mRNA_Ecto-sp9_F_contig1111.962.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP1_9PHAE) HSP 1 Score: 858 bits (2216), Expect = 1.300e-288 Identity = 597/777 (76.83%), Postives = 611/777 (78.64%), Query Frame = 2
Query: 77 MAVAVIMPPSMPSSKKRCWNLLVKDVRNNAQEAEVLSSFRKRYTSTRKLAFRPVADYAGGSTSXXXXXXXXXXXXXXXXXXITQGGRACIEIQFTGPQPIEGPAGLMCNLLQATFVSAHPVQLDRGRKRKTRPGXXXXXXXXXXXXXXXXXXXXXXXXXRSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHEDLSAYVSDTTSYASSRXXXXXXXXXXXXXXXXXXXXXXXXXX-DATWADVGELPSTSSPFSPNQEQQHAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSAPVPATTADFPASSASPPPFLGRSCSVMTAEGNDLPRWDDVIRGVESPPSSGGSIDEA--SGDRGHAAXXXXXXSPPLGVRPASGDTDDLAPASASCPGLARGTSYDECRAGVMSQEEAVSLFAATGAATADAKPPASAXXX-AGEGQWDGAPDDDPDAPFCPLALERHCSSTWALLDPTHAGAAAAAVTVAGEEGAPDHQRASIVPDPCLAAESSEEQQQPTMWYGEGPHHSAVPAGGGLELPPAGDTIAFGWREQV------------------------------CDFDGNYATRPSKAARVLPPTAATSFFPDPSAVAXXXXXXXXXXXXPSSNSLNNRCRFAFLGLESELRDFTVCARFSVDPASRVERFASLPLDGAAGGGGGSDPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKI 2305
MAVA I PPSMPSSKKRCWNLLVKDVRN+AQE EVLSSFRKRYTSTRKLAFRPVADYAGGST XXXXXXXXXXXXXXX IT GGRACIEIQFTGPQPIEGPAGL+C+LL+ATFVSAHPVQLDRGRKRKTRPGXXXXXXXXXXXXXXX RSV XXXXXXXXXXXXXXXXXXXXXXXXXXXX KHEDLS YVSDTTSYASSR XXXXXXXXXXXXXXXXXXXXXXXXX DATWADVGELPSTSSPFSPNQEQQHA + XXXXXXXXXXX SLSAPVPATTADFPASS SPPP LGRSCSVMTAEGNDLPRWDDVIRGVESPPSSGGSIDEA SGDR AA PPLG RPASGDTDD APASASCPGLARGTSYDECRAGVMSQEEAVSLFAA GAATA+ XXX AG GQW+GAPDD+PDAPFCP+ALERHCSSTWALLDPT+AGAAAAAVTVAGEEGA DHQRASIVPDPCLAAES MWYGEGPHHSAVPAGGGLE+PP GD+IAFGW EQ CDFDGN A PSK R LPPTAATSFFPDPSA PSSN LNNRCR AFLGLESELRD TVCARFSVDPASRVERFASLPLDGAAG DPAG VGGRRGR DAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSS+GNILYTGPTLK+
Sbjct: 1 MAVAAIPPPSMPSSKKRCWNLLVKDVRNHAQEDEVLSSFRKRYTSTRKLAFRPVADYAGGSTXXXXXXXXXXXXXXXX---ITHGGRACIEIQFTGPQPIEGPAGLLCSLLEATFVSAHPVQLDRGRKRKTRPGXXXXXXXXXXXXXXXLAETSEEGCSRSVALKTTAADTASATAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXX------KHEDLSDYVSDTTSYASSRTXXXXXXXXXXXXXXXXXXXXXXXXXXDATWADVGELPSTSSPFSPNQEQQHADDMVVIDDDICTAFGVAFGGQGGLIXXXXXXXXXXX--SLSAPVPATTADFPASSTSPPPCLGRSCSVMTAEGNDLPRWDDVIRGVESPPSSGGSIDEADASGDRLPAAAAP----PPLGARPASGDTDDPAPASASCPGLARGTSYDECRAGVMSQEEAVSLFAAAGAATAEXXXXXXXXXXSAGHGQWEGAPDDNPDAPFCPVALERHCSSTWALLDPTNAGAAAAAVTVAGEEGATDHQRASIVPDPCLAAESXXXXXXAIMWYGEGPHHSAVPAGGGLEMPPPGDSIAFGWCEQTEAAVNEGTKFLSYHRVTHAHAPPCSLTIQECDFDGNCAATPSKPPRGLPPTAATSFFPDPSAAVAACTSR------PSSNYLNNRCRLAFLGLESELRDVTVCARFSVDPASRVERFASLPLDGAAGXXXXXDPAGVVGGRRGRADAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSEGNILYTGPTLKL 756
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK7_ECTSI) HSP 1 Score: 807 bits (2084), Expect = 6.210e-271 Identity = 578/782 (73.91%), Postives = 586/782 (74.94%), Query Frame = 2
Query: 77 MAVAVIMPPSMPSSKKRCWNLLVKDVRNNAQEAEVLSSFRKRYTSTRKLAFRPVADYAGGSTSXXXXXXXXXXXXXXXXXX---------ITQGGRACIEIQFTGPQPIEGPAGLMCNLLQATFVSAHPVQLDRGRKRKTRPGXXXXXXXXXXXXXXXXXXXXXXXXXRSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHEDLSAYVSDTTSYASSRXXXXXXXXXXXXXXXXXXXXXXXXXXDATWADVGELPSTSSPFSPNQEQQHAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSAPVPATTADFPASSASPPPFLGRSCSVMTAEGNDLPRWDDVIRGVESPPSSGGSIDEASGDRGHAAXXXXXXSPPLGVRPASGDTDDLAPASASCPGLARGTSYDECRAGVMSQEEAVSLFAATGAATADAKPPAS-AXXXAGEGQWDGAPDDDPDAPFCPLALERHCSSTWALLDPTHAGAAAAAVTVAGEEGAPDHQRASIVPDPCLAAESS-EEQQQPTMWYGEGPHHSAVPAGGGLELPPAGDTIAFGWREQVCDFDGNYATRPSKAARVLPPTAATSFFPDPSAVAXXXXXXXXXXXXPS----SNSLNNRCRFAFLGLESELRDFTVCARFSVDPASRVERFASLPLDGAAGGGGGS--DPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRRSAARTSAPTDAAAAAALM 2371
MAVA IMPPSMPSSKKRCWNLLVKDVRNNAQEAEVLSSFRKRYTSTRKLAFRPVADYAGGSTSXXXXXXXXXXXXXXXXXX ITQGGRACIEIQFTGPQPIEGPAGLMCNLLQATFVSAHPVQLDRGRKRKTRPGXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SLSAPVPATTADFPASSASPPP LGRSCSVMTAEGNDLP D+ +ASGDR AAXXXXXX G RPASGDTDD AP+SASCPGLARGTSYDECRAG MSQEEAVSLFAATGAATA+AKPPAS A AG+ QW+ AP DDPD PFCPLALERHCSSTWALLDPTHAGA AAAVTVAGEEGAPDH+RASIVPDPCLAAESS EEQQQPTMWYGEGPHH AVPAGGGLELPPAGDTIAFGW EQ CDFDGNYA RPSK ARVLPPTAATSFFPDPSAVA XXXXXXXXXX SNSLNNRCRFAFLGLESE+RDFTVCARFSVDPASRVERFASLPLDGAAG DPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRRSAARTSAPTDAAAAAALM
Sbjct: 1 MAVAAIMPPSMPSSKKRCWNLLVKDVRNNAQEAEVLSSFRKRYTSTRKLAFRPVADYAGGSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXITQGGRACIEIQFTGPQPIEGPAGLMCNLLQATFVSAHPVQLDRGRKRKTRPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------SLSAPVPATTADFPASSASPPPCLGRSCSVMTAEGNDLPSIDEA---------------DASGDRLPAAXXXXXXXX-FGARPASGDTDDPAPSSASCPGLARGTSYDECRAGFMSQEEAVSLFAATGAATAEAKPPASTAAAAAGDDQWERAPGDDPDGPFCPLALERHCSSTWALLDPTHAGAPAAAVTVAGEEGAPDHRRASIVPDPCLAAESSLEEQQQPTMWYGEGPHHPAVPAGGGLELPPAGDTIAFGWCEQECDFDGNYAARPSKTARVLPPTAATSFFPDPSAVAVAXXXXXXXXXXXXXXXXSNSLNNRCRFAFLGLESEIRDFTVCARFSVDPASRVERFASLPLDGAAGXXXXXXXDPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRRSAARTSAPTDAAAAAALM 641
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ5_ECTSI) HSP 1 Score: 100 bits (249), Expect = 6.550e-18 Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 2
Query: 95 MPPSMPSSKKRCWNLLVKDVRNNAQE-AEVLSSFRKRYTSTRKLAFRPV------------ADYAGGSTSXXXXXXXXXXXXXXXXXXITQGGRACIEIQFTGPQPIEGPAGLMCNLLQATFVSAHPVQLDRGRKRK 466
M PS+P +K+RCW+L++ NA E +VL+SFRKRYTS RK+ F+P A T+ T+ R CI+++F+GPQPI+GPA LMC+LL + VSA PV L RGR+RK
Sbjct: 50 MTPSLPLAKRRCWDLIITGACTNADEDVKVLASFRKRYTSARKVEFKPTPATTNAVAVNTTATTTLNHTTDTGVAETANRGHDDRFTTNTKRRRVCIQVEFSGPQPIKGPAELMCSLLSGSSVSALPVFLTRGRRRK 186
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L1_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 2.930e-17 Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = 2
Query: 95 MPPSMPSSKKRCWNLLVKDVRNNAQE-AEVLSSFRKRYTSTRKLAFRPV------------ADYAGGSTSXXXXXXXXXXXXXXXXXXITQGGRACIEIQFTGPQPIEGPAGLMCNLLQATFVSAHPVQLDRGRKRK 466
M PS+P +K+RCW+L++ +NA++ + L+SFRKRYTS RK+ F+P A +T+ T+ + CI+++F+GPQPI+GPA LMC+LL + VSA PV L RGR+RK
Sbjct: 7 MTPSLPLAKRRCWDLIITGASSNAEDDIKALASFRKRYTSARKIEFKPTPTATNAVAVNTAATTTFNNTTDTGVAETTNRGDDDGFTTNTKRRKVCIQVEFSGPQPIKGPAELMCSLLSGSSVSALPVFLARGRRRK 143
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ47_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 3.990e-15 Identity = 45/118 (38.14%), Postives = 61/118 (51.69%), Query Frame = 2
Query: 119 KKRCWNLLVKDVRNNAQEAEVLSSFRKRYTSTRKLAFRPVADYAGGSTSXXXXXXXXXXXXXXXXXXITQGGRACIEIQFTGPQPIEGPAGLMCNLLQATFVSAHPVQLDRGRKRKTR 472
K+RCW V V +NA E E+L+S R+RYT+ ++L RP A + +E+QFTGPQP EGP L+C+LL V A PV+L RGRK++ R
Sbjct: 41 KQRCWLFQVDGVTSNASEVELLASIRERYTTVKRLVVRPAATSKDAVAAADGSPR-----------------NVVVEVQFTGPQPSEGPGALLCDLLCGVSVDAKPVELPRGRKKRAR 141
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 7.560e-14 Identity = 61/157 (38.85%), Postives = 79/157 (50.32%), Query Frame = 2
Query: 1952 PSSNSLNNRCRFAFLGLES---ELRDFTVCARFSVDPASRVERFAS-LPLDGAAGGGGGSDPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRRSAARTSAPTDAAAAAALMA*RETLAEKVVVP 2410
P +S + +C F GL + +LR V A F VD +V + S + L G GR A V +PS+ EIWPE+Y NIRV+EVD+VVE+RS G Y GP LK+TY R+A P DAA A A R T A + +P
Sbjct: 402 PIPSSTDRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQL-----------------GSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLRAAP----PADAAEATPRPAGRRT-ASRAPIP 536
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 4.020e-8 Identity = 47/112 (41.96%), Postives = 59/112 (52.68%), Query Frame = 2
Query: 1991 FLGLESELRDF-TVCAR--FSVDPASRVERFASLPLDGAAGGGGGSDPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRR 2317
F+GL R T+ AR FS +P + ER PL G GRV AV++PS+ E+WPEVY IRV++VDM+VEVRS G+ LY LK YRR
Sbjct: 243 FIGLGETGRPLPTLAARAQFSANPGRKAERMVG-PLQA---------------GSNGRVYGAVQYPSMAELWPEVYNSTAIRVVKVDMLVEVRSRYGDSLYLATELKAMYRR 338
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 8.630e-8 Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 2
Query: 2033 ARFSVDPASRVERFASLPLDGAAGGGGGSDPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRR 2317
A+FS +P + ER PL A G GRV AV++PS+ E+WPEVY IRV++VDM+VEVRS G+ LY L YRR
Sbjct: 342 AQFSANPGRQAERMVG-PLQARA-------------GSNGRVYGAVQYPSMAELWPEVYNSKAIRVVKVDMLVEVRSRSGDSLYLATELMAMYRR 422
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J1_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 2.920e-6 Identity = 50/172 (29.07%), Postives = 71/172 (41.28%), Query Frame = 2
Query: 1808 QVCDFDGNYATRPSKAARVLPPTAATSFFPDPSAVAXXXXXXXXXXXXPSSNSLNNRCRFAFL-GLESELRDFTVCARFSVDPASRVERFASLPLDGAAGGGGGSDPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRRS 2320
QVCDF G P ++ V+P A F S SL F L G L T FS++ + R A P+ G RV AV++P++ E+WPE+Y+ + V++VD+ + VRS I Y G LK+TYRR+
Sbjct: 4 QVCDFHGRAVAHPQES--VVPSALAACFM---------------------SGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAG-PMQV---------------GEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRRT 136
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W7_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 3.480e-6 Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 2
Query: 2141 GRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRR 2317
G GRV V+ PS+ ++WPEVY +RV++VD+ VE+RS G+ L+ LK+ YRR
Sbjct: 88 GPNGRVYGGVQCPSMKDLWPEVYSAAAVRVVQVDLRVEIRSRSGDFLHLDSELKVIYRR 146 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1111.962.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1111.962.1 >prot_Ecto-sp9_F_contig1111.962.1 ID=prot_Ecto-sp9_F_contig1111.962.1|Name=mRNA_Ecto-sp9_F_contig1111.962.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=767bp MAVAVIMPPSMPSSKKRCWNLLVKDVRNNAQEAEVLSSFRKRYTSTRKLAback to top mRNA from alignment at Ecto-sp9_F_contig1111:8835..16342- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1111.962.1 ID=mRNA_Ecto-sp9_F_contig1111.962.1|Name=mRNA_Ecto-sp9_F_contig1111.962.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=7508bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1111:8835..16342- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1111:8835..16342- >mRNA_Ecto-sp9_F_contig1111.962.1 ID=mRNA_Ecto-sp9_F_contig1111.962.1|Name=mRNA_Ecto-sp9_F_contig1111.962.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4602bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1111:8835..16342- (Ectocarpus species9 EcSCA_722f female)back to top |