mRNA_Ecto-sp9_F_contig11114.966.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11114.966.1
Unique NamemRNA_Ecto-sp9_F_contig11114.966.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11114.966.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11114contigEcto-sp9_F_contig11114:1396..3717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11114.966.1prot_Ecto-sp9_F_contig11114.966.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11114 1399..3717 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928351.474865-UTR-Ecto-sp9_F_contig11114:1395..13981622928351.474865-UTR-Ecto-sp9_F_contig11114:1395..1398Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11114 1396..1398 +
1692277842.298666-UTR-Ecto-sp9_F_contig11114:1395..13981692277842.298666-UTR-Ecto-sp9_F_contig11114:1395..1398Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11114 1396..1398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928351.585095-CDS-Ecto-sp9_F_contig11114:1398..14751622928351.585095-CDS-Ecto-sp9_F_contig11114:1398..1475Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11114 1399..1475 +
1692277842.3078895-CDS-Ecto-sp9_F_contig11114:1398..14751692277842.3078895-CDS-Ecto-sp9_F_contig11114:1398..1475Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11114 1399..1475 +
1622928351.5994895-CDS-Ecto-sp9_F_contig11114:3425..37171622928351.5994895-CDS-Ecto-sp9_F_contig11114:3425..3717Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11114 3426..3717 +
1692277842.318788-CDS-Ecto-sp9_F_contig11114:3425..37171692277842.318788-CDS-Ecto-sp9_F_contig11114:3425..3717Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11114 3426..3717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11114.966.1

>prot_Ecto-sp9_F_contig11114.966.1 ID=prot_Ecto-sp9_F_contig11114.966.1|Name=mRNA_Ecto-sp9_F_contig11114.966.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=123bp
MSECCIQLAQSRIFVECSSGTQHGLSDTSVPGVTNTATTTTTASTTTVAT
SCPGAAHADLPGTTTTTATTTAGIAVRPAKSILVRLRGSVPVAVVLAEPA
AHLANAGLQEEADQHRRYQRGQG
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mRNA from alignment at Ecto-sp9_F_contig11114:1396..3717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11114.966.1 ID=mRNA_Ecto-sp9_F_contig11114.966.1|Name=mRNA_Ecto-sp9_F_contig11114.966.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2322bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11114:1396..3717+ (Ectocarpus species9 EcSCA_722f female)
CCGATGAGTGAGTGCTGTATCCAGCTCGCGCAAAGCAGAATATTTGTAGA
GTGCAGCAGTGGGACACAGCATGGCCTAAGGTACGAATCTTGGTGTTGAG
CGTTTCAGCAATGTCCTGGGCTATGCATATTGCATATGCATGTCTGCCTG
TAGGCAGTTGTTAGCCTTGGGCTTTGGACCAAGATTCTTTGCCAAAATGA
TAAATAAATGAGAAATACATACATACTCGTATTGCAAAACTCACGGCCTG
TCTTGTGCCTGAACGCGTTCAAATGTGTGTTCTGCAGAGAATGACTGTAG
ACGACTTGAAGGCATCCAAGGCAATTCGTTGTGAATATCTCGAGTCGTTT
TCCTATGACAAGTTACCGCATCGCCATCGTCGCCCTCGTCGTGTATATTG
TTGTGTGACGTACACGTTGTGTGATGTAGAAGGTGATGTGGTAGTAAGTA
GTATGCGCCAACCCTTTGATTGAATATTGGAGTAGTCCGTTAATATGCAA
TATGCATATCTATCTATCTGCGAACACTGCTGTTCTCCTCTGTTTTGTTC
TTTGCTTTTCGCATGTTTCACCTCCTCCCGCGGCTCTCTTAACCCACTCC
GGAGTGGAAGGCCTTGTAGTACGGGCCGTACAAAAGTGAACAAACTGCAG
AGGCCTACACACTGTAGTTTTTGATTCTGTTAGTAGGGCTGCGTTGAACT
TGTTAGAACAATACAATTTACGTTTGTCTCCTCGGAATTCACACCGTGTA
GACATCCAACGCCACGCAGTTGCATTGAATATCCTCCCCTCCCCGACTTA
CACATGCCCAAGAAAGGTTTGTCAGTGGTCTTAGCTCTGCCAAGTCTCAT
ACCGCGTTTCGTGTCTCCCCGGCCCCCCGTCCTCGCCCCGGCACGTACGT
CGTAACGCTAAATTGTTTTCGACTTTCTGAGAGACACAACGGGTAGCTAC
GAAGAACCGTGACAAATCCTGCGTCTCCGGTGTGGATGTCTTGTGAGGCT
GGTTACGAAAAATTGCTTGGGGCTTCTCGTTGGTACAGTATGGTCAAAAC
GAGATATACGTGCGTGGTGCGCGCGCTCTACAAGAAACACCTGACTATAT
TTGTCTACCACCCTACAGTAGGAATTATCTCTTGACGCCTTGGCCGGGGC
CTTGACGGCAGAATATACAGAAACCTCGAAAAGAGTGACATCGCCGGGAC
CTGCATCTTGAGCCCCGGCGCTAAGATGAAGAAGGCACACGGCCCTACAA
CCGTTCTAGATTGTGTTGAGTGTCCATAGCTTCTTGCCTCGTTATCAACG
GCGTCGTCAATTGTATGTTCGTCCCGCAGCGAGCAAGAGACTAGACACTT
GAAGCTGCCTTCCGTCGTCAGGTCGTTCTCACACTGGAACGTAAGGTCTT
TCCACTCTTGAATGCCCTACTGGGTTTTAGATTTTGAAGCCTCCACCACA
AAGAAAGGCAATCACAGCCACACATAGCAATCCGATTTCCAACAGTATGT
ACGTTGGATGGAAAGCCTCCCACCAGAACCCACCAGAACCCCTCAGAATC
CCCCAAGAGGCCGTCGACACGAAACAGGTTGCTCGGCTTCTCTTGTGGTC
GAGGTTTGTCGGGAATAGACTCAAACGAACAGAGAGGCTCGTCTCGTCGT
CTGTCGCGCCAAAATGCCGGCGCCGTGGCCTCCAGCAGAAAACTGTCAGC
TTAATCTGGTCGCTCGGGCGCCGGGGGAGCCGTCGGGGGTTGGAGCCTTG
GAGGGGACAAAATCCCGTTGGCGTAGCCGTAGTTGCCCTCCGTAGTTGAG
ACGTGGGGGCGAGGGCTGCCGTAGTGTGGTAGCCGCCTACACCATTCGCG
CTCCCGCCGTCGCTGCCGCCGCCGTAACTAGTGTATTGGAGGCCGTTGTT
GTAGCCGTTGGCTGTGGCATTGTTGTGTTGCTGCCCCAGTTTCCGTTCAC
ACCGCCGACGCCGCCGACGCCGCCAACGCCGCCGTGGCGGTCCCTCCAAC
CGCCACCAATTCCGCCGCTTTCATGCGCAGCGACACCTCCGTACCCGGCG
TCACGAACACCGCCACCACCACCACCACCGCCTCCACCACCACCGTCGCC
ACTTCTTGCCCAGGAGCCGCCCACGCCGACTTGCCGGGCACCACCACCAC
CACCGCTACCACTACCGCCGGCATTGCCGTTCGCCCGGCCAAATCCATCC
TGGTCCGACTCCGCGGCAGTGTCCCAGTTGCCGTCGTACTCGCCGAACCC
GCAGCACATCTTGCGAATGCAGGCCTTCAGGAGGAGGCAGACCAACACCG
TCGCTATCAGCGCGGCCAAGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11114:1396..3717+

>mRNA_Ecto-sp9_F_contig11114.966.1 ID=mRNA_Ecto-sp9_F_contig11114.966.1|Name=mRNA_Ecto-sp9_F_contig11114.966.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11114:1396..3717+ (Ectocarpus species9 EcSCA_722f female)
ATGAGTGAGTGCTGTATCCAGCTCGCGCAAAGCAGAATATTTGTAGAGTG
CAGCAGTGGGACACAGCATGGCCTAAGATGAGTGAGTGCTGTATCCAGCT
CGCGCAAAGCAGAATATTTGTAGAGTGCAGCAGTGGGACACAGCATGGCC
TAAGCGACACCTCCGTACCCGGCGTCACGAACACCGCCACCACCACCACC
ACCGCCTCCACCACCACCGTCGCCACTTCTTGCCCAGGAGCCGCCCACGC
CGACTTGCCGGGCACCACCACCACCACCGCTACCACTACCGCCGGCATTG
CCGTTCGCCCGGCCAAATCCATCCTGGTCCGACTCCGCGGCAGTGTCCCA
GTTGCCGTCGTACTCGCCGAACCCGCAGCACATCTTGCGAATGCAGGCCT
TCAGGAGGAGGCAGACCAACACCGTCGCTATCAGCGCGGCCAAGGCCGAC
ACCTCCGTACCCGGCGTCACGAACACCGCCACCACCACCACCACCGCCTC
CACCACCACCGTCGCCACTTCTTGCCCAGGAGCCGCCCACGCCGACTTGC
CGGGCACCACCACCACCACCGCTACCACTACCGCCGGCATTGCCGTTCGC
CCGGCCAAATCCATCCTGGTCCGACTCCGCGGCAGTGTCCCAGTTGCCGT
CGTACTCGCCGAACCCGCAGCACATCTTGCGAATGCAGGCCTTCAGGAGG
AGGCAGACCAACACCGTCGCTATCAGCGCGGCCAAGGC
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