mRNA_Ecto-sp9_F_contig11126.976.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11126.976.1
Unique NamemRNA_Ecto-sp9_F_contig11126.976.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11126.976.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11126contigEcto-sp9_F_contig11126:95..587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11126.976.1prot_Ecto-sp9_F_contig11126.976.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11126 135..554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928353.047808-UTR-Ecto-sp9_F_contig11126:94..1341622928353.047808-UTR-Ecto-sp9_F_contig11126:94..134Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11126 95..134 +
1692277842.8618531-UTR-Ecto-sp9_F_contig11126:94..1341692277842.8618531-UTR-Ecto-sp9_F_contig11126:94..134Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11126 95..134 +
1622928353.6508257-UTR-Ecto-sp9_F_contig11126:554..5871622928353.6508257-UTR-Ecto-sp9_F_contig11126:554..587Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11126 555..587 +
1692277842.8882575-UTR-Ecto-sp9_F_contig11126:554..5871692277842.8882575-UTR-Ecto-sp9_F_contig11126:554..587Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11126 555..587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928353.060572-CDS-Ecto-sp9_F_contig11126:134..5541622928353.060572-CDS-Ecto-sp9_F_contig11126:134..554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11126 135..554 +
1692277842.875458-CDS-Ecto-sp9_F_contig11126:134..5541692277842.875458-CDS-Ecto-sp9_F_contig11126:134..554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11126 135..554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11126.976.1

>prot_Ecto-sp9_F_contig11126.976.1 ID=prot_Ecto-sp9_F_contig11126.976.1|Name=mRNA_Ecto-sp9_F_contig11126.976.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=140bp
MWRPFDHTSLRALWTRASDADFRSLGGEPLTPFTAAESTNCTHPPEFDAG
SYKGRQFHAALARCGMTVFAAVFHVSSIGVKGHHHHHQRLRLTPPLRPPS
THEPKSHAPADTTPAAAATVASAACGGNGCQLAPPGHTQ*
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mRNA from alignment at Ecto-sp9_F_contig11126:95..587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11126.976.1 ID=mRNA_Ecto-sp9_F_contig11126.976.1|Name=mRNA_Ecto-sp9_F_contig11126.976.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=493bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11126:95..587+ (Ectocarpus species9 EcSCA_722f female)
GTTAAACGTTTAGGGCAAAAAACGGTACAGTTAGTGCTGGATGTGGCGGC
CTTTTGACCATACCAGTCTAAGGGCATTGTGGACGAGAGCAAGCGATGCA
GATTTCCGAAGCCTAGGGGGGGAGCCACTCACACCATTCACGGCAGCGGA
AAGCACCAACTGCACCCACCCACCCGAATTCGACGCTGGGTCTTATAAGG
GGAGGCAATTCCACGCGGCGCTAGCCAGGTGTGGCATGACCGTCTTTGCT
GCCGTTTTCCACGTTTCTTCCATCGGAGTCAAGGGGCACCATCACCATCA
CCAACGACTGCGCTTGACGCCGCCGCTTCGCCCGCCCAGCACCCACGAAC
CCAAATCTCACGCCCCGGCAGACACAACACCAGCAGCAGCAGCGACGGTC
GCTTCGGCTGCATGTGGGGGCAACGGATGCCAGCTTGCCCCCCCCGGACA
CACTCAGTAGTATTCGTCACGGTGGTACCATCCCTCGTGCTCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11126:95..587+

>mRNA_Ecto-sp9_F_contig11126.976.1 ID=mRNA_Ecto-sp9_F_contig11126.976.1|Name=mRNA_Ecto-sp9_F_contig11126.976.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11126:95..587+ (Ectocarpus species9 EcSCA_722f female)
ATGTGGCGGCCTTTTGACCATACCAGTCTAAGGGCATTGTGGACGAGAGC
AAGCGATGCAGATTTCCGAAGCCTAGGGGGGGAGCCACTCACACCATTCA
CGGCAGCGGAAAGCACCAACTGCACCCACCCACCCGAATTCGACGCTGGG
TCTTATAAGGGGAGGCAATTCCACGCGGCGCTAGCCAGGTGTGGCATGAC
CGTCTTTGCTGCCGTTTTCCACGTTTCTTCCATCGGAGTCAAGGGGCACC
ATCACCATCACCAACGACTGCGCTTGACGCCGCCGCTTCGCCCGCCCAGC
ACCCACGAACCCAAATCTCACGCCCCGGCAGACACAACACCAGCAGCAGC
AGCGACGGTCGCTTCGGCTGCATGTGGGGGCAACGGATGCCAGCTTGCCC
CCCCCGGACACACTCAGTAGATGTGGCGGCCTTTTGACCATACCAGTCTA
AGGGCATTGTGGACGAGAGCAAGCGATGCAGATTTCCGAAGCCTAGGGGG
GGAGCCACTCACACCATTCACGGCAGCGGAAAGCACCAACTGCACCCACC
CACCCGAATTCGACGCTGGGTCTTATAAGGGGAGGCAATTCCACGCGGCG
CTAGCCAGGTGTGGCATGACCGTCTTTGCTGCCGTTTTCCACGTTTCTTC
CATCGGAGTCAAGGGGCACCATCACCATCACCAACGACTGCGCTTGACGC
CGCCGCTTCGCCCGCCCAGCACCCACGAACCCAAATCTCACGCCCCGGCA
GACACAACACCAGCAGCAGCAGCGACGGTCGCTTCGGCTGCATGTGGGGG
CAACGGATGCCAGCTTGCCCCCCCCGGACACACTCAGTAG
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