mRNA_Ecto-sp9_F_contig11078.938.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11078.938.1
Unique NamemRNA_Ecto-sp9_F_contig11078.938.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11078.938.1 vs.
Match: STI1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.750e-31
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:   76 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 255
            DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF
Sbjct:   26 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 85
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BLAST of mRNA_Ecto-sp9_F_contig11078.938.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.130e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:   76 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 255
            DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF
Sbjct:  828 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 887
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BLAST of mRNA_Ecto-sp9_F_contig11078.938.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZ43_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.320e-11
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   88 KMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 255
            K    P  MEA QKA  N  + AA+ DV  NG+SAMSKY  DPEI+A + ELKGLF
Sbjct:   44 KAEGKPGMMEALQKAAQNPKLKAAVLDVQANGISAMSKYASDPEIMATLNELKGLF 99
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BLAST of mRNA_Ecto-sp9_F_contig11078.938.1 vs.
Match: Tyrosine--tRNA (ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNM3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.860e-6
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   79 MIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEEL 243
            M+  +M+NP+A  AFQ+AQ N  VMAA+QDV  N  +  SKY +D EI +I+ EL
Sbjct:  357 MLASIMSNPRAQAAFQRAQRNPKVMAALQDVLANPGN-FSKYANDKEISSILNEL 410
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BLAST of mRNA_Ecto-sp9_F_contig11078.938.1 vs.
Match: Uncharacterized (protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PNJ0_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.690e-5
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   76 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 255
            D+I K++ NP+    F    SN  V AAI D++QN M+ M KYQ+DPEI+ ++E++  LF
Sbjct:  419 DVISKVLENPELASGF----SNPKVQAAIFDISQNPMNVM-KYQEDPEIMKVLEKVTELF 473
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BLAST of mRNA_Ecto-sp9_F_contig11078.938.1 vs.
Match: Uncharacterized (protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MID1_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 8.030e-5
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   76 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 255
            D+I K++ NP     F    +N  V AAI D++QN M+ M KYQ+DPEI+ ++E++  LF
Sbjct:  378 DVISKVLENPDLASGF----ANPKVQAAIFDISQNPMNVM-KYQEDPEIMKVLEKVTELF 432
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11078.938.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
STI11.750e-31100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.130e-27100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical4.320e-1157.14protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Tyrosine--tRNA6.860e-650.91ligase n=1 Tax=Nannochloropsis salina CCMP1776 Tax... [more]
Uncharacterized1.690e-545.00protein n=1 Tax=Raphidocelis subcapitata TaxID=307... [more]
Uncharacterized8.030e-543.33protein n=1 Tax=Monoraphidium neglectum TaxID=1453... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11078contigEcto-sp9_F_contig11078:1024..1644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.6e-23
Seed eggNOG ortholog2880.D7G4D5
KEGG koko:K22262
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_009040.1
Exons2
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928348.1193972-CDS-Ecto-sp9_F_contig11078:1023..11701622928348.1193972-CDS-Ecto-sp9_F_contig11078:1023..1170Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11078 1024..1170 +
1692277840.717777-CDS-Ecto-sp9_F_contig11078:1023..11701692277840.717777-CDS-Ecto-sp9_F_contig11078:1023..1170Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11078 1024..1170 +
1622928348.1605206-CDS-Ecto-sp9_F_contig11078:1533..16441622928348.1605206-CDS-Ecto-sp9_F_contig11078:1533..1644Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11078 1534..1644 +
1692277840.7284667-CDS-Ecto-sp9_F_contig11078:1533..16441692277840.7284667-CDS-Ecto-sp9_F_contig11078:1533..1644Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11078 1534..1644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11078.938.1prot_Ecto-sp9_F_contig11078.938.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11078 1024..1644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11078.938.1

>prot_Ecto-sp9_F_contig11078.938.1 ID=prot_Ecto-sp9_F_contig11078.938.1|Name=mRNA_Ecto-sp9_F_contig11078.938.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=86bp
MGGAGGAGGGGAPGGGGGGGMGGMGDMIGKMMNNPKAMEAFQKAQSNPKV
MAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF*
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mRNA from alignment at Ecto-sp9_F_contig11078:1024..1644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11078.938.1 ID=mRNA_Ecto-sp9_F_contig11078.938.1|Name=mRNA_Ecto-sp9_F_contig11078.938.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=621bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11078:1024..1644+ (Ectocarpus species9 EcSCA_722f female)
ATGGGAGGAGCAGGCGGTGCGGGGGGGGGCGGTGCGCCAGGAGGAGGGGG
GGGCGGAGGGATGGGAGGCATGGGTGACATGATCGGGAAGATGATGAACA
ACCCGAAGGCCATGGAGGCGTTCCAGAAGGCGCAGAGCAATCCGAAGGTA
AGCGTTTTGGGAAGGACTCAGTTTGACGAAATGCGGTCTTAGTTGTCTTG
CAAGAGAGAGAAAGAGTTGGGTTGGCTCACTGTGCACCCGCTTCCCCGAG
ACGTAGGCCATGAACATGTATTTCTTCATACCCTCTTCCGTTTATCATAT
TCGAAAGGGCACAGAATGTTGAGGGGGTTTAACGATTGTGAGGAAGGAAG
ACTGAAAATACGGTAAAACACCTCTTCATGATCAGCATGCCGCGACATGT
TCCGTCGTCCCTCCCTGTGCATTACAAATGTGACGACCATTTTTGTTGTT
GCGTGTTTCCTCTACTCCTTTTTTTATCTCCTGGTGCCGCGTGTACGCGA
CCGCACGTAGGTCATGGCCGCCATCCAAGACGTTACCCAGAACGGCATGA
GCGCCATGTCCAAGTACCAAGACGACCCCGAGATCCTGGCGATCATCGAG
GAGCTCAAGGGCTTGTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11078:1024..1644+

>mRNA_Ecto-sp9_F_contig11078.938.1 ID=mRNA_Ecto-sp9_F_contig11078.938.1|Name=mRNA_Ecto-sp9_F_contig11078.938.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11078:1024..1644+ (Ectocarpus species9 EcSCA_722f female)
ATGGGAGGAGCAGGCGGTGCGGGGGGGGGCGGTGCGCCAGGAGGAGGGGG
GGGCGGAGGGATGGGAGGCATGGGTGACATGATCGGGAAGATGATGAACA
ACCCGAAGGCCATGGAGGCGTTCCAGAAGGCGCAGAGCAATCCGAAGATG
GGAGGAGCAGGCGGTGCGGGGGGGGGCGGTGCGCCAGGAGGAGGGGGGGG
CGGAGGGATGGGAGGCATGGGTGACATGATCGGGAAGATGATGAACAACC
CGAAGGCCATGGAGGCGTTCCAGAAGGCGCAGAGCAATCCGAAGGTCATG
GCCGCCATCCAAGACGTTACCCAGAACGGCATGAGCGCCATGTCCAAGTA
CCAAGACGACCCCGAGATCCTGGCGATCATCGAGGAGCTCAAGGGCTTGT
TCTGAGTCATGGCCGCCATCCAAGACGTTACCCAGAACGGCATGAGCGCC
ATGTCCAAGTACCAAGACGACCCCGAGATCCTGGCGATCATCGAGGAGCT
CAAGGGCTTGTTCTGA
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