9_F_contig11138:1665..29221622928354.9142346-CDS-Ecto-sp9_F_contig11138:1665..2922Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11138 1666..2922 +
1692277843.4447541-CDS-Ecto-sp9_F_contig11138:1665..29221692277843.4447541-CDS-Ecto-sp9_F_contig11138:1665..2922Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11138 1666..2922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11138.983.1prot_Ecto-sp9_F_contig11138.983.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11138 1666..2922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11138.983.1

>prot_Ecto-sp9_F_contig11138.983.1 ID=prot_Ecto-sp9_F_contig11138.983.1|Name=mRNA_Ecto-sp9_F_contig11138.983.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=419bp
QRHHHDTPARHSTRTIPPTNSLHHIVDPRRQPQRAPGKYTYLERSSSIGR
HHNRLPEEEMAKNTKAACRHPDCTKQAIFGAPGKKPEFCSHHVQDDTMVD
RKNPRCGHLGCGKVASFGVAGSTKREFCGRHAPRPTMVNLVSVSKCGHPG
CTKHPSYGVEGSKQAQFCSAHAPEGMTNLRSKRCSHQGCTKQPSYGAQGT
NKAEFCLLHASPGMVDVSSRKCSHPGCTKHPSFGVDGDNRARFCLNHASP
EMVNVVRRRCKTQGCMAKPSHGAEGTKRGEFCRRHAPPGMVNVVSKRCEH
SGCSTLPSFGTDGNKTPRFCKRHAPQGTFNVFKNRCRHQDCWKETSYGEP
GNSLRVFCALHRTAGSVGLNTLKKRAGGRERGSSAGNGEIKLEQGAEPFV
GFVTKRRRLNGLATSLAPG
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mRNA from alignment at Ecto-sp9_F_contig11138:1666..2922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11138.983.1 ID=mRNA_Ecto-sp9_F_contig11138.983.1|Name=mRNA_Ecto-sp9_F_contig11138.983.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1257bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11138:1666..2922+ (Ectocarpus species9 EcSCA_722f female)
CAGCGCCACCACCACGACACGCCTGCACGACACAGCACTCGTACAATTCC
TCCAACAAACAGCCTTCACCACATAGTTGACCCTCGGCGGCAGCCACAAC
GCGCCCCCGGAAAATATACATACCTCGAGAGGAGCAGTAGTATAGGACGG
CATCATAACCGGCTCCCGGAAGAAGAAATGGCGAAGAACACAAAAGCGGC
GTGCCGTCATCCAGACTGTACCAAGCAGGCAATATTCGGTGCGCCAGGCA
AGAAACCCGAGTTCTGCAGCCATCACGTCCAGGACGACACTATGGTCGAC
AGAAAGAACCCCAGGTGCGGTCACCTAGGGTGCGGCAAAGTGGCATCGTT
CGGCGTGGCGGGTAGCACGAAACGCGAATTCTGCGGCCGGCACGCTCCCC
GCCCTACCATGGTGAACCTCGTCAGCGTTTCGAAGTGTGGTCACCCGGGC
TGCACCAAGCACCCGTCGTACGGCGTCGAAGGTAGCAAACAGGCTCAGTT
CTGCTCCGCGCACGCACCTGAAGGAATGACTAACCTTCGTTCGAAGAGAT
GCAGCCATCAAGGCTGCACCAAGCAGCCGTCGTACGGCGCCCAGGGAACA
AATAAGGCAGAGTTCTGCCTTCTTCACGCTTCCCCGGGGATGGTCGACGT
GTCCAGCAGGAAGTGCAGTCACCCAGGGTGCACAAAGCATCCGTCGTTTG
GTGTAGACGGCGACAATAGGGCCAGGTTCTGCCTCAATCACGCTTCACCG
GAGATGGTCAACGTCGTTCGCAGGCGATGCAAGACCCAAGGATGCATGGC
GAAGCCGTCACATGGGGCCGAAGGCACCAAACGGGGTGAATTCTGCCGCC
GGCACGCGCCGCCGGGTATGGTCAACGTTGTTTCCAAAAGATGCGAGCAC
TCCGGGTGCTCCACTCTCCCCTCGTTCGGCACCGACGGTAACAAAACGCC
TCGGTTCTGCAAGCGGCACGCGCCGCAGGGGACGTTCAACGTGTTCAAGA
ATAGGTGCAGGCACCAAGACTGCTGGAAAGAAACGTCGTACGGCGAGCCA
GGAAACAGCCTCAGGGTCTTCTGCGCTCTCCACCGTACAGCCGGGTCGGT
AGGTTTGAATACATTGAAGAAGAGAGCCGGCGGGCGTGAGCGTGGGAGCT
CGGCAGGGAACGGCGAAATTAAGCTAGAGCAAGGTGCGGAACCCTTCGTG
GGCTTCGTGACAAAACGAAGGAGACTGAACGGACTCGCCACAAGTTTGGC
TCCAGGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11138:1666..2922+

>mRNA_Ecto-sp9_F_contig11138.983.1 ID=mRNA_Ecto-sp9_F_contig11138.983.1|Name=mRNA_Ecto-sp9_F_contig11138.983.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2514bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11138:1666..2922+ (Ectocarpus species9 EcSCA_722f female)
CAGCGCCACCACCACGACACGCCTGCACGACACAGCACTCGTACAATTCC
TCCAACAAACAGCCTTCACCACATAGTTGACCCTCGGCGGCAGCCACAAC
GCGCCCCCGGAAAATATACATACCTCGAGAGGAGCAGTAGTATAGGACGG
CATCATAACCGGCTCCCGGAAGAAGAAATGGCGAAGAACACAAAAGCGGC
GTGCCGTCATCCAGACTGTACCAAGCAGGCAATATTCGGTGCGCCAGGCA
AGAAACCCGAGTTCTGCAGCCATCACGTCCAGGACGACACTATGGTCGAC
AGAAAGAACCCCAGGTGCGGTCACCTAGGGTGCGGCAAAGTGGCATCGTT
CGGCGTGGCGGGTAGCACGAAACGCGAATTCTGCGGCCGGCACGCTCCCC
GCCCTACCATGGTGAACCTCGTCAGCGTTTCGAAGTGTGGTCACCCGGGC
TGCACCAAGCACCCGTCGTACGGCGTCGAAGGTAGCAAACAGGCTCAGTT
CTGCTCCGCGCACGCACCTGAAGGAATGACTAACCTTCGTTCGAAGAGAT
GCAGCCATCAAGGCTGCACCAAGCAGCCGTCGTACGGCGCCCAGGGAACA
AATAAGGCAGAGTTCTGCCTTCTTCACGCTTCCCCGGGGATGGTCGACGT
GTCCAGCAGGAAGTGCAGTCACCCAGGGTGCACAAAGCATCCGTCGTTTG
GTGTAGACGGCGACAATAGGGCCAGGTTCTGCCTCAATCACGCTTCACCG
GAGATGGTCAACGTCGTTCGCAGGCGATGCAAGACCCAAGGATGCATGGC
GAAGCCGTCACATGGGGCCGAAGGCACCAAACGGGGTGAATTCTGCCGCC
GGCACGCGCCGCCGGGTATGGTCAACGTTGTTTCCAAAAGATGCGAGCAC
TCCGGGTGCTCCACTCTCCCCTCGTTCGGCACCGACGGTAACAAAACGCC
TCGGTTCTGCAAGCGGCACGCGCCGCAGGGGACGTTCAACGTGTTCAAGA
ATAGGTGCAGGCACCAAGACTGCTGGAAAGAAACGTCGTACGGCGAGCCA
GGAAACAGCCTCAGGGTCTTCTGCGCTCTCCACCGTACAGCCGGGTCGGT
AGGTTTGAATACATTGAAGAAGAGAGCCGGCGGGCGTGAGCGTGGGAGCT
CGGCAGGGAACGGCGAAATTAAGCTAGAGCAAGGTGCGGAACCCTTCGTG
GGCTTCGTGACAAAACGAAGGAGACTGAACGGACTCGCCACAAGTTTGGC
TCCAGGTCAGCGCCACCACCACGACACGCCTGCACGACACAGCACTCGTA
CAATTCCTCCAACAAACAGCCTTCACCACATAGTTGACCCTCGGCGGCAG
CCACAACGCGCCCCCGGAAAATATACATACCTCGAGAGGAGCAGTAGTAT
AGGACGGCATCATAACCGGCTCCCGGAAGAAGAAATGGCGAAGAACACAA
AAGCGGCGTGCCGTCATCCAGACTGTACCAAGCAGGCAATATTCGGTGCG
CCAGGCAAGAAACCCGAGTTCTGCAGCCATCACGTCCAGGACGACACTAT
GGTCGACAGAAAGAACCCCAGGTGCGGTCACCTAGGGTGCGGCAAAGTGG
CATCGTTCGGCGTGGCGGGTAGCACGAAACGCGAATTCTGCGGCCGGCAC
GCTCCCCGCCCTACCATGGTGAACCTCGTCAGCGTTTCGAAGTGTGGTCA
CCCGGGCTGCACCAAGCACCCGTCGTACGGCGTCGAAGGTAGCAAACAGG
CTCAGTTCTGCTCCGCGCACGCACCTGAAGGAATGACTAACCTTCGTTCG
AAGAGATGCAGCCATCAAGGCTGCACCAAGCAGCCGTCGTACGGCGCCCA
GGGAACAAATAAGGCAGAGTTCTGCCTTCTTCACGCTTCCCCGGGGATGG
TCGACGTGTCCAGCAGGAAGTGCAGTCACCCAGGGTGCACAAAGCATCCG
TCGTTTGGTGTAGACGGCGACAATAGGGCCAGGTTCTGCCTCAATCACGC
TTCACCGGAGATGGTCAACGTCGTTCGCAGGCGATGCAAGACCCAAGGAT
GCATGGCGAAGCCGTCACATGGGGCCGAAGGCACCAAACGGGGTGAATTC
TGCCGCCGGCACGCGCCGCCGGGTATGGTCAACGTTGTTTCCAAAAGATG
CGAGCACTCCGGGTGCTCCACTCTCCCCTCGTTCGGCACCGACGGTAACA
AAACGCCTCGGTTCTGCAAGCGGCACGCGCCGCAGGGGACGTTCAACGTG
TTCAAGAATAGGTGCAGGCACCAAGACTGCTGGAAAGAAACGTCGTACGG
CGAGCCAGGAAACAGCCTCAGGGTCTTCTGCGCTCTCCACCGTACAGCCG
GGTCGGTAGGTTTGAATACATTGAAGAAGAGAGCCGGCGGGCGTGAGCGT
GGGAGCTCGGCAGGGAACGGCGAAATTAAGCTAGAGCAAGGTGCGGAACC
CTTCGTGGGCTTCGTGACAAAACGAAGGAGACTGAACGGACTCGCCACAA
GTTTGGCTCCAGGT
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