mRNA_Ecto-sp9_F_contig11123.975.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11123.975.1
Unique NamemRNA_Ecto-sp9_F_contig11123.975.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11123.975.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP4_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 1.500e-124
Identity = 250/303 (82.51%), Postives = 257/303 (84.82%), Query Frame = 1 
Query:    1 RCSPRADRVGGQKKRRGTGVGTPARTVVGPTTMPVPASTKPPIAPPPVRRPLHARKSAFVGFPAHTSPVTTAGPTVRPSIMSSPSMPRVGGASGAAAAG---TAASRSTVGPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSDGSMAAARYATAVASNAAXXXXXXXXXMSAPVPPGQLFGTATSFSSVFQTQQLARDDMDVDPSKRERISTATAMMASALASVLQANLSLAGRPSMTKAEEEALLLQSVIADADLARAQAAMEELREAEWASNQMDVDDDEEYEGPWPMEVDG 900
            RCSPRADRVGGQKKRRG G GTPA TVVGPTTMPVPASTKPPIAPPPVRRPLHARKSAF+GFPAH SPVTTAGP VR SI+SSPSMPRVG            TAASRSTVGPAA XXXXXXXX            XXXXXXXXXXXXX PS GSMAAARYA AV     XXXXXXXXXMS+P PPGQLFG A+S+SS FQTQQLARDDMDVDPSK ERISTATA+MA ALASVLQA LSLAGRPSM+KAEEEALL QSVIADADLARAQAAMEELREAEWASNQMDVDDDEEYEGPWPMEVDG
Sbjct:   42 RCSPRADRVGGQKKRRGAGAGTPASTVVGPTTMPVPASTKPPIAPPPVRRPLHARKSAFIGFPAHPSPVTTAGPAVRLSILSSPSMPRVGXXXXXXXXXXXXTAASRSTVGPAAVXXXXXXXXAVMPPAAPSFQAXXXXXXXXXXXXXQPSQGSMAAARYAAAVXXXX-XXXXXXXXXMSSPAPPGQLFGAASSWSSAFQTQQLARDDMDVDPSKLERISTATAVMARALASVLQAKLSLAGRPSMSKAEEEALLWQSVIADADLARAQAAMEELREAEWASNQMDVDDDEEYEGPWPMEVDG 343
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11123.975.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB7_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.650e-61
Identity = 116/153 (75.82%), Postives = 124/153 (81.05%), Query Frame = 1 
Query:  442 SDGSMAAARYATAVASNAAXXXXXXXXXMSAPVPPGQLFGTATSFSSVFQTQQLARDDMDVDPSKRERISTATAMMASALASVLQANLSLAGRPSMTKAEEEALLLQSVIADADLARAQAAMEELREAEWASNQMDVDDDEEYEGPWPMEVDG 900
            S GSMAA RYA A  SNAA         MSAP PPGQL G A+S+SSVFQTQ LARDDMDVDPSKRER+  ATAM+ SALASV+QA LSLA RP +TK EE ALLLQSVI DADLA AQAAM+ELR AEWASNQM+VDDDEEYEGPWPMEVDG
Sbjct:   11 SYGSMAATRYAAAAVSNAAA--------MSAPAPPGQLLGAASSWSSVFQTQHLARDDMDVDPSKRERMCRATAMIPSALASVVQAKLSLASRPFLTKVEEAALLLQSVIGDADLASAQAAMKELRAAEWASNQMEVDDDEEYEGPWPMEVDG 155
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11123.975.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.500e-12482.51protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.650e-6175.82protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11123contigEcto-sp9_F_contig11123:1442..2959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_002820.1
Exons2
Model size903
Cds size903
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928352.8600507-CDS-Ecto-sp9_F_contig11123:1441..22661622928352.8600507-CDS-Ecto-sp9_F_contig11123:1441..2266Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11123 1442..2266 -
1692277842.8374445-CDS-Ecto-sp9_F_contig11123:1441..22661692277842.8374445-CDS-Ecto-sp9_F_contig11123:1441..2266Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11123 1442..2266 -
1622928352.9112363-CDS-Ecto-sp9_F_contig11123:2881..29591622928352.9112363-CDS-Ecto-sp9_F_contig11123:2881..2959Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11123 2882..2959 -
1692277842.848258-CDS-Ecto-sp9_F_contig11123:2881..29591692277842.848258-CDS-Ecto-sp9_F_contig11123:2881..2959Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11123 2882..2959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11123.975.1prot_Ecto-sp9_F_contig11123.975.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11123 1442..2959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11123.975.1

>prot_Ecto-sp9_F_contig11123.975.1 ID=prot_Ecto-sp9_F_contig11123.975.1|Name=mRNA_Ecto-sp9_F_contig11123.975.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=301bp
RCSPRADRVGGQKKRRGTGVGTPARTVVGPTTMPVPASTKPPIAPPPVRR
PLHARKSAFVGFPAHTSPVTTAGPTVRPSIMSSPSMPRVGGASGAAAAGT
AASRSTVGPAAVAAAATGATAVMPPAAPSFQAAAAAVMPAAVPSGQPSDG
SMAAARYATAVASNAAAAAAAAAAAMSAPVPPGQLFGTATSFSSVFQTQQ
LARDDMDVDPSKRERISTATAMMASALASVLQANLSLAGRPSMTKAEEEA
LLLQSVIADADLARAQAAMEELREAEWASNQMDVDDDEEYEGPWPMEVDG
*
back to top

mRNA from alignment at Ecto-sp9_F_contig11123:1442..2959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11123.975.1 ID=mRNA_Ecto-sp9_F_contig11123.975.1|Name=mRNA_Ecto-sp9_F_contig11123.975.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1518bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11123:1442..2959- (Ectocarpus species9 EcSCA_722f female)
AGGTGCTCACCTCGCGCGGACAGGGTCGGTGGCCAGAAGAAGAGAAGGGG
CACCGGTGTCGGAACGCCCGCCCGCACGGTACGAATGACGGTATTGTGTC
GATAAAACCACAGTCTGGTCTACTCTCTTTGGCATCCTTAGATCAACATT
GTGGAGTGGTGTGTATCTTTTCCTACCTCCAGAAAGTAGGCCAAGCTGAG
AAGCGCTTCCTACAGGCTGACAAGTCTCATTGAGATGTGCCACCCTCCCT
CTCTCCTACAGCTGCACGTTTCGTTGCAAGAACTGGGTCAATCCATAAGC
TGCTTTCCGGAGATTGGCGTCATCTGTCTGCTTAGTCTACAAATCAACAG
CAGTAGTAGCCCTTTGTGGTGTCCTTGGGGCGGGAACCAGATGATGTATC
AAGTCTGTTGCTACGTGCTGTTCATCAAACAATAATTCGTCAACAAGATG
CACCTCTCGGTTCCCATGCCTGCTTCTCTTCCACCCAATTGACGTAGTTG
CTGTTGTCAGTACCTAAAGCGGTGCTAGAAAGTCTGTCGAGAGCGCGTCT
GCGCGGAGAAAGAACAGCTACAGTTGCTGCTATACGACATGCGACTCCTC
TTCACGCCCAAGGGCCCTCCCCAGGAGTATACACCATATGCTATTCATCA
CCAACTGAAAAACGGTCCCGAATGGCCCTTCCATTATCCCCAGGTCGTTG
GTCCCACCACGATGCCAGTCCCCGCAAGCACCAAGCCTCCGATTGCTCCG
CCGCCAGTTCGTCGCCCCCTGCACGCGAGGAAGTCGGCGTTCGTCGGGTT
CCCGGCCCACACCAGCCCCGTCACTACAGCCGGACCTACCGTCCGCCCGT
CCATAATGTCCTCGCCGAGCATGCCTAGGGTGGGCGGGGCGAGCGGGGCG
GCAGCGGCGGGAACGGCAGCGTCGAGGTCGACCGTGGGGCCGGCCGCGGT
GGCGGCGGCGGCGACGGGAGCGACGGCAGTGATGCCCCCCGCCGCGCCCT
CGTTCCAAGCGGCGGCGGCGGCAGTGATGCCCGCCGCGGTGCCCTCGGGG
CAGCCCTCCGACGGATCGATGGCGGCGGCAAGGTATGCGACGGCGGTGGC
AAGCAATGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGATGTCCGCCC
CCGTGCCTCCCGGGCAGCTCTTCGGAACAGCCACCTCGTTCTCAAGCGTC
TTCCAGACGCAGCAACTCGCCCGCGATGACATGGACGTCGACCCGTCCAA
GCGCGAGCGCATATCGACGGCAACGGCGATGATGGCTAGCGCCCTGGCGT
CGGTTCTCCAGGCGAACCTGAGCCTCGCGGGCCGTCCGTCCATGACCAAG
GCCGAGGAAGAGGCCTTGCTCTTGCAGTCTGTCATCGCGGACGCGGACCT
TGCGCGTGCGCAGGCGGCGATGGAGGAGCTCCGGGAGGCAGAGTGGGCGT
CTAACCAGATGGACGTTGACGACGACGAGGAGTACGAAGGGCCGTGGCCG
ATGGAGGTGGACGGGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11123:1442..2959-

>mRNA_Ecto-sp9_F_contig11123.975.1 ID=mRNA_Ecto-sp9_F_contig11123.975.1|Name=mRNA_Ecto-sp9_F_contig11123.975.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1806bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11123:1442..2959- (Ectocarpus species9 EcSCA_722f female)
AGGTGCTCACCTCGCGCGGACAGGGTCGGTGGCCAGAAGAAGAGAAGGGG
CACCGGTGTCGGAACGCCCGCCCGCACGAGGTGCTCACCTCGCGCGGACA
GGGTCGGTGGCCAGAAGAAGAGAAGGGGCACCGGTGTCGGAACGCCCGCC
CGCACGGTCGTTGGTCCCACCACGATGCCAGTCCCCGCAAGCACCAAGCC
TCCGATTGCTCCGCCGCCAGTTCGTCGCCCCCTGCACGCGAGGAAGTCGG
CGTTCGTCGGGTTCCCGGCCCACACCAGCCCCGTCACTACAGCCGGACCT
ACCGTCCGCCCGTCCATAATGTCCTCGCCGAGCATGCCTAGGGTGGGCGG
GGCGAGCGGGGCGGCAGCGGCGGGAACGGCAGCGTCGAGGTCGACCGTGG
GGCCGGCCGCGGTGGCGGCGGCGGCGACGGGAGCGACGGCAGTGATGCCC
CCCGCCGCGCCCTCGTTCCAAGCGGCGGCGGCGGCAGTGATGCCCGCCGC
GGTGCCCTCGGGGCAGCCCTCCGACGGATCGATGGCGGCGGCAAGGTATG
CGACGGCGGTGGCAAGCAATGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCGATGTCCGCCCCCGTGCCTCCCGGGCAGCTCTTCGGAACAGCCACCTC
GTTCTCAAGCGTCTTCCAGACGCAGCAACTCGCCCGCGATGACATGGACG
TCGACCCGTCCAAGCGCGAGCGCATATCGACGGCAACGGCGATGATGGCT
AGCGCCCTGGCGTCGGTTCTCCAGGCGAACCTGAGCCTCGCGGGCCGTCC
GTCCATGACCAAGGCCGAGGAAGAGGCCTTGCTCTTGCAGTCTGTCATCG
CGGACGCGGACCTTGCGCGTGCGCAGGCGGCGATGGAGGAGCTCCGGGAG
GCAGAGTGGGCGTCTAACCAGATGGACGTTGACGACGACGAGGAGTACGA
AGGGCCGTGGCCGATGGAGGTGGACGGGTAGGTCGTTGGTCCCACCACGA
TGCCAGTCCCCGCAAGCACCAAGCCTCCGATTGCTCCGCCGCCAGTTCGT
CGCCCCCTGCACGCGAGGAAGTCGGCGTTCGTCGGGTTCCCGGCCCACAC
CAGCCCCGTCACTACAGCCGGACCTACCGTCCGCCCGTCCATAATGTCCT
CGCCGAGCATGCCTAGGGTGGGCGGGGCGAGCGGGGCGGCAGCGGCGGGA
ACGGCAGCGTCGAGGTCGACCGTGGGGCCGGCCGCGGTGGCGGCGGCGGC
GACGGGAGCGACGGCAGTGATGCCCCCCGCCGCGCCCTCGTTCCAAGCGG
CGGCGGCGGCAGTGATGCCCGCCGCGGTGCCCTCGGGGCAGCCCTCCGAC
GGATCGATGGCGGCGGCAAGGTATGCGACGGCGGTGGCAAGCAATGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGATGTCCGCCCCCGTGCCTCCCG
GGCAGCTCTTCGGAACAGCCACCTCGTTCTCAAGCGTCTTCCAGACGCAG
CAACTCGCCCGCGATGACATGGACGTCGACCCGTCCAAGCGCGAGCGCAT
ATCGACGGCAACGGCGATGATGGCTAGCGCCCTGGCGTCGGTTCTCCAGG
CGAACCTGAGCCTCGCGGGCCGTCCGTCCATGACCAAGGCCGAGGAAGAG
GCCTTGCTCTTGCAGTCTGTCATCGCGGACGCGGACCTTGCGCGTGCGCA
GGCGGCGATGGAGGAGCTCCGGGAGGCAGAGTGGGCGTCTAACCAGATGG
ACGTTGACGACGACGAGGAGTACGAAGGGCCGTGGCCGATGGAGGTGGAC
GGGTAG
back to top