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Homology
BLAST of mRNA_Ecto-sp9_F_contig11118.968.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS02_ECTSI) HSP 1 Score: 395 bits (1016), Expect = 8.000e-128 Identity = 428/453 (94.48%), Postives = 430/453 (94.92%), Query Frame = 1
Query: 1 RYLPNAKFLVHVEVDMPERLMREVLRASGWRTRFIVYEIVAKLFDAPIKPGVVPAPTGRSPAVAAAANLKLREAAEEKLAAXXXXXXXXXXXXXXXXXXXXXXIDLDTARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKFLPAKNTKPSSLYFKTGTSAAGASYYKAGATAAAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAXXXXXXXXXVKPEAAEGE--SATPTGGGTLSRGSFPLDAGESYAAAAGTEVGSGASPKSDGNSSSSSSKGKFSLLAKRMPVKAKQLRVKDKAMILRHAFWKDVWPHL 1353
RYLPNAKFLVHVEVDMPERLMREVLRASGWRTRFIVYEIVAKLFDAP KPGVVPAPTGRSPAVAAAANLKLREAAEEKLA XXXXXXXXXXXXXXXXXXXXX IDL+TARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKFLPAKNTKPSSLY+KTGTSAAGASYYKAGATAAAH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX SATPTGGGTLSR SFPLDAGESYAAAAGTEVGSGASPKSDGNSSSSSSKGKFSLLAKRMPVKAKQLRVKDKAMILRHAFWKDVWPHL
Sbjct: 87 RYLPNAKFLVHVEVDMPERLMREVLRASGWRTRFIVYEIVAKLFDAPTKPGVVPAPTGRSPAVAAAANLKLREAAEEKLAXXXXXXXXXXXXXXXXXXXXXXDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKFLPAKNTKPSSLYYKTGTSAAGASYYKAGATAAAHAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATPTGGGTLSRESFPLDAGESYAAAAGTEVGSGASPKSDGNSSSSSSKGKFSLLAKRMPVKAKQLRVKDKAMILRHAFWKDVWPHL 539
BLAST of mRNA_Ecto-sp9_F_contig11118.968.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ2_9PHAE) HSP 1 Score: 220 bits (560), Expect = 4.440e-67 Identity = 137/145 (94.48%), Postives = 139/145 (95.86%), Query Frame = 1
Query: 46 MPERLMREVLRASGWRTRFIVYEIVAKLFDAPIKPGVVPAPTGRSPAVAAAANLKLREAAEEKLAAXXXXXXXXXXXXXXXXXXXXXXIDLDTARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKFLP 480
MPERLMREV+RASGWRTRFIVYEIVAKLFDAPIKPGVVP PTGRSPAVAAAANLKLREAAEEKLAA XXXXXXXXXXXXXXXXXXX IDL+TARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTK P
Sbjct: 1 MPERLMREVVRASGWRTRFIVYEIVAKLFDAPIKPGVVPTPTGRSPAVAAAANLKLREAAEEKLAAKRXXXXXXXXXXXXXXXXXXXDIDLETARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTKVSP 145
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-08_001560.1 |
| Exons | 4 |
| Model size | 1353 |
| Cds size | 1353 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928351.7526767-CDS-Ecto-sp9_F_contig11118:139..502 | 1622928351.7526767-CDS-Ecto-sp9_F_contig11118:139..502 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11118 140..502 + |
| 1692277842.3790169-CDS-Ecto-sp9_F_contig11118:139..502 | 1692277842.3790169-CDS-Ecto-sp9_F_contig11118:139..502 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11118 140..502 + |
| 1622928351.765528-CDS-Ecto-sp9_F_contig11118:901..1009 | 1622928351.765528-CDS-Ecto-sp9_F_contig11118:901..1009 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11118 902..1009 + |
| 1692277842.3871312-CDS-Ecto-sp9_F_contig11118:901..1009 | 1692277842.3871312-CDS-Ecto-sp9_F_contig11118:901..1009 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11118 902..1009 + |
| 1622928351.7773929-CDS-Ecto-sp9_F_contig11118:1644..2328 | 1622928351.7773929-CDS-Ecto-sp9_F_contig11118:1644..2328 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11118 1645..2328 + |
| 1692277842.3973923-CDS-Ecto-sp9_F_contig11118:1644..2328 | 1692277842.3973923-CDS-Ecto-sp9_F_contig11118:1644..2328 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11118 1645..2328 + |
| 1622928351.7921364-CDS-Ecto-sp9_F_contig11118:3141..3339 | 1622928351.7921364-CDS-Ecto-sp9_F_contig11118:3141..3339 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11118 3142..3339 + |
| 1692277842.4148157-CDS-Ecto-sp9_F_contig11118:3141..3339 | 1692277842.4148157-CDS-Ecto-sp9_F_contig11118:3141..3339 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig11118 3142..3339 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11118.968.1 >prot_Ecto-sp9_F_contig11118.968.1 ID=prot_Ecto-sp9_F_contig11118.968.1|Name=mRNA_Ecto-sp9_F_contig11118.968.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=451bp
RYLPNAKFLVHVEVDMPERLMREVLRASGWRTRFIVYEIVAKLFDAPIKP GVVPAPTGRSPAVAAAANLKLREAAEEKLAAKRERREAAAAEGKGGGDEE DDDIDLDTARALIAAEVPLMEMSHPHVRGSVIAGELIGATFAKNFGRDGM WEGTVTKFLPAKNTKPSSLYFKTGTSAAGASYYKAGATAAAHAAVAAAAA AAAAAAANLKAKAKAKPPCAAGVKTSSTATTPASASATPAAAAAATPAPA PAPAPAPAASAGVLGRKRLRIQVDSYSPSPLAVSPAPKAAGGRSTKGKGK GKEKGRAAAVVESRSPNERGGGKAGGRGVSVKAEAERPKKRRRSAAGGAT GGGVGVKPEAAEGESATPTGGGTLSRGSFPLDAGESYAAAAGTEVGSGAS PKSDGNSSSSSSKGKFSLLAKRMPVKAKQLRVKDKAMILRHAFWKDVWPH L back to topmRNA from alignment at Ecto-sp9_F_contig11118:140..3339+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig11118.968.1 ID=mRNA_Ecto-sp9_F_contig11118.968.1|Name=mRNA_Ecto-sp9_F_contig11118.968.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3200bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11118:140..3339+ (Ectocarpus species9 EcSCA_722f female) AGGTACCTGCCCAACGCCAAATTCCTGGTGCACGTGGAGGTCGATATGCC
GGAGCGGCTCATGCGGGAGGTGCTCCGGGCGAGCGGGTGGCGGACTCGCT
TCATCGTGTACGAGATAGTGGCCAAGCTGTTCGACGCTCCCATCAAGCCC
GGGGTGGTGCCGGCGCCGACGGGACGCTCCCCCGCCGTCGCCGCGGCCGC
GAACCTGAAGCTTAGGGAGGCGGCGGAGGAGAAGCTTGCGGCCAAGAGGG
AGAGGAGGGAAGCGGCGGCGGCGGAGGGGAAGGGGGGCGGCGATGAGGAG
GACGACGATATCGACTTGGACACGGCTAGGGCTCTGATCGCGGCCGAGGT
TCCGCTGATGGAGGTAGGTGGTAGGTGGCCGTGGTGCCCTTGGTCTTTAT
TGTGGATAAAAGATGATGATCGCTTCATCGTTTCCGTCAGGGGAAAAACT
GTGAAGACGTTGTCGGCTGCTTTTGCCCTCACGCTCAGTTGTTGCTTGGG
TGCTGGCTGCCCGAACGCCTCACGCTAACTTCGGTCGTGTTCGGGTGCTA
CAGTAGGTCTGCGGTCGCGATGGCTTACGTCATGAATTTGTGGTCACGAC
TATCCCCCCGGTGATCGGTCCTGTGGGAAAGAACAATCCTCCGTCCTCTC
GAGGACGCGTTGTCAATGGTCTAACAGCTAAGGCATACAAAGCATGAGTA
CCCCCCCCCCCCTCCCGCCATAAGCTTGGACACACGCCTCCCCCTACCGC
CCGATCGCACAGATGTCGCACCCGCACGTCCGGGGCTCCGTGATCGCGGG
TGAGCTGATCGGAGCCACGTTCGCCAAGAACTTCGGGCGCGACGGCATGT
GGGAAGGGACGGTGACGAAGGTGAGCACCTTGTAGAAGAAAAGGGGGCCC
CGCGTACTGCTGTGCCGAAGGGGGGGGGGTCCCGCACGTGAATCCCACGA
CAGAAGGGGGGGTTCGAAAATGTAGGCGAGGCGTGAGCACGCAGAAAGTG
TGGTTTTGGGGCGCTATGTAAAGTACATGTGTGTACGCTTTCATGGTACT
CGACGGTCAGGCTGTTGGTGTGCGTTTTGGTTTTGGGGGTTGAACCTGGC
GAACTGCTGTCAGTAGTTGGGGCCGCACACTACCCCTAGGGTGAAGGTCA
GGGAGGGGTGTCGAGTCGGCGGTGTGCAACCGCGGAGCCCCCGGTCGAGG
TTGTGAGCGTTTCGCTCGCTCTCTCTCTCTCTCGTTCCTGCGGTAGTATT
ATTCCCTCTCTCGCCATCTACTGTACGGGCGCGCACACGCACACACACAA
ATTAGCCGCGTGGGGGAGGAGAGAGTATAGCCGCACGGAGGGCATTCAGG
GGCGCGCTTACGCCTGGCTTGCTCCAAACCGCGCGCATTGCTTCCGGGCC
CGGACCCAGAAAACGGTTTGCTCTTGAGCGGCTGCCGTGATGAACCAATC
CCCTGACCGAAAGCACCCCCATTTTACCCGATCGACCAACACAACAAAAT
ATCAGTTCCTGCCTGCCAAGAACACCAAGCCGTCGTCGCTGTACTTCAAG
ACCGGGACCAGCGCTGCCGGCGCGTCGTACTACAAGGCCGGAGCCACCGC
CGCCGCGCACGCAGCAGTCGCCGCCGCCGCCGCCGCCGCTGCTGCCGCCG
CCGCGAATCTTAAGGCCAAGGCCAAGGCCAAGCCCCCGTGCGCTGCCGGA
GTAAAGACCAGCAGCACCGCTACTACCCCCGCCTCCGCGTCCGCTACCCC
GGCCGCCGCTGCCGCTGCAACCCCGGCACCTGCCCCCGCCCCCGCCCCCG
CCCCCGCCGCTTCCGCCGGCGTTCTCGGCAGAAAGCGGCTCAGGATCCAG
GTGGACAGCTACTCGCCGTCGCCCCTCGCTGTTTCTCCGGCGCCTAAGGC
GGCGGGCGGGAGGTCTACGAAGGGGAAGGGGAAGGGGAAGGAGAAGGGGA
GGGCAGCGGCGGTGGTCGAGTCACGGAGCCCCAATGAGAGAGGGGGGGGC
AAGGCCGGCGGCCGTGGGGTGAGCGTCAAGGCAGAGGCCGAGCGCCCCAA
GAAGCGGAGGCGTTCTGCTGCCGGGGGGGCGACGGGAGGGGGGGTGGGGG
TCAAGCCGGAGGCGGCGGAGGGGGAATCCGCCACCCCTACCGGCGGAGGG
ACGCTGTCGAGAGGGTCGTTCCCCCTGGATGCGGGAGAGGTGGGTGATTT
CCTCTCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTCGTCGTCGTGGTCATGGTGGTGATGGTGGTGGTCTATGGCTGTGGAGT
GTCTTGTGCAAGTAGACTCTTTTGTCGTGTTGCTCCCGATAGGCGTCGCC
ACGGTGGTGCGGCACATTGTTGAAGCGGTCATGACTTTCGCGATGGCGCG
GGAAGGAGAGGAGAGGAAGGGGGGGGGGAGGGGGGGGGGAGGCGCGAACT
ATGTATCGTCCGCGTGCATCGCAGGGTAGGTAGGTACGTTTTTTGCCTCC
GACACCGGCGTGAGGAAGCTTTGAAGGTGTCTCCGATGGCGATTGTTTGA
ACCACCTATTGCACCGTCTTGGAGACATTGCACGACAACCTTGCCCCGTG
TCGGTCAGCATTGATTGCACATGGCCCTGAGCACTCCCCCCCCCCCCCCT
TTGGACAAATAGTTTATGTCTGTCTGTTGGTACCCCTCCGTCAATCACCA
ATCGCCAAAACCGGTGGTGTGCTCATGCTTTTGGCTCATGTACGTCCTCC
CCCAAACCAAAAATTAGAACATGAGAATAGTACTACCGTGTATACATTTA
AACAAACAAGCAAAAAATGTTTAATAAAAAGCTCAACCAATGTTACTGTT
TGTTATTTGCCCTTTTAGTTTTGGGGAGGACATACCTACACACGGACACA
AAGTTCGCGTTTACTTTTTTTTGTTTTCCGGACGTCGCGCGATTTTTTGT
TTTTATGTTCTTATTTCTTGCCTCCGTTTTCTGTGGTCACCGTCTGTAGC
AGAGCTATGCCGCCGCTGCCGGCACCGAAGTCGGCTCAGGTGCTTCGCCG
AAAAGCGATGGCAACAGCAGCAGCAGCAGCAGCAAGGGGAAGTTCAGCCT
GCTCGCGAAACGGATGCCTGTTAAGGCGAAGCAGCTGAGGGTCAAGGATA
AGGCCATGATCCTCAGACACGCATTCTGGAAGGACGTGTGGCCCCACCTG
back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig11118:140..3339+ >mRNA_Ecto-sp9_F_contig11118.968.1 ID=mRNA_Ecto-sp9_F_contig11118.968.1|Name=mRNA_Ecto-sp9_F_contig11118.968.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2706bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11118:140..3339+ (Ectocarpus species9 EcSCA_722f female) AGGTACCTGCCCAACGCCAAATTCCTGGTGCACGTGGAGGTCGATATGCC GGAGCGGCTCATGCGGGAGGTGCTCCGGGCGAGCGGGTGGCGGACTCGCT TCATCGTGTACGAGATAGTGGCCAAGCTGTTCGACGCTCCCATCAAGCCC GGGGTGGTGCCGGCGCCGACGGGACGCTCCCCCGCCGTCGCCGCGGCCGC GAACCTGAAGCTTAGGGAGGCGGCGGAGGAGAAGCTTGCGGCCAAGAGGG AGAGGAGGGAAGCGGCGGCGGCGGAGGGGAAGGGGGGCGGCGATGAGGAG GACGACGATATCGACTTGGACACGGCTAGGGCTCTGATCGCGGCCGAGGT TCCGCTGATGGAGAGGTACCTGCCCAACGCCAAATTCCTGGTGCACGTGG AGGTCGATATGCCGGAGCGGCTCATGCGGGAGGTGCTCCGGGCGAGCGGG TGGCGGACTCGCTTCATCGTGTACGAGATAGTGGCCAAGCTGTTCGACGC TCCCATCAAGCCCGGGGTGGTGCCGGCGCCGACGGGACGCTCCCCCGCCG TCGCCGCGGCCGCGAACCTGAAGCTTAGGGAGGCGGCGGAGGAGAAGCTT GCGGCCAAGAGGGAGAGGAGGGAAGCGGCGGCGGCGGAGGGGAAGGGGGG CGGCGATGAGGAGGACGACGATATCGACTTGGACACGGCTAGGGCTCTGA TCGCGGCCGAGGTTCCGCTGATGGAGATGTCGCACCCGCACGTCCGGGGC TCCGTGATCGCGGGTGAGCTGATCGGAGCCACGTTCGCCAAGAACTTCGG GCGCGACGGCATGTGGGAAGGGACGGTGACGAAGATGTCGCACCCGCACG TCCGGGGCTCCGTGATCGCGGGTGAGCTGATCGGAGCCACGTTCGCCAAG AACTTCGGGCGCGACGGCATGTGGGAAGGGACGGTGACGAAGTTCCTGCC TGCCAAGAACACCAAGCCGTCGTCGCTGTACTTCAAGACCGGGACCAGCG CTGCCGGCGCGTCGTACTACAAGGCCGGAGCCACCGCCGCCGCGCACGCA GCAGTCGCCGCCGCCGCCGCCGCCGCTGCTGCCGCCGCCGCGAATCTTAA GGCCAAGGCCAAGGCCAAGCCCCCGTGCGCTGCCGGAGTAAAGACCAGCA GCACCGCTACTACCCCCGCCTCCGCGTCCGCTACCCCGGCCGCCGCTGCC GCTGCAACCCCGGCACCTGCCCCCGCCCCCGCCCCCGCCCCCGCCGCTTC CGCCGGCGTTCTCGGCAGAAAGCGGCTCAGGATCCAGGTGGACAGCTACT CGCCGTCGCCCCTCGCTGTTTCTCCGGCGCCTAAGGCGGCGGGCGGGAGG TCTACGAAGGGGAAGGGGAAGGGGAAGGAGAAGGGGAGGGCAGCGGCGGT GGTCGAGTCACGGAGCCCCAATGAGAGAGGGGGGGGCAAGGCCGGCGGCC GTGGGGTGAGCGTCAAGGCAGAGGCCGAGCGCCCCAAGAAGCGGAGGCGT TCTGCTGCCGGGGGGGCGACGGGAGGGGGGGTGGGGGTCAAGCCGGAGGC GGCGGAGGGGGAATCCGCCACCCCTACCGGCGGAGGGACGCTGTCGAGAG GGTCGTTCCCCCTGGATGCGGGAGAGTTCCTGCCTGCCAAGAACACCAAG CCGTCGTCGCTGTACTTCAAGACCGGGACCAGCGCTGCCGGCGCGTCGTA CTACAAGGCCGGAGCCACCGCCGCCGCGCACGCAGCAGTCGCCGCCGCCG CCGCCGCCGCTGCTGCCGCCGCCGCGAATCTTAAGGCCAAGGCCAAGGCC AAGCCCCCGTGCGCTGCCGGAGTAAAGACCAGCAGCACCGCTACTACCCC CGCCTCCGCGTCCGCTACCCCGGCCGCCGCTGCCGCTGCAACCCCGGCAC CTGCCCCCGCCCCCGCCCCCGCCCCCGCCGCTTCCGCCGGCGTTCTCGGC AGAAAGCGGCTCAGGATCCAGGTGGACAGCTACTCGCCGTCGCCCCTCGC TGTTTCTCCGGCGCCTAAGGCGGCGGGCGGGAGGTCTACGAAGGGGAAGG GGAAGGGGAAGGAGAAGGGGAGGGCAGCGGCGGTGGTCGAGTCACGGAGC CCCAATGAGAGAGGGGGGGGCAAGGCCGGCGGCCGTGGGGTGAGCGTCAA GGCAGAGGCCGAGCGCCCCAAGAAGCGGAGGCGTTCTGCTGCCGGGGGGG CGACGGGAGGGGGGGTGGGGGTCAAGCCGGAGGCGGCGGAGGGGGAATCC GCCACCCCTACCGGCGGAGGGACGCTGTCGAGAGGGTCGTTCCCCCTGGA TGCGGGAGAGAGCTATGCCGCCGCTGCCGGCACCGAAGTCGGCTCAGGTG CTTCGCCGAAAAGCGATGGCAACAGCAGCAGCAGCAGCAGCAAGGGGAAG TTCAGCCTGCTCGCGAAACGGATGCCTGTTAAGGCGAAGCAGCTGAGGGT CAAGGATAAGGCCATGATCCTCAGACACGCATTCTGGAAGGACGTGTGGC CCCACCTGAGCTATGCCGCCGCTGCCGGCACCGAAGTCGGCTCAGGTGCT TCGCCGAAAAGCGATGGCAACAGCAGCAGCAGCAGCAGCAAGGGGAAGTT CAGCCTGCTCGCGAAACGGATGCCTGTTAAGGCGAAGCAGCTGAGGGTCA AGGATAAGGCCATGATCCTCAGACACGCATTCTGGAAGGACGTGTGGCCC CACCTG back to top
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