mRNA_Ecto-sp9_F_contig11086.941.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11086.941.1
Unique NamemRNA_Ecto-sp9_F_contig11086.941.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ8_ECTSI)

HSP 1 Score: 489 bits (1259), Expect = 7.960e-168
Identity = 251/256 (98.05%), Postives = 255/256 (99.61%), Query Frame = 2
Query:  257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYETISKDDDGGVEGPYG 1024
            +AVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEE+QFKRLLAKDEHERLERLALKK+ALEEQDEYET+SKDDDG VEGPYG
Sbjct:   65 KAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEQQFKRLLAKDEHERLERLALKKKALEEQDEYETVSKDDDGDVEGPYG 320          
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXI1_9STRA)

HSP 1 Score: 315 bits (806), Expect = 3.800e-100
Identity = 162/243 (66.67%), Postives = 191/243 (78.60%), Query Frame = 2
Query:  257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYETI 985
            +AV RG +  L+V DMPFGSYEVS + A+  A RF+KEG  DAVK+EGG++RA  + K+V  GIAVMGHVGLTPQAISVLGGFRAQGRTAVKAR +VDDALA+QEAGAFAVVVECVP+PVA+A+TEALEIPTIGIGAGP T GQVLVYHDMLGM  HPHH  FVPRFCK YA +G  +R GLE+F+++VE G FP E +SPYKMPA E   F+ L+A+D   R  +       L++ DEYE I
Sbjct:   50 KAVARGTKRSLIVGDMPFGSYEVSEELAMTNAFRFIKEGFTDAVKIEGGRDRAHIVEKIVKNGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARGLVDDALALQEAGAFAVVVECVPAPVAQAITEALEIPTIGIGAGPHTCGQVLVYHDMLGMTTHPHHEAFVPRFCKRYAQLGNVIREGLESFKQDVEAGTFPSEAYSPYKMPAAELRAFQALMAQDATSRQTQAHRAAERLKQSDEYEQI 292          
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQW2_9STRA)

HSP 1 Score: 313 bits (802), Expect = 1.950e-98
Identity = 161/243 (66.26%), Postives = 191/243 (78.60%), Query Frame = 2
Query:  257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYETI 985
            +AV RG +  L+V DMPFGSYEVS + A+  A RF+KEG  DAVK+EGG++RA  + K+V  GIAVMGHVGLTPQAISVLGGFRAQGRTAVKAR +VDDALA+QEAGAFAVVVECVP+PVA+A+TEALEIPTIGIGAGP T GQVLV+HDMLGM  HPHH  FVPRFCK YA +G  +R GLE+F+++VE G FP E +SPYKMPA E   F+ L+A+D   R  +       L++ DEYE I
Sbjct:  128 KAVARGTKRSLIVGDMPFGSYEVSEELAMTNAFRFIKEGFTDAVKIEGGRDRAHIVEKIVKNGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARGLVDDALALQEAGAFAVVVECVPAPVAQAITEALEIPTIGIGAGPHTCGQVLVFHDMLGMTTHPHHEAFVPRFCKRYAQLGNVIREGLESFKQDVEAGTFPSEAYSPYKMPAAELRAFQALMAQDATSRQTQAHRAAERLKQSDEYEQI 370          
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FBI3_9STRA)

HSP 1 Score: 303 bits (776), Expect = 1.940e-95
Identity = 152/241 (63.07%), Postives = 192/241 (79.67%), Query Frame = 2
Query:  257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYE 979
            +AV RG    L+V D+PFGSYE+SP +AL++A R VKEG  DAVKLEGG++RA+  R +V GGIAVMGH+GLTPQAISV+GGFRAQGRT VKAR ++DDALA+Q+AG FA+V+ECVP  VA+ +TE+LEIPTIGIGAGP T+GQVLVYHDMLGML HPHH QFVP+FCK YA VG  +R GL+ F+ +V+ G+FP +E +PYKM   EE +F+ L+A+DE  R  +L    + L++ DEYE
Sbjct:   63 KAVKRGVERSLIVVDLPFGSYEISPAQALQSAYRCVKEGGADAVKLEGGRDRADTCRSIVKGGIAVMGHIGLTPQAISVIGGFRAQGRTGVKARALLDDALALQDAGVFALVLECVPPQVAQVITESLEIPTIGIGAGPHTTGQVLVYHDMLGMLSHPHHEQFVPKFCKKYAEVGHAIRFGLDAFKSDVDQGLFPADEFTPYKMSDKEEIKFRELVAEDEGVRQSKLTRASKRLKDADEYE 303          
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1C3_9STRA)

HSP 1 Score: 298 bits (764), Expect = 1.520e-94
Identity = 150/237 (63.29%), Postives = 187/237 (78.90%), Query Frame = 2
Query:  272 GARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYET 982
            G    ++V D+PFGSYEVS ++AL +A  FVKE   DAVKLEGGK+RA  +RK+V GG+AVMGH+GLTPQAISV GGFRAQGRT VKAR+++DDALA+Q+AGAFA+V+EC+P+PV K ++E+LEIPTIGIGAGP TSGQVLV+HDMLGM  HPHH QFVP FC+ YA+VG+ +RRGL++F+  VE G FP EE+SPYKM A EE  F +L++ D   R   L      L++ DEYET
Sbjct:    1 GITRSVMVVDLPFGSYEVSDQQALESAHVFVKECGADAVKLEGGKDRASSVRKIVQGGVAVMGHIGLTPQAISVTGGFRAQGRTGVKARKLLDDALALQDAGAFAIVLECIPAPVGKVISESLEIPTIGIGAGPHTSGQVLVFHDMLGMTTHPHHEQFVPSFCRKYATVGDTIRRGLDDFKAHVEAGEFPSEEYSPYKMSAEEEAVFMQLVSADASRRKHELEETSMRLKQSDEYET 237          
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W4X2_GLOUD)

HSP 1 Score: 300 bits (767), Expect = 2.470e-93
Identity = 151/216 (69.91%), Postives = 177/216 (81.94%), Query Frame = 2
Query:  257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLL 904
            QAV RGA  PL++ADMPFGS E  P EAL+ A R +KEG  D VK+EGG+ RA+ I+ +VDGGIAVMGHVGL PQ ISVLGGFRAQGRTAV+A Q+++DALAVQEAGAFAVV+ECVPSPVAK VTE L +PTIGIGAGP TSGQVLV+HD+LGMLQHPHHAQ VP+FCK YA VGE +R GLE +R +VE   FP EE++PYKM A E E+ + L+
Sbjct:  124 QAVKRGAERPLIIADMPFGSCEGDPYEALKNAQRLLKEGGADCVKIEGGRERAKTIKLIVDGGIAVMGHVGLRPQHISVLGGFRAQGRTAVQAEQIIEDALAVQEAGAFAVVLECVPSPVAKQVTELLRVPTIGIGAGPDTSGQVLVFHDLLGMLQHPHHAQHVPKFCKRYADVGERIRIGLEEYREDVENRRFPSEEYAPYKMSAEETEKLQELV 339          
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z145_9STRA)

HSP 1 Score: 297 bits (760), Expect = 5.280e-93
Identity = 156/250 (62.40%), Postives = 184/250 (73.60%), Query Frame = 2
Query:  257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAKDEHERLERLALKKRALEEQDEYETISKDDDGG 1006
            +AV RGA  PL+V DMPFGSYEVSP++AL+TA RFVKEG VDAVKLEGG+ R EHI+++V+GG+AVMGHVGLTPQAISVLGGFRAQGR+ +            QEAGAFAVV+ECVP+ V +A+ +ALEIP IGIGAGP T GQVLVYHDMLG+L HPHH +  P+FCK +A V  EV +GL  +RREVE G FP   HSPY M   EE  F+ LLA D  ER E   L K+ L+EQDE E +     GG
Sbjct:   65 RAVKRGAAGPLLVGDMPFGSYEVSPEQALQTAYRFVKEGGVDAVKLEGGRTRTEHIKRIVEGGVAVMGHVGLTPQAISVLGGFRAQGRSVI------------QEAGAFAVVLECVPAVVGRAIADALEIPVIGIGAGPHTDGQVLVYHDMLGILSHPHHQRMAPKFCKVFADVQTEVMKGLHAYRREVEAGAFPGAAHSPYAMTPAEEANFEHLLAHDARERREAAELTKKKLKEQDELEAVRLYGQGG 302          
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YGP1_9STRA)

HSP 1 Score: 294 bits (752), Expect = 3.750e-91
Identity = 149/218 (68.35%), Postives = 174/218 (79.82%), Query Frame = 2
Query:  257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLLAK 910
            +A  RGA  PL+VADMPFG+ E  P EAL+ A R +KEG  D VK+EGG+ R + IR +V+GGIAVMGHVGL PQ ISVLGGFRAQGRTA +A +++ DALAVQEAGAFAVV+ECVPSPVAK VTE LEIPTIGIGAGP TSGQVLVYHD+LGMLQHPHHAQFVP+FCK YA VGE +R GLE +R +VE   FP E+++PYKM   E E+   L+ K
Sbjct:  121 KAARRGASRPLIVADMPFGTCEGDPYEALKNAQRMLKEGGADCVKIEGGRGRTKTIRTIVEGGIAVMGHVGLLPQHISVLGGFRAQGRTAAQAEEIIKDALAVQEAGAFAVVLECVPSPVAKQVTELLEIPTIGIGAGPETSGQVLVYHDLLGMLQHPHHAQFVPKFCKRYADVGERIRIGLEEYREDVENRRFPNEDYAPYKMSKEESEKLAELVEK 338          
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z720_9STRA)

HSP 1 Score: 291 bits (744), Expect = 2.470e-90
Identity = 147/216 (68.06%), Postives = 178/216 (82.41%), Query Frame = 2
Query:  257 QAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRLL 904
            +AV RGA+ PL+VADMPFG+ E    +AL+ A R +KEG VD VK+EGG  RAE I+ +V+GGIAVMGHVGL PQAISVLGGFRAQGRTA +A Q+++DALAVQ AGAFAVV+ECVPS VAKAVT+ L+IPTIGIG+GP TSGQVLV+HD+LGML HPHHAQFVP+FCK YA VGE +R GLEN+R +VE   FP EE++PYKM + E+ + K L+
Sbjct:   95 KAVARGAKRPLLVADMPFGTCEGHRFDALKNAQRLMKEGGVDCVKVEGGAERAETIKTLVEGGIAVMGHVGLRPQAISVLGGFRAQGRTAKQAEQIIEDALAVQNAGAFAVVIECVPSVVAKAVTDILDIPTIGIGSGPNTSGQVLVFHDLLGMLTHPHHAQFVPKFCKKYADVGESIRVGLENYREDVENNRFPNEEYAPYKMSSDEQVKLKALV 310          
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Match: 3-methyl-2-oxobutanoate (hydroxymethyltransferase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H7K8_9EUKA)

HSP 1 Score: 291 bits (744), Expect = 3.740e-90
Identity = 146/226 (64.60%), Postives = 180/226 (79.65%), Query Frame = 2
Query:  242 LCDFRQAVGRGARTPLVVADMPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVECVPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVPRFCKNYASVGEEVRRGLENFRREVEGGVFPQ-EEHSPYKMPAGEEEQFKRLLAKDE 916
            L    +AV RGA+ PL++AD+PFGSYEV PK+A  +A +FVKE  VDAVK+EGG+  A  ++KVVDGGIAVMGHVGLTPQ I+VLGGFRAQGRTA KAR ++DDALA++ AGAFA+V+ECVP+ V +A+T ALEIPTIGIGAGP TSGQVLVYHDMLGM  HPH+  F P+FCK +  +GE +R GLE F++EVE G FP   +HSPYKM   E+E F+ +L+ DE
Sbjct:  120 LLHHAKAVVRGAKHPLIIADLPFGSYEVDPKQAQESAYKFVKEAGVDAVKMEGGRRLAPTVKKVVDGGIAVMGHVGLTPQHINVLGGFRAQGRTAKKARDLLDDALALEAAGAFAIVIECVPAQVGEAITNALEIPTIGIGAGPGTSGQVLVYHDMLGMTVHPHYKAFTPKFCKKFVDLGETIREGLECFKKEVETGEFPSFSDHSPYKMSKKEQELFREMLSVDE 345          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11086.941.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
3-methyl-2-oxobutanoate7.960e-16898.05hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=... [more]
3-methyl-2-oxobutanoate3.800e-10066.67hydroxymethyltransferase n=1 Tax=Nannochloropsis s... [more]
3-methyl-2-oxobutanoate1.950e-9866.26hydroxymethyltransferase n=1 Tax=Nannochloropsis g... [more]
3-methyl-2-oxobutanoate1.940e-9563.07hydroxymethyltransferase n=2 Tax=Dictyocha speculu... [more]
3-methyl-2-oxobutanoate1.520e-9463.29hydroxymethyltransferase n=1 Tax=Rhizochromulina m... [more]
3-methyl-2-oxobutanoate2.470e-9369.91hydroxymethyltransferase n=1 Tax=Globisporangium u... [more]
3-methyl-2-oxobutanoate5.280e-9362.40hydroxymethyltransferase n=1 Tax=Tribonema minus T... [more]
3-methyl-2-oxobutanoate3.750e-9168.35hydroxymethyltransferase n=1 Tax=Pythium brassicum... [more]
3-methyl-2-oxobutanoate2.470e-9068.06hydroxymethyltransferase n=1 Tax=Thraustotheca cla... [more]
3-methyl-2-oxobutanoate3.740e-9064.60hydroxymethyltransferase (Fragment) n=1 Tax=Amorph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11086contigEcto-sp9_F_contig11086:61..3939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score461.8
Seed ortholog evalue2e-127
Seed eggNOG ortholog2880.D8LCZ8
Preferred namePANB
KEGG rclassRC00022,RC00200
KEGG koko:K00606
KEGG ReactionR01226
KEGG Pathwayko00770,ko01100,ko01110,map00770,map01100,map01110
KEGG ModuleM00119
EggNOG free text desc.3-methyl-2-oxobutanoate hydroxymethyltransferase activity
EggNOG OGsCOG0413@1,KOG2949@2759
EC2.1.2.11
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPyruvate/Phosphoenolpyruvate kinase-like domain
Ec32 orthologEc-01_001700.1
Exons6
Model size1754
Cds size762
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11086.941.1prot_Ecto-sp9_F_contig11086.941.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11086 752..3638 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928348.4723148-UTR-Ecto-sp9_F_contig11086:60..7511622928348.4723148-UTR-Ecto-sp9_F_contig11086:60..751Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11086 61..751 -
1692277840.8539774-UTR-Ecto-sp9_F_contig11086:60..7511692277840.8539774-UTR-Ecto-sp9_F_contig11086:60..751Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11086 61..751 -
1622928348.590038-UTR-Ecto-sp9_F_contig11086:3638..39391622928348.590038-UTR-Ecto-sp9_F_contig11086:3638..3939Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11086 3639..3939 -
1692277840.932586-UTR-Ecto-sp9_F_contig11086:3638..39391692277840.932586-UTR-Ecto-sp9_F_contig11086:3638..3939Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11086 3639..3939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928348.501742-CDS-Ecto-sp9_F_contig11086:751..9041622928348.501742-CDS-Ecto-sp9_F_contig11086:751..904Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 752..904 -
1692277840.8682978-CDS-Ecto-sp9_F_contig11086:751..9041692277840.8682978-CDS-Ecto-sp9_F_contig11086:751..904Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 752..904 -
1622928348.5148351-CDS-Ecto-sp9_F_contig11086:1317..14401622928348.5148351-CDS-Ecto-sp9_F_contig11086:1317..1440Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 1318..1440 -
1692277840.8785646-CDS-Ecto-sp9_F_contig11086:1317..14401692277840.8785646-CDS-Ecto-sp9_F_contig11086:1317..1440Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 1318..1440 -
1622928348.5277212-CDS-Ecto-sp9_F_contig11086:1901..20001622928348.5277212-CDS-Ecto-sp9_F_contig11086:1901..2000Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 1902..2000 -
1692277840.8933527-CDS-Ecto-sp9_F_contig11086:1901..20001692277840.8933527-CDS-Ecto-sp9_F_contig11086:1901..2000Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 1902..2000 -
1622928348.5406668-CDS-Ecto-sp9_F_contig11086:2412..26111622928348.5406668-CDS-Ecto-sp9_F_contig11086:2412..2611Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 2413..2611 -
1692277840.903731-CDS-Ecto-sp9_F_contig11086:2412..26111692277840.903731-CDS-Ecto-sp9_F_contig11086:2412..2611Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 2413..2611 -
1622928348.5536313-CDS-Ecto-sp9_F_contig11086:3042..31641622928348.5536313-CDS-Ecto-sp9_F_contig11086:3042..3164Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 3043..3164 -
1692277840.91341-CDS-Ecto-sp9_F_contig11086:3042..31641692277840.91341-CDS-Ecto-sp9_F_contig11086:3042..3164Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 3043..3164 -
1622928348.5722954-CDS-Ecto-sp9_F_contig11086:3572..36381622928348.5722954-CDS-Ecto-sp9_F_contig11086:3572..3638Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 3573..3638 -
1692277840.9235423-CDS-Ecto-sp9_F_contig11086:3572..36381692277840.9235423-CDS-Ecto-sp9_F_contig11086:3572..3638Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11086 3573..3638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11086.941.1

>prot_Ecto-sp9_F_contig11086.941.1 ID=prot_Ecto-sp9_F_contig11086.941.1|Name=mRNA_Ecto-sp9_F_contig11086.941.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=254bp
MPFGSYEVSPKEALRTAIRFVKEGNVDAVKLEGGKNRAEHIRKVVDGGIA
VMGHVGLTPQAISVLGGFRAQGRTAVKARQVVDDALAVQEAGAFAVVVEC
VPSPVAKAVTEALEIPTIGIGAGPCTSGQVLVYHDMLGMLQHPHHAQFVP
RFCKNYASVGEEVRRGLENFRREVEGGVFPQEEHSPYKMPAGEEEQFKRL
LAKDEHERLERLALKKRALEEQDEYETISKDDDGGVEGPYGGGGGGGGGG
SKR*
back to top

mRNA from alignment at Ecto-sp9_F_contig11086:61..3939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11086.941.1 ID=mRNA_Ecto-sp9_F_contig11086.941.1|Name=mRNA_Ecto-sp9_F_contig11086.941.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3879bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11086:61..3939- (Ectocarpus species9 EcSCA_722f female)
CGTCAACGGTGATAACGTCGAAGTTTGGTACTCACGAGAGCTTTTTCAGC TACATTTCGCTTTCACCAGCAAATTTGTAAATATTTCACCCCATGGGGAT TCGAACGCACGACCTTTACGACTACATAGCGGTTTCGAGGATACCACTAT TTAGACCACCGGGGCGACCGTGGTAGATTCCACAATTTTGGTCTGCTTGT TTGTTTGTCCACCTTTTACTTTGGTCTTCGGTCTGGGTTGTTTGTGCGAC TTTCGGCAGGCAGTGGGCAGAGGCGCGCGCACGCCACTGGTGGTTGCGGA CATGCCGTTCGGCAGCTACGAAGTGTCGCCGAAAGAGGCGCTACGAACCG CCATCCGGTTCGTCAAGGTGAGAGATATGCCGAGAGGTACTTATTTGTAT TTGTGATCGTCCAGGGAACGCCCGCATGTTAGCGGAACCAGCGTAATGGT AACGAAGTAGAGAGTAATCTACCCGGTGGTCCGTGTATCGAGCATCAAGT TTCGACTTTGTCAAGCGTGCCAGACTGTGGTGAGCGGTTTAAACTCCGTG GTCCGTCTGTTGCTGATCGTGGGTGGCGAGTCTGCACGCTGATTTTTATC TCAACAATGCATTCAGCCGGTATTTCTAAACTTTGTGAGTGCATCGCCTC GTCCGTTCGAGCGGCAGCGGCTGCCCTAACCGCGCTGCCCCCCTAGCGCG GGTCCATCGCGATTCCCTGCTCCTAACGTCGCTGCCACCCCATCTGGCCG CGTCCGATGTCTTTCCCTCGAGCAGGAGGGCAACGTAGACGCGGTAAAGC TTGAGGGGGGAAAGAACCGTGCCGAGCACATCCGAAAGGTTGTAGACGGG GGGATCGCTGTGATGGGACACGTGGGACTGACGCCGCAGGCGATCAGGTG AGGGAGGAGAGCGTGAAAAAATCGAACAAAAAAGTGTCGCCCCCTTTGCT GATACATACGTCAGGCGGTGCGCTGTGCTGTGGTGTCGTGATGCTTGCAC CTTTACCCTTGAACGTTCTTGAAAGAATGTACTCACCGTCGGTGAAATAT ATTTACTTTAATTTTGTTCTGAGCATGTTTCCAGTGTCCTCGTCCTTTCT TCGTCGGTGATCCGAGACTCATCTACCACGGGGTGGCGAAACGGTACAAT AAGTCGTCTCACCGTTCGCCCGCGGGCGCGCTCTTTTGGCTACGAACAAT CACAGCACCCACTCAAGTGCATGCATGCAGCACGCATACCGCGTCCATGC ATGTAATACGGCGACACGACTCCCCCCCCCCCCAACCTTTCTTCTTGTCC TTTTTTTGTTTTCGTGACCCTAAAAAAGTGTCTTGGGAGGGTTCCGTGCG CAGGGGAGAACGGCGGTCAAGGCGAGGCAGGTCGTGGACGACGCCTTGGC CGTGCAGGAGGCCGGCGCCTTTGCGGTGGTGGTGGAGTGCGTTCCGTCCC CGGTGGCGAAGGCCGTCACCGAGGCGCTGGAAATCCCGACGATCGGGATC GGTGCCGGGCCTTGCACCAGCGGCCAGGTGATGGTTTTTTTCATTGGTGG TTGTAGGTTGTGGTGGTAATTTGACGTAGTGGAATAGTGGAATGATCCGC TAGCTTGATTGGGACGAAGTGCTTTGCGGGGATGGCGTTTGGCGTCGAAG CCGGTCGTACCCCCCCTGCGCAGCAGCAGGACCGATAGTAGCAAGCAACA CCAGTAGCAGCAAAGCGTGTCCGGGAAAGGTTGATAAGCTGAATCATCAC GTCCATCTACAATAGTCGCTACGTAGAAGCAGCGTGAGGCAGAGGTTTGC AGCAGCAGCTAGAAACAGCATTCTTTTTTTCGTCCAAGCGCAGAGAGCGT GCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCCCTTATTCTCTCCCT TCCTTATCCATTCGAAAAAACGTACGTTTGCGCGAACAGGTTCTAGTTTA CCATGACATGCTTGGGATGCTCCAGCACCCGCACCACGCCCAGTTCGTCC CTCGATTCTGCAAGAACTACGCCAGCGTTGGCGAAGAGGTGCGGTTTCGT CGAAGACCATTCGGAGGGGGAGAAAGAGACGGTTTGGAAAGGAGCAGCCG TGTCAAAGAGTAACTTCTAGAGGCTAGAGGGCAGGGGTGAATGCTTGTCG TTCTAATAACCAAATAATAACTAAATAACAACGAGATGATGTTGGAAAGC GTCTCTCTCAGTAAGTGCATCACCAGCGTGGGTTCGATGCGAGTTACTAT CCTGTCTTTTAATCGGCAACGGTGGAAGACCCACGGGAAAACATTTCGAG CCACAACCACAAGTAAGCGGAGTCTTGCTCCCGTACGCCAATTTCCTTGG AAAGCAGACCAAATTGCGGCGAGCTCGACACACGTTCTCGCTAGCCCTCG CCCAACTCTCGAACTATTGCAGTAATCAGCAAGAACCCACCGTAGCTGCT CAAACGTTTGTTGCCCGTGACTCTCGCCCCCGCCGCCGCTTGTTGTCAGG TGCGCCGAGGGCTTGAAAACTTCCGGCGGGAGGTGGAGGGCGGCGTCTTC CCGCAAGAGGAGCACAGCCCTTACAAGATGCCGGCTGGAGAAGAGGAGCA GTTTAAGCGGCTCCTCGCGAAGGTAGATAACCTCGACGCTTTTTAAGCCC TCTCTCGTGCTACACAAGGGGATTCCCAATTGTTGCAAGCTTGGTAGGCT ACAAGGGCATGCCGCTAGAGCGAGGATGTCGAGGTCGGTCCGCGAGTGCA CTTGGTGTTGTGACCTTTTGGTGATTTTTCGTCATCGACGAGCACCTGAT GCGCTTCCGTGTTTTAGCTCAAACCCGTGGTGATGCCGTCCAAGAAAAAA TAGGGTTATCTAGCTTGTCGATGCGTCCCCTCTGGTATCACCGACAGGTT CGATGCGTAGTACTTTGCACCCCCCCGGCATTCCGTAAACAATCGTCCAA CATATCATCTCCCCTCCTCCAACACCACCTTTGATCCGTGTCGATCAAAC GTTTACTTGCTTTTCGGGGGTGATTGCGGGGGCAGGATGAACACGAGCGA CTGGAGCGGCTGGCGCTGAAGAAGAGAGCCCTCGAGGAGCAAGACGAGTA CGAGACCATCAGTAAGGATGACGATGGTGGCGTAGAGGGGCCTTACGGGG GAGGAGGAGGAGGAGGAGGAGGAGGCTCCAAACGATAGGGGATGACCATA TAGCGATAGACGCCGTAGAGTTGATACATACGGAGTATGCATATGAGAGA CTCGCTGAAGGTAGGTTGTCGCCACCGTACAGTAGGCAATGATGGCATGG GTGCAATAGCAGCATTGGCAAGAGCGGTCTTTGTAAGAGACAGTATCGCG GACGCGGACGCGCTGCATGCATGTAAAAGAGAACACCAGAAACGGGTTGG GATGGCGCACACAGCAGTTCCCCTCGCCAACCTCCATCGCGTTGTGTGTG TGGTGTGCGTTCGGCCGCGCCTAAGACGCGCCTTGTTTTTTTCGATGCGG TCGTTTAGGGACAGAATATTGCAGGATGGATGAGTTCTTGTTTGCTGAGG CATCTTCTATGTGCAGCTCCCCAAGCATGCTTGTATATCTTTCTTGTCTC CTTGCTGAGGCATGTGTATGCGTGCAGCCCCCCAAGCATGCTTGTATCCC ATTCAATTTTTGTTCGATTCGATTGGAGCCTGGCTGTCCATAGGTCGTCG TGAACGTGCTCGATTTTCATGAGCGTGTCTCGTCCCACGGGAAAAATCGA GTGTTCCGTCTCATTGCCATTGTGTGGGTTGCTCGGGTGTTATGCTGCGG CTACGCTTTGTGCTTGGCCAGCTTAGGTGTGGACTTTAAAACAATGTTGG CGTTTTTGACTTATTTTCTTGCGGTTTTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11086:61..3939-

>mRNA_Ecto-sp9_F_contig11086.941.1 ID=mRNA_Ecto-sp9_F_contig11086.941.1|Name=mRNA_Ecto-sp9_F_contig11086.941.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11086:61..3939- (Ectocarpus species9 EcSCA_722f female)
ATGCCGTTCGGCAGCTACGAAGTGTCGCCGAAAGAGGCGCTACGAACCGC
CATCCGGTTCGTCAAGATGCCGTTCGGCAGCTACGAAGTGTCGCCGAAAG
AGGCGCTACGAACCGCCATCCGGTTCGTCAAGGAGGGCAACGTAGACGCG
GTAAAGCTTGAGGGGGGAAAGAACCGTGCCGAGCACATCCGAAAGGTTGT
AGACGGGGGGATCGCTGTGATGGGACACGTGGGACTGACGCCGCAGGCGA
TCAGGAGGGCAACGTAGACGCGGTAAAGCTTGAGGGGGGAAAGAACCGTG
CCGAGCACATCCGAAAGGTTGTAGACGGGGGGATCGCTGTGATGGGACAC
GTGGGACTGACGCCGCAGGCGATCAGTGTCTTGGGAGGGTTCCGTGCGCA
GGGGAGAACGGCGGTCAAGGCGAGGCAGGTCGTGGACGACGCCTTGGCCG
TGCAGGAGGCCGGCGCCTTTGCGGTGGTGGTGGAGTGCGTTCCGTCCCCG
GTGGCGAAGGCCGTCACCGAGGCGCTGGAAATCCCGACGATCGGGATCGG
TGCCGGGCCTTGCACCAGCGGCCAGTGTCTTGGGAGGGTTCCGTGCGCAG
GGGAGAACGGCGGTCAAGGCGAGGCAGGTCGTGGACGACGCCTTGGCCGT
GCAGGAGGCCGGCGCCTTTGCGGTGGTGGTGGAGTGCGTTCCGTCCCCGG
TGGCGAAGGCCGTCACCGAGGCGCTGGAAATCCCGACGATCGGGATCGGT
GCCGGGCCTTGCACCAGCGGCCAGGTTCTAGTTTACCATGACATGCTTGG
GATGCTCCAGCACCCGCACCACGCCCAGTTCGTCCCTCGATTCTGCAAGA
ACTACGCCAGCGTTGGCGAAGAGGTTCTAGTTTACCATGACATGCTTGGG
ATGCTCCAGCACCCGCACCACGCCCAGTTCGTCCCTCGATTCTGCAAGAA
CTACGCCAGCGTTGGCGAAGAGGTGCGCCGAGGGCTTGAAAACTTCCGGC
GGGAGGTGGAGGGCGGCGTCTTCCCGCAAGAGGAGCACAGCCCTTACAAG
ATGCCGGCTGGAGAAGAGGAGCAGTTTAAGCGGCTCCTCGCGAAGGTGCG
CCGAGGGCTTGAAAACTTCCGGCGGGAGGTGGAGGGCGGCGTCTTCCCGC
AAGAGGAGCACAGCCCTTACAAGATGCCGGCTGGAGAAGAGGAGCAGTTT
AAGCGGCTCCTCGCGAAGGATGAACACGAGCGACTGGAGCGGCTGGCGCT
GAAGAAGAGAGCCCTCGAGGAGCAAGACGAGTACGAGACCATCAGTAAGG
ATGACGATGGTGGCGTAGAGGGGCCTTACGGGGGAGGAGGAGGAGGAGGA
GGAGGAGGCTCCAAACGATAGGATGAACACGAGCGACTGGAGCGGCTGGC
GCTGAAGAAGAGAGCCCTCGAGGAGCAAGACGAGTACGAGACCATCAGTA
AGGATGACGATGGTGGCGTAGAGGGGCCTTACGGGGGAGGAGGAGGAGGA
GGAGGAGGAGGCTCCAAACGATAG
back to top