mRNA_Ecto-sp9_F_contig11121.974.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11121.974.1
Unique NamemRNA_Ecto-sp9_F_contig11121.974.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Match: S-isoprenylcysteine (O-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT1_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 8.310e-63
Identity = 105/117 (89.74%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:    1 AGVSGERGEAWAAAQVAILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLATVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL 351
            AGVSGERGEAWAAAQV IL+FVLLGNLPLLGGSLE     GL    AGL TVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL
Sbjct:   79 AGVSGERGEAWAAAQVTILLFVLLGNLPLLGGSLEXXXXXGLXXXXAGLTTVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL 195
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BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE0_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 4.930e-59
Identity = 100/117 (85.47%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:    1 AGVSGERGEAWAAAQVAILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLATVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL 351
            AGVSGERGEAWAAAQV IL+FVL+GNLPLLGGS              GLATVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL
Sbjct:   66 AGVSGERGEAWAAAQVVILLFVLMGNLPLLGGSXXXXXXXXXXXXXXGLATVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL 182
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BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7I2_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.910e-30
Identity = 65/117 (55.56%), Postives = 75/117 (64.10%), Query Frame = 1 
Query:    1 AGVSGERGEAWAAAQVAILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLATVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL 351
            AG  GERGE       AIL  +++G++PLLGG                    S L LG+N SPWP+P E  VL TTGVYS+CRHPMYAGL+AFS GLGF+TDSFTRIALA LL Y L
Sbjct:  101 AGKVGERGEVLTLIPYAILALLIVGDIPLLGGPXXXXXXXXXXXXXXXXXLTSLLGLGKNLSPWPQPCENNVLITTGVYSICRHPMYAGLLAFSFGLGFATDSFTRIALAALLLYTL 217
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BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K2_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.270e-29
Identity = 61/116 (52.59%), Postives = 77/116 (66.38%), Query Frame = 1 
Query:    4 GVSGERGEAWAAAQVAILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLATVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL 351
            G  GERGE WA AQ AIL+FV +G++P++GG +  LAGPGLL GG G+       LG++ SPWP P +   LNT G+Y + RHPMY GLV   LG G  T+S  R+ LA LL +VL
Sbjct:  300 GTVGERGEEWAIAQGAILIFVAMGSIPVVGGLVMALAGPGLLAGGLGVIAAGVNGLGKSLSPWPAPIKDNELNTDGIYGVMRHPMYTGLVMVCLGFGVVTNSPLRMLLAALLAFVL 415
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BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB4_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.700e-22
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    4 GVSGERGEAWAAAQVAILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLATVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLG 288
            G  GERGE WA AQ AIL+FV +G++P++GG +  LAGPGLL GG G+       LG++ SPWP P +   LNT G+Y + RHPMY G +    G
Sbjct:  251 GTVGERGEEWAIAQGAILIFVAMGSIPVVGGLVMALAGPGLLAGGLGVIAAGVNGLGKSLSPWPAPVKDNELNTDGIYGVMRHPMYTGEIGRGRG 345
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BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU15_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.800e-22
Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:    4 GVSGERGEAWAAAQVAILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLATVSALQLGRNFSPWPEPAEGGV---LNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL 351
            G  G+RGE +  AQV +++FVL+G +P+LG  L  L GP LLL G G+A V   ++G + SPWP P        L  +G++S  RHP+Y+GL+ FS GL  STDS  R+ L  +L YVL
Sbjct:  112 GELGQRGEQYVIAQVLLVLFVLIGGVPILGDPLASLLGPSLLLTGLGVAVVGVNEMGGSLSPWPVPPSNESNKQLIKSGLFSKVRHPIYSGLLLFSAGLSISTDSANRLLLTAILLYVL 230
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BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJF5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.190e-22
Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = 1 
Query:    4 GVSGERGEAWAAAQVAILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLATVSALQLGRNFSPWPEPA--------EGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL 351
            G  G+RGE +  AQ A+++ VL+G LPL+G  L+   G G + GG G      ++LG   S WP PA        E G++  TG+YSL RHP+YAGL++   GLGF TDS  RI    LL Y L
Sbjct:  153 GTPGKRGELYFGAQTALVLLVLVGELPLVGDPLKFALGSGAIFGGVGAIIAGVVELGDQLSAWPVPATSSSSQKKEDGLIVDTGIYSLVRHPIYAGLISICGGLGFVTDSTVRIFFTILLYYCL 276
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BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX45_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 3.760e-19
Identity = 50/116 (43.10%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:    4 GVSGERGEAWAAAQVAILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLATVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL 351
            G  GERGE W     A+++ +++G++PLL G L  +AGPGLLL GA  A      LG N SPW   A    L T G Y+L RHP+Y G +  +LGL   T   +R  LA  L + L
Sbjct:  116 GTVGERGEKWVLLNAALVLLIVVGDIPLLEGPLNFVAGPGLLLAGALTALAGIRDLGTNLSPWATDAADNTLTTAGAYALVRHPIYTGELLGALGLANLTGDASRYLLAAALFWCL 231
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BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6W4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.400e-17
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   31 WAAAQVAILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLATVSALQLGR-NFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLL 339
            + A Q A+L+ +L+G++P++GG++E L GPGL++ G G      L LG  N +P+  P EG  L TTG +S  RHP+Y GL+  + GL  +T+SF R+ +  LL
Sbjct:   99 YVAGQAALLLLLLVGDVPVVGGAIETLLGPGLVVAGIGAIAKGVLDLGAGNLTPFAAPVEGNELKTTGAFSYVRHPIYGGLLVAAGGLSVATESFQRLLVVFLL 202
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BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Match: Uncharacterized (protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y2F1_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 4.020e-17
Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 1 
Query:   13 GERGEAWAAAQV---AILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLATVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL 351
            G RGEAW A Q+   A+L F   G    +  +  ILA     LGGA + + +A +LG N +P P P E   L TTG+Y  CRHP+YAGL+ F+LGL  ++ S TR+A+   L +VL
Sbjct:   74 GTRGEAWVAGQLVLCALLAFPPAGLTSFIDTAAVILA-----LGGAAVFSYAAYELGDNLTPLPAPREDAKLVTTGLYGYCRHPIYAGLLVFALGLSVASHSETRLAITAALFWVL 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11121.974.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
S-isoprenylcysteine8.310e-6389.74O-methyltransferase n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized4.930e-5985.47protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.910e-3055.56protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized9.270e-2952.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.700e-2250.53protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Hypothetical2.800e-2246.22protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Hypothetical8.190e-2244.35protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical3.760e-1943.10protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical2.400e-1742.31protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Uncharacterized4.020e-1743.97protein n=1 Tax=Edaphochlamys debaryana TaxID=4728... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11121contigEcto-sp9_F_contig11121:1792..3952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog35128.Thaps36679
EggNOG free text desc.Isoprenylcysteine carboxyl methyltransferase (ICMT) family
EggNOG OGs2CV5T@1,2RRCD@2759,2XDHS@2836
Ec32 ortholog descriptionPhospholipid methyltransferase
Ec32 orthologEc-18_002350.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928352.8010535-CDS-Ecto-sp9_F_contig11121:1791..19851622928352.8010535-CDS-Ecto-sp9_F_contig11121:1791..1985Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11121 1792..1985 -
1692277842.8146613-CDS-Ecto-sp9_F_contig11121:1791..19851692277842.8146613-CDS-Ecto-sp9_F_contig11121:1791..1985Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11121 1792..1985 -
1622928352.8135018-CDS-Ecto-sp9_F_contig11121:3795..39521622928352.8135018-CDS-Ecto-sp9_F_contig11121:3795..3952Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11121 3796..3952 -
1692277842.8273046-CDS-Ecto-sp9_F_contig11121:3795..39521692277842.8273046-CDS-Ecto-sp9_F_contig11121:3795..3952Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11121 3796..3952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11121.974.1prot_Ecto-sp9_F_contig11121.974.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11121 1792..3952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11121.974.1

>prot_Ecto-sp9_F_contig11121.974.1 ID=prot_Ecto-sp9_F_contig11121.974.1|Name=mRNA_Ecto-sp9_F_contig11121.974.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=117bp
AGVSGERGEAWAAAQVAILVFVLLGNLPLLGGSLEILAGPGLLLGGAGLA
TVSALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFS
TDSFTRIALACLLGYVL
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mRNA from alignment at Ecto-sp9_F_contig11121:1792..3952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11121.974.1 ID=mRNA_Ecto-sp9_F_contig11121.974.1|Name=mRNA_Ecto-sp9_F_contig11121.974.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2161bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11121:1792..3952- (Ectocarpus species9 EcSCA_722f female)
GCGGGGGTGTCGGGGGAGAGGGGAGAGGCGTGGGCGGCGGCGCAGGTGGC
CATCCTCGTTTTCGTTCTCCTGGGCAACCTTCCCCTCCTCGGCGGTTCGT
TGGAGATACTCGCGGGACCCGGGTTGCTGCTCGGCGGTGCCGGGCTGGCT
ACTGTTAGTGAGTTGCTGTACATACCATGTTGGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTCATGACATTTATAACCGTTCCGATCTCTCTACCCAT
TGCCTCCATCTGCCCGTACTAGTATAACACTTGACGCGGTCGATTCCCGT
GGTCACAGGCTAACTTACCCAAAAAACGTGCCATAAAATTAGATGGACCC
GAAGGCTCCGCAAGTCAATAGAAATCAACGACAGGTAGCCTAGAACCCTC
CGCTCGCCTCTGGTACACGCTATGCGAGGTACACATAGACTGGAAGAAAA
AGAAAAAATCGTAACAAGAACCTGGTGACTCTGTGAAGAGACTTATCAAA
AGGTCGCCTTGTTCGTACGTAAGCTGGTGACTCTGTGAAGAGACTATCAA
AAGGTCGCTCTGTACGTACGTAAGCTGGTGGTTCTTGTGAAGAGACTATC
AAAAGGTCGCTTTGTACGTACCATACGGCATGTGCATTGTAATGGCGTGT
GCTTTTTTGTGTTTGTTGTTTTGATCCTTTCGTTTTTGACGGAACCGCCG
CACGACGACGAGTTGTTTTTTTCTTGTTCTGTTGTGTATGGTGCGGTGGG
ATTCTAGAGCGGTACGGTAGCGTGTTGGGGGGGGGGATCGAAACGATCCG
GCTAGAACCGCGGGGCGGCTCTCTGAACCGGTTTAAGAATCGTGTGGCAG
ATGGTTACACTTGATATGCAGGTGAAACATAGCCTAGTAAAGAACCTCGC
TTCGAGGTATGAAGCGCTTCTAGCGTGGGCTCATAATTTGCAGGCCTCGC
TTGGTGTGGGCATAGTTGATTCCCCGCTGACGTTTGTTGACCAGTTTGAG
AGGCGCAGCAGACGCATGCTGACAAGTGTCGTCGAGCACATGCCCCTTGG
AGTCGATTGGACGATGCCTCCACGAGCTAACGTCGGCCCAGTCAGATCAA
GCCGCACATGCTGTCCTGGGAGACGCGCACGACTGCTGCCGTGCGGTGTT
TAAGTTAGAGTGGCGCCACGAACCGGCGAAGGAACGACCTTGAACGCCTT
TCAGATTGTGCGGCAGACTTGTTCCATTGTACATAGTAAGGTCCCTGACG
TTTGGTTGATGATAACGCTAGACCTACAGGCAACTTATGCACCTTCTTTT
TTTTTTCCCGCCGTTACTGATTGGTCGGCACATCCTTTTTGACGGCTTCG
AAATTATCACGACAACGCGGGATCCGCCACCTCCCTTTACCAACGGATGA
CGTACGGAAACAAACCCAAACAGCTCCCAACTTGCTCCCCCCGCTACGAT
GACGGACTCGAGCTTTCCACCTACATGTACCTGCTACGACCAACTAACGC
CACCTCCCTGTGTAAAAACCTATTCTGATGTTTCCCTGGTTAGCACCAGC
TAGCATCATCAATGATACGAATGCAAATTAATAGACTCAAGATATGCCCA
TTCCAGCCTATTTTCTCCCACTCACCGCCGTAAAGACTTGAACGACACAA
TCTAACTCTTGGAGTTACTTGAGGGTATTGCATATGTCGAACGCGTACTT
CTTTGCTGCTTCTTTGTGTGATTGTATGCATATGCATATTTCAGTAGTCT
ACGCAGCAAAATCGATTAAGCAAACATATGGGATAAAGTATTCAATCCGT
GCTTTGGGGTTAGGGTTAGGGTCTGCGTGCCCCCTCCCTATTCTTTTTCT
AGATACTCTTCAAATCCCGTGTAGGCGGTCCGGTCCGCATATGTTCATCT
GGAAGGGGTACTCAAACAAAACCCTATATAACCCTCTCTGTCATTGGATG
AAAAAAAAAAAACGCAGGCGCTCTGCAGCTCGGCAGGAACTTCTCGCCGT
GGCCGGAGCCGGCGGAGGGAGGCGTCCTCAACACCACGGGCGTGTACTCG
CTCTGCCGCCACCCCATGTACGCGGGTCTGGTGGCGTTCTCTCTCGGGCT
GGGGTTCTCGACGGACTCGTTCACCCGCATCGCTCTCGCCTGCCTCCTGG
GCTACGTGCTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11121:1792..3952-

>mRNA_Ecto-sp9_F_contig11121.974.1 ID=mRNA_Ecto-sp9_F_contig11121.974.1|Name=mRNA_Ecto-sp9_F_contig11121.974.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11121:1792..3952- (Ectocarpus species9 EcSCA_722f female)
GCGGGGGTGTCGGGGGAGAGGGGAGAGGCGTGGGCGGCGGCGCAGGTGGC
CATCCTCGTTTTCGTTCTCCTGGGCAACCTTCCCCTCCTCGGCGGTTCGT
TGGAGATACTCGCGGGACCCGGGTTGCTGCTCGGCGGTGCCGGGCTGGCT
ACTGTTAGCGGGGGTGTCGGGGGAGAGGGGAGAGGCGTGGGCGGCGGCGC
AGGTGGCCATCCTCGTTTTCGTTCTCCTGGGCAACCTTCCCCTCCTCGGC
GGTTCGTTGGAGATACTCGCGGGACCCGGGTTGCTGCTCGGCGGTGCCGG
GCTGGCTACTGTTAGCGCTCTGCAGCTCGGCAGGAACTTCTCGCCGTGGC
CGGAGCCGGCGGAGGGAGGCGTCCTCAACACCACGGGCGTGTACTCGCTC
TGCCGCCACCCCATGTACGCGGGTCTGGTGGCGTTCTCTCTCGGGCTGGG
GTTCTCGACGGACTCGTTCACCCGCATCGCTCTCGCCTGCCTCCTGGGCT
ACGTGCTGGCGCTCTGCAGCTCGGCAGGAACTTCTCGCCGTGGCCGGAGC
CGGCGGAGGGAGGCGTCCTCAACACCACGGGCGTGTACTCGCTCTGCCGC
CACCCCATGTACGCGGGTCTGGTGGCGTTCTCTCTCGGGCTGGGGTTCTC
GACGGACTCGTTCACCCGCATCGCTCTCGCCTGCCTCCTGGGCTACGTGC
TG
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