mRNA_Ecto-sp9_F_contig11137.982.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11137.982.1
Unique NamemRNA_Ecto-sp9_F_contig11137.982.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11137.982.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI9_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.200e-58
Identity = 99/102 (97.06%), Postives = 99/102 (97.06%), Query Frame = 3 
Query:    3 ELHFVALEGGSLVVPAPRAGLDRAPPGTVPALLPLFFPGLRAVAPPVQVAFNPSGDRLAVLDIAGGVSIVETSEDAANASSLGRRCLSADGRSWHRVTGPTA 308
            ELHFVALEGGSLVVPAPRAGLDRAPPGTVPALLPLFFPGLRAVAPPVQV FNPSGDRLAVLDIAGGVSIVETSEDAA ASSLGRRCLSADGRSWHRVTG TA
Sbjct:  131 ELHFVALEGGSLVVPAPRAGLDRAPPGTVPALLPLFFPGLRAVAPPVQVVFNPSGDRLAVLDIAGGVSIVETSEDAAVASSLGRRCLSADGRSWHRVTGATA 232
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BLAST of mRNA_Ecto-sp9_F_contig11137.982.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 2.900e-54
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 3 
Query:    3 ELHFVALEGGSLVVPAPRAGLDRAPPGTVPALLPLFFPGLRAVAPPVQVAFNPSGDRLAVLDIAGGVSIVETSEDAANASSLGRRCLSADGRSWHRVTG 299
            ELHFV+LEGGS VVPAPRAGLDRAPPGTVPALLPLFFPGLRAVAPPVQV FNPSGDRLAVLDIAGGVSIVETSEDAANASSLGRRCLSADGRSWHRVTG
Sbjct:  358 ELHFVSLEGGSFVVPAPRAGLDRAPPGTVPALLPLFFPGLRAVAPPVQVVFNPSGDRLAVLDIAGGVSIVETSEDAANASSLGRRCLSADGRSWHRVTG 456
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11137.982.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.200e-5897.06protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized2.900e-5496.97protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11137contigEcto-sp9_F_contig11137:2208..3654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size346
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11137.982.1prot_Ecto-sp9_F_contig11137.982.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11137 2209..3654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928354.6890593-CDS-Ecto-sp9_F_contig11137:2208..22971622928354.6890593-CDS-Ecto-sp9_F_contig11137:2208..2297Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11137 2209..2297 -
1692277843.4088087-CDS-Ecto-sp9_F_contig11137:2208..22971692277843.4088087-CDS-Ecto-sp9_F_contig11137:2208..2297Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11137 2209..2297 -
1622928354.7013676-CDS-Ecto-sp9_F_contig11137:2694..28041622928354.7013676-CDS-Ecto-sp9_F_contig11137:2694..2804Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11137 2695..2804 -
1692277843.419313-CDS-Ecto-sp9_F_contig11137:2694..28041692277843.419313-CDS-Ecto-sp9_F_contig11137:2694..2804Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11137 2695..2804 -
1622928354.8053362-CDS-Ecto-sp9_F_contig11137:3508..36541622928354.8053362-CDS-Ecto-sp9_F_contig11137:3508..3654Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11137 3509..3654 -
1692277843.43314-CDS-Ecto-sp9_F_contig11137:3508..36541692277843.43314-CDS-Ecto-sp9_F_contig11137:3508..3654Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11137 3509..3654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11137.982.1

>prot_Ecto-sp9_F_contig11137.982.1 ID=prot_Ecto-sp9_F_contig11137.982.1|Name=mRNA_Ecto-sp9_F_contig11137.982.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
RSSTSWRWRGGRSWFPRRGRGWTGRPRGRCRRCCPCFSRDCELWRPLCRW
RSTRQETGWPCLTSREGSASWKLRRTPLTPHPSAAGVFPQTAAPGIALRG
PQQQQQQEGHRCLRR
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mRNA from alignment at Ecto-sp9_F_contig11137:2208..3654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11137.982.1 ID=mRNA_Ecto-sp9_F_contig11137.982.1|Name=mRNA_Ecto-sp9_F_contig11137.982.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1447bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11137:2208..3654- (Ectocarpus species9 EcSCA_722f female)
CGGAGCTCCACTTCGTGGCGCTGGAGGGGGGGTCGCTCGTGGTTCCCGCG
CCGCGGGCGGGGTTGGACAGGGCGCCCCCGGGGACGGTGCCGGCGTTGCT
GCCCTTGTTTTTCCCGGGACTGCGAGCTGTGGCGCCCCCTGTGCAGGTGG
GTGTGCAAGCATGAGCGGGAATATGGAACGTGGAAAAAAACAAATTTGCT
AGGTTGTTTCGTGGCCAAGAAGGAAAGATAATCCAGGCTGGAGCGCGCGG
CGTGGTGGCAGGAATATGGAACATGGCGGTGTTTTTTCTTGTTTATTTCA
TCATCGAAAGGAAGAAGGATAATCCAGGCAGGAATAGCATGGCCAAGTTT
TGCTTGTTAATTTCCACCGACAAGAAGAAATGATCCAGGCAGGAATGGAA
CGGCCATGCATGTAATTGCTGTTTCGTTTCATCACCAAAAAGGAAAATAA
CAAAAAATGATCCAGACAGGAATGAAAATGCCATATATTCCTTGCTTAAT
TCATTGCCAGAATGCTGAGAAACTGTATCGATGATTGATTGTTTCGGGAA
CCGCTCACGATCAAAATTTCGATCAAATGCTGATGATGGCGTCTCTCTCG
TTTTCAGTGTCCGGTGCGCCGTGAAGTGTGTGCGCGCTTTCAAACGCCCC
ACAACACGCACGCGGGTCGCAAGCAATGCTCCAGATAGGGCACGCCTTGG
TGAATGGTGTTTATTTACTCGGAGTTTCTCGCTCTCGTCGAAAACTGACC
CTGTGTTTCATGATACAGCAGTACTGCACCGCAGCACAGAAGTTGCCGGG
GGGTTTTCATGTTCATGTTTGTTTTGCGGTCATGGGGTTGTCGTTTTCAG
GTGGCGTTCAACCCGTCAGGAGACAGGCTGGCCGTGCTTGACATCGCGGG
AGGGGTCAGCATCGTGGAAACTTCGGAGGACGCCGCTAACGCCTCATCCC
TCGGCCGCAGGTATGCTATTAGAGCAGGCAGCTGCCGTTCGCGCTCTCAT
CTCTATTGTTCGTAGCAAAATACGGCAGCAAAGAGCTTAAAGCTGCATAC
GGTACACTTCAAGCAAGAGTTTGGTTCGACTGCTGCGCTCCCGTTCAAGG
TTTGAGCCAAGCCACGCTACTCTGCAGCAATACGGTAGCATGCATACACC
TAAGTTGTTTTTCAGATTCAAACGCTGCTCTCAGCTCAAGGTTTGGGCTC
GAATCGCGCTACTCTTTGCCAAAAAAACACGCTATAACTTTGTCGCGTGC
GTGTAACATTTAGGGAGGGGAGGAGGTCGTGCTTGTTTCTTCTGAGCCTT
ACCAATTCAACTCGACATTAATCACCCCCCACACACACTGTCGTCGCTAT
CCCGAAGGTGTCTTTCCGCAGACGGCCGCTCCTGGCATCGCGTTACGGGG
CCCACAGCAGCAGCAGCAGCAAGAGGGCCACCGCTGCCTGCGGAGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11137:2208..3654-

>mRNA_Ecto-sp9_F_contig11137.982.1 ID=mRNA_Ecto-sp9_F_contig11137.982.1|Name=mRNA_Ecto-sp9_F_contig11137.982.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11137:2208..3654- (Ectocarpus species9 EcSCA_722f female)
CGGAGCTCCACTTCGTGGCGCTGGAGGGGGGGTCGCTCGTGGTTCCCGCG
CCGCGGGCGGGGTTGGACAGGGCGCCCCCGGGGACGGTGCCGGCGTTGCT
GCCCTTGTTTTTCCCGGGACTGCGAGCTGTGGCGCCCCCTGTGCAGCGGA
GCTCCACTTCGTGGCGCTGGAGGGGGGGTCGCTCGTGGTTCCCGCGCCGC
GGGCGGGGTTGGACAGGGCGCCCCCGGGGACGGTGCCGGCGTTGCTGCCC
TTGTTTTTCCCGGGACTGCGAGCTGTGGCGCCCCCTGTGCAGGTGGCGTT
CAACCCGTCAGGAGACAGGCTGGCCGTGCTTGACATCGCGGGAGGGGTCA
GCATCGTGGAAACTTCGGAGGACGCCGCTAACGCCTCATCCCTCGGCCGC
AGGTGGCGTTCAACCCGTCAGGAGACAGGCTGGCCGTGCTTGACATCGCG
GGAGGGGTCAGCATCGTGGAAACTTCGGAGGACGCCGCTAACGCCTCATC
CCTCGGCCGCAGGTGTCTTTCCGCAGACGGCCGCTCCTGGCATCGCGTTA
CGGGGCCCACAGCAGCAGCAGCAGCAAGAGGGCCACCGCTGCCTGCGGAG
AGTGTCTTTCCGCAGACGGCCGCTCCTGGCATCGCGTTACGGGGCCCACA
GCAGCAGCAGCAGCAAGAGGGCCACCGCTGCCTGCGGAGA
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