mRNA_Ecto-sp9_F_contig11086.941.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ8_ECTSI) HSP 1 Score: 489 bits (1259), Expect = 7.960e-168 Identity = 251/256 (98.05%), Postives = 255/256 (99.61%), Query Frame = 2
Query: 257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYETISKDDDGGVEGPYG 1024
+AVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEE+QFKRLLAKDEHERLERLALKK+ALEEQDEYET+SKDDDG VEGPYG
Sbjct: 65 KAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEQQFKRLLAKDEHERLERLALKKKALEEQDEYETVSKDDDGDVEGPYG 320
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXI1_9STRA) HSP 1 Score: 315 bits (806), Expect = 3.800e-100 Identity = 162/243 (66.67%), Postives = 191/243 (78.60%), Query Frame = 2
Query: 257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYETI 985
+AV RG + L+V DMPFGSYEVS + A+ A RF+KEG DAVK+EGG++RA + K+V GIAVMGHVGLTPQAISVLGGFRAQGRTAVKAR +VDDALA+QEAGAFAVVVECVP+PVA+A+TEALEIPTIGIGAGP T GQVLVYHDMLGM HPHH FVPRFCK YA +G +R GLE+F+++VE G FP E +SPYKMPA E F+ L+A+D R + L++ DEYE I
Sbjct: 50 KAVARGTKRSLIVGDMPFGSYEVSEELAMTNAFRFIKEGFTDAVKIEGGRDRAHIVEKIVKNGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARGLVDDALALQEAGAFAVVVECVPAPVAQAITEALEIPTIGIGAGPHTCGQVLVYHDMLGMTTHPHHEAFVPRFCKRYAQLGNVIREGLESFKQDVEAGTFPSEAYSPYKMPAAELRAFQALMAQDATSRQTQAHRAAERLKQSDEYEQI 292
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQW2_9STRA) HSP 1 Score: 313 bits (802), Expect = 1.950e-98 Identity = 161/243 (66.26%), Postives = 191/243 (78.60%), Query Frame = 2
Query: 257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYETI 985
+AV RG + L+V DMPFGSYEVS + A+ A RF+KEG DAVK+EGG++RA + K+V GIAVMGHVGLTPQAISVLGGFRAQGRTAVKAR +VDDALA+QEAGAFAVVVECVP+PVA+A+TEALEIPTIGIGAGP T GQVLV+HDMLGM HPHH FVPRFCK YA +G +R GLE+F+++VE G FP E +SPYKMPA E F+ L+A+D R + L++ DEYE I
Sbjct: 128 KAVARGTKRSLIVGDMPFGSYEVSEELAMTNAFRFIKEGFTDAVKIEGGRDRAHIVEKIVKNGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARGLVDDALALQEAGAFAVVVECVPAPVAQAITEALEIPTIGIGAGPHTCGQVLVFHDMLGMTTHPHHEAFVPRFCKRYAQLGNVIREGLESFKQDVEAGTFPSEAYSPYKMPAAELRAFQALMAQDATSRQTQAHRAAERLKQSDEYEQI 370
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FBI3_9STRA) HSP 1 Score: 303 bits (776), Expect = 1.940e-95 Identity = 152/241 (63.07%), Postives = 192/241 (79.67%), Query Frame = 2
Query: 257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYE 979
+AV RG L+V D+PFGSYE+SP +AL++A R VKEG DAVKLEGG++RA+ R +V GGIAVMGH+GLTPQAISV+GGFRAQGRT VKAR ++DDALA+Q+AG FA+V+ECVP VA+ +TE+LEIPTIGIGAGP T+GQVLVYHDMLGML HPHH QFVP+FCK YA VG +R GL+ F+ +V+ G+FP +E +PYKM EE +F+ L+A+DE R +L + L++ DEYE
Sbjct: 63 KAVKRGVERSLIVVDLPFGSYEISPAQALQSAYRCVKEGGADAVKLEGGRDRADTCRSIVKGGIAVMGHIGLTPQAISVIGGFRAQGRTGVKARALLDDALALQDAGVFALVLECVPPQVAQVITESLEIPTIGIGAGPHTTGQVLVYHDMLGMLSHPHHEQFVPKFCKKYAEVGHAIRFGLDAFKSDVDQGLFPADEFTPYKMSDKEEIKFRELVAEDEGVRQSKLTRASKRLKDADEYE 303
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1C3_9STRA) HSP 1 Score: 298 bits (764), Expect = 1.520e-94 Identity = 150/237 (63.29%), Postives = 187/237 (78.90%), Query Frame = 2
Query: 272 GARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYET 982
G ++V D+PFGSYEVS ++AL +A FVKE DAVKLEGGK+RA +RK+V GG+AVMGH+GLTPQAISV GGFRAQGRT VKAR+++DDALA+Q+AGAFA+V+EC+P+PV K ++E+LEIPTIGIGAGP TSGQVLV+HDMLGM HPHH QFVP FC+ YA+VG+ +RRGL++F+ VE G FP EE+SPYKM A EE F +L++ D R L L++ DEYET
Sbjct: 1 GITRSVMVVDLPFGSYEVSDQQALESAHVFVKECGADAVKLEGGKDRASSVRKIVQGGVAVMGHIGLTPQAISVTGGFRAQGRTGVKARKLLDDALALQDAGAFAIVLECIPAPVGKVISESLEIPTIGIGAGPHTSGQVLVFHDMLGMTTHPHHEQFVPSFCRKYATVGDTIRRGLDDFKAHVEAGEFPSEEYSPYKMSAEEEAVFMQLVSADASRRKHELEETSMRLKQSDEYET 237
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W4X2_GLOUD) HSP 1 Score: 300 bits (767), Expect = 2.470e-93 Identity = 151/216 (69.91%), Postives = 177/216 (81.94%), Query Frame = 2
Query: 257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLL 904
QAV RGA PL++ADMPFGS E P EAL+ A R +KEG D VK+EGG+ RA+ I+ +VDGGIAVMGHVGL PQ ISVLGGFRAQGRTAV+A Q+++DALAVQEAGAFAVV+ECVPSPVAK VTE L +PTIGIGAGP TSGQVLV+HD+LGMLQHPHHAQ VP+FCK YA VGE +R GLE +R +VE FP EE++PYKM A E E+ + L+
Sbjct: 124 QAVKRGAERPLIIADMPFGSCEGDPYEALKNAQRLLKEGGADCVKIEGGRERAKTIKLIVDGGIAVMGHVGLRPQHISVLGGFRAQGRTAVQAEQIIEDALAVQEAGAFAVVLECVPSPVAKQVTELLRVPTIGIGAGPDTSGQVLVFHDLLGMLQHPHHAQHVPKFCKRYADVGERIRIGLEEYREDVENRRFPSEEYAPYKMSAEETEKLQELV 339
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z145_9STRA) HSP 1 Score: 297 bits (760), Expect = 5.280e-93 Identity = 156/250 (62.40%), Postives = 184/250 (73.60%), Query Frame = 2
Query: 257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYETISKDDDGG 1006
+AV RGA PL+V DMPFGSYEVSP++AL+TA RFVKEG VDAVKLEGG+ R EHI+++V+GG+AVMGHVGLTPQAISVLGGFRAQGR+ + QEAGAFAVV+ECVP+ V +A+ +ALEIP IGIGAGP T GQVLVYHDMLG+L HPHH + P+FCK +A V EV +GL +RREVE G FP HSPY M EE F+ LLA D ER E L K+ L+EQDE E + GG
Sbjct: 65 RAVKRGAAGPLLVGDMPFGSYEVSPEQALQTAYRFVKEGGVDAVKLEGGRTRTEHIKRIVEGGVAVMGHVGLTPQAISVLGGFRAQGRSVI------------QEAGAFAVVLECVPAVVGRAIADALEIPVIGIGAGPHTDGQVLVYHDMLGILSHPHHQRMAPKFCKVFADVQTEVMKGLHAYRREVEAGAFPGAAHSPYAMTPAEEANFEHLLAHDARERREAAELTKKKLKEQDELEAVRLYGQGG 302
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YGP1_9STRA) HSP 1 Score: 294 bits (752), Expect = 3.750e-91 Identity = 149/218 (68.35%), Postives = 174/218 (79.82%), Query Frame = 2
Query: 257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAK 910
+A RGA PL+VADMPFG+ E P EAL+ A R +KEG D VK+EGG+ R + IR +V+GGIAVMGHVGL PQ ISVLGGFRAQGRTA +A +++ DALAVQEAGAFAVV+ECVPSPVAK VTE LEIPTIGIGAGP TSGQVLVYHD+LGMLQHPHHAQFVP+FCK YA VGE +R GLE +R +VE FP E+++PYKM E E+ L+ K
Sbjct: 121 KAARRGASRPLIVADMPFGTCEGDPYEALKNAQRMLKEGGADCVKIEGGRGRTKTIRTIVEGGIAVMGHVGLLPQHISVLGGFRAQGRTAAQAEEIIKDALAVQEAGAFAVVLECVPSPVAKQVTELLEIPTIGIGAGPETSGQVLVYHDLLGMLQHPHHAQFVPKFCKRYADVGERIRIGLEEYREDVENRRFPNEDYAPYKMSKEESEKLAELVEK 338
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z720_9STRA) HSP 1 Score: 291 bits (744), Expect = 2.470e-90 Identity = 147/216 (68.06%), Postives = 178/216 (82.41%), Query Frame = 2
Query: 257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLL 904
+AV RGA+ PL+VADMPFG+ E +AL+ A R +KEG VD VK+EGG RAE I+ +V+GGIAVMGHVGL PQAISVLGGFRAQGRTA +A Q+++DALAVQ AGAFAVV+ECVPS VAKAVT+ L+IPTIGIG+GP TSGQVLV+HD+LGML HPHHAQFVP+FCK YA VGE +R GLEN+R +VE FP EE++PYKM + E+ + K L+
Sbjct: 95 KAVARGAKRPLLVADMPFGTCEGHRFDALKNAQRLMKEGGVDCVKVEGGAERAETIKTLVEGGIAVMGHVGLRPQAISVLGGFRAQGRTAKQAEQIIEDALAVQNAGAFAVVIECVPSVVAKAVTDILDIPTIGIGSGPNTSGQVLVFHDLLGMLTHPHHAQFVPKFCKKYADVGESIRVGLENYREDVENNRFPNEEYAPYKMSSDEQVKLKALV 310
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H7K8_9EUKA) HSP 1 Score: 291 bits (744), Expect = 3.740e-90 Identity = 146/226 (64.60%), Postives = 180/226 (79.65%), Query Frame = 2
Query: 242 LCDFRQAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQ-EEHSPYKMPAGEEEQFKRLLAKDE 916
L +AV RGA+ PL++AD+PFGSYEV PK+A +A +FVKE VDAVK+EGG+ A ++KVVDGGIAVMGHVGLTPQ I+VLGGFRAQGRTA KAR ++DDALA++ AGAFA+V+ECVP+ V +A+T ALEIPTIGIGAGP TSGQVLVYHDMLGM HPH+ F P+FCK + +GE +R GLE F++EVE G FP +HSPYKM E+E F+ +L+ DE
Sbjct: 120 LLHHAKAVVRGAKHPLIIADLPFGSYEVDPKQAQESAYKFVKEAGVDAVKMEGGRRLAPTVKKVVDGGIAVMGHVGLTPQHINVLGGFRAQGRTAKKARDLLDDALALEAAGAFAIVIECVPAQVGEAITNALEIPTIGIGAGPGTSGQVLVYHDMLGMTVHPHYKAFTPKFCKKFVDLGETIREGLECFKKEVETGEFPSFSDHSPYKMSKKEQELFREMLSVDE 345 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11086.941.1 >prot_Ecto-sp9_F_contig11086.941.1 ID=prot_Ecto-sp9_F_contig11086.941.1|Name=mRNA_Ecto-sp9_F_contig11086.941.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=254bp MPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAback to top mRNA from alignment at Ecto-sp9_F_contig11086:61..3939- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11086.941.1 ID=mRNA_Ecto-sp9_F_contig11086.941.1|Name=mRNA_Ecto-sp9_F_contig11086.941.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3879bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11086:61..3939- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11086:61..3939- >mRNA_Ecto-sp9_F_contig11086.941.1 ID=mRNA_Ecto-sp9_F_contig11086.941.1|Name=mRNA_Ecto-sp9_F_contig11086.941.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11086:61..3939- (Ectocarpus species9 EcSCA_722f female)back to top |