mRNA_Ecto-sp9_F_contig11062.933.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11062.933.1
Unique NamemRNA_Ecto-sp9_F_contig11062.933.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11062.933.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM2_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 8.300e-37
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:  439 MGGGTGPYRNDSAFETVEVLRPGADTWVAGPSMCQARCGMGVTALPDGKVFAVGGYGGDLVYRSS 633
            MGGGTGPYRNDSAFETVEVLRPGADTWVAGPSMCQARCGMGVTALPDGKVFAVGGYGGDLVYRSS
Sbjct:    1 MGGGTGPYRNDSAFETVEVLRPGADTWVAGPSMCQARCGMGVTALPDGKVFAVGGYGGDLVYRSS 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11062.933.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized8.300e-37100.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11062contigEcto-sp9_F_contig11062:1613..4031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue2.9e-30
Seed eggNOG ortholog2880.D7FUM2
KEGG koko:K10442
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG4441@1,KOG4441@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKelch repeat type 1
Ec32 orthologEc-26_002180.1
Exons3
Model size747
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11062.933.1prot_Ecto-sp9_F_contig11062.933.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11062 1613..4031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928347.399021-CDS-Ecto-sp9_F_contig11062:1612..21171622928347.399021-CDS-Ecto-sp9_F_contig11062:1612..2117Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11062 1613..2117 +
1692277840.5152225-CDS-Ecto-sp9_F_contig11062:1612..21171692277840.5152225-CDS-Ecto-sp9_F_contig11062:1612..2117Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11062 1613..2117 +
1622928347.41546-CDS-Ecto-sp9_F_contig11062:3079..32131622928347.41546-CDS-Ecto-sp9_F_contig11062:3079..3213Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11062 3080..3213 +
1692277840.526372-CDS-Ecto-sp9_F_contig11062:3079..32131692277840.526372-CDS-Ecto-sp9_F_contig11062:3079..3213Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11062 3080..3213 +
1622928347.4881485-CDS-Ecto-sp9_F_contig11062:3923..40311622928347.4881485-CDS-Ecto-sp9_F_contig11062:3923..4031Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11062 3924..4031 +
1692277840.5354183-CDS-Ecto-sp9_F_contig11062:3923..40311692277840.5354183-CDS-Ecto-sp9_F_contig11062:3923..4031Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11062 3924..4031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11062.933.1

>prot_Ecto-sp9_F_contig11062.933.1 ID=prot_Ecto-sp9_F_contig11062.933.1|Name=mRNA_Ecto-sp9_F_contig11062.933.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=249bp
SRSAAGATVDRFGGVHVLGGWNSGGALSSCERLTHPLVSARQQRQRGGGL
GVNAETPACAARAPAPAPAAAAAAAAAAAAAAAVSPASLQRAAVGENGES
PVSEAAPGAVAVAAGESDWGWEALPPLRRQRCFLGAAFEPSGALLAMGGG
TGPYRNDSAFETVEVLRPGADTWVAGPSMCQARCGMGVTALPDGKVFAVG
GYGGDLVYRSSVEVLDPCAERWAAVASMKRCRTGVAATAGPNGRLYAVG
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mRNA from alignment at Ecto-sp9_F_contig11062:1613..4031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11062.933.1 ID=mRNA_Ecto-sp9_F_contig11062.933.1|Name=mRNA_Ecto-sp9_F_contig11062.933.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2419bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11062:1613..4031+ (Ectocarpus species9 EcSCA_722f female)
AGCAGGAGCGCCGCCGGCGCAACGGTGGACAGGTTCGGCGGCGTCCACGT
CCTGGGAGGGTGGAACAGCGGGGGTGCTCTGAGTTCGTGCGAACGCCTCA
CCCACCCCCTAGTCTCCGCTCGGCAGCAGCGGCAGCGGGGGGGAGGTCTC
GGGGTAAATGCCGAAACCCCCGCTTGCGCCGCGCGAGCTCCAGCTCCGGC
TCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCGG
TGTCTCCGGCATCGCTACAACGAGCTGCGGTCGGGGAAAACGGCGAGTCC
CCTGTGTCGGAGGCGGCGCCGGGGGCGGTGGCGGTGGCGGCGGGGGAATC
AGATTGGGGGTGGGAGGCGCTGCCGCCGCTGCGGCGGCAGCGGTGCTTCC
TAGGGGCGGCGTTCGAGCCGAGCGGTGCGCTGCTTGCGATGGGCGGGGGG
ACGGGGCCGTACAGGAACGACTCCGCTTTCGAGACGGTGGAGGTGCTGCG
CCCCGGTGAGTGGGAGTCAAGGGGGCGAGCATAGATTTTTGTGATGTGAT
GACGGTTGCATTGACGTACAGTACTGCTGTAGACCCTCACGGTTTTTCCC
GGACATACCCCATCTCGCCGTCCTGGTTGCATTCGCTGCTTTGGTGAGCA
CAAGGACAACGCCATTGAGGTTAGACACACGCTGCTGTGGGGAAGCAACC
TCAAGATGCTCAACGCCATTCCATGCATTCCTCTCAACGTCACACGCAGT
GCCATCAGCATCAGATGCTTCCCGTGCGCTGGTTGACATGCTTGCGCTTG
CCCCCCAAGGTTTTGGTCTCGCGTGTGTTTGTGTGCGTGGTGGAGGCGTT
TTGGGAGCCCTTTTCGGTCTAGCTTGCCTCGCCTGGCTGCGCACAGAGAC
AGTATTGCCGCCAACAGATTTCGAACGTTACTCGGTTTGTTGTAGTGAGC
GAAGTGAAGTCAACGCTGTTGTGCAGGCCAATGGGTGCCAAAGAGAAGGC
CTCGACCTGCAGCAGACGCGCAACCATCCCCGCCGTTCTTTCCCCCTCCC
TATTCGCCTGGCCAGGGCTAAAATGCAATGTGATTTGTTACGGCTCTGTA
TGTTAGGGTGTAGCGTGTTGAAGGCCACGACTGTTTTTGATGATAACAAT
TCCCCCCCCCCGCCCCCCCTTTAGCTGAAATCCGGCCTTGTCGTTGGAAA
CCCTTCGTACCCACCAGGAGGTCACCAATAACAATCACCTGAATGCAAGG
TGGTCGCAGGAAGAGGAGCCCCGTGAGACCCTCTAACGCGTGGGGACCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCGCTGGCGCGCGGGCTCGGGGGGG
GGGCCGGCGGGGGNNNNNNNNNNCGCCTGGGAGCGCGGGGGGTGGGGGAA
GGGGGTCCCCGGGGCCCCCCCTAGCGCGGGGGGCCCCCCCCCCCCCCCCC
CCCCGCGCGTTTTTCAGGCGCAGATACGTGGGTGGCCGGACCGAGCATGT
GCCAAGCTCGCTGCGGCATGGGCGTTACCGCCTTGCCAGACGGGAAGGTC
TTTGCCGTCGGCGGTTACGGGGGAGACTTGGTGTACCGGAGCTCTGTCGA
GGTGAGCTATCGATCGATCCAGTAGGCTCCTCGCGAGGATATTAAGCTTG
GTTTTAGCAGGGGAATAGGGTTAGGGAAAGGGGTACGAAACCGCCCTCTC
TATTTGATCCCTGGTATTGTAAAAATAGCAGCGAAAAATCCCCGGGAAGG
CAGTCCGACCGCGTGCGTACTGCCCCCCGGCGAGGGGAGTTTCGGCTGGG
CGGGAAGGTATGGTTATCTCCTTCTGGTTTGTGGCTTTGCCTTGACTGCG
TTTCAGATACTGCACCTTGAACCGCGCGTGTGAGCGTGGACCAGCGGCAT
ATCCATCTCTGAGTTTTTGTAGACCCCGTCTCCTTGACGGTAGTTTTGGG
TCACGCACAAACCTCAAAAATGTTTTTTGACGGGCGTGTTTGGGGATTAA
AGCACGCGTATTTGAACCCGAAGCGGAACCGCTTCCGGTTAAGGTTTATT
CTGCCCTCTGTCATCATTCTTTCTTGTCGAAATCAATTCCACGTCGCACT
GTTTGGGCATGGTATGGTACTTGCATATGTTGTAGTATAGTGTGGTGGCG
GTATCATTCATGTGTCACTGAATCATTCATGTGTCACTGATACCGTCGCT
GTGGCTCAGTCTGATTAATGCGCCTTTCTTATCGTCGATTGATTGTTGTC
TCTTGAACAAACGAACTGTCGGCATATCAATGCATGCGCCTCTTAAACCA
CGCTGCTTCAGGTTCTCGACCCGTGTGCTGAGCGATGGGCTGCAGTGGCT
TCGATGAAGCGCTGTCGCACCGGGGTGGCCGCGACGGCGGGGCCAAATGG
CCGACTCTACGCCGTTGGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11062:1613..4031+

>mRNA_Ecto-sp9_F_contig11062.933.1 ID=mRNA_Ecto-sp9_F_contig11062.933.1|Name=mRNA_Ecto-sp9_F_contig11062.933.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1494bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11062:1613..4031+ (Ectocarpus species9 EcSCA_722f female)
AGCAGGAGCGCCGCCGGCGCAACGGTGGACAGGTTCGGCGGCGTCCACGT
CCTGGGAGGGTGGAACAGCGGGGGTGCTCTGAGTTCGTGCGAACGCCTCA
CCCACCCCCTAGTCTCCGCTCGGCAGCAGCGGCAGCGGGGGGGAGGTCTC
GGGGTAAATGCCGAAACCCCCGCTTGCGCCGCGCGAGCTCCAGCTCCGGC
TCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCGG
TGTCTCCGGCATCGCTACAACGAGCTGCGGTCGGGGAAAACGGCGAGTCC
CCTGTGTCGGAGGCGGCGCCGGGGGCGGTGGCGGTGGCGGCGGGGGAATC
AGATTGGGGGTGGGAGGCGCTGCCGCCGCTGCGGCGGCAGCGGTGCTTCC
TAGGGGCGGCGTTCGAGCCGAGCGGTGCGCTGCTTGCGATGGGCGGGGGG
ACGGGGCCGTACAGGAACGACTCCGCTTTCGAGACGGTGGAGGTGCTGCG
CCCCGAGCAGGAGCGCCGCCGGCGCAACGGTGGACAGGTTCGGCGGCGTC
CACGTCCTGGGAGGGTGGAACAGCGGGGGTGCTCTGAGTTCGTGCGAACG
CCTCACCCACCCCCTAGTCTCCGCTCGGCAGCAGCGGCAGCGGGGGGGAG
GTCTCGGGGTAAATGCCGAAACCCCCGCTTGCGCCGCGCGAGCTCCAGCT
CCGGCTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
TGCGGTGTCTCCGGCATCGCTACAACGAGCTGCGGTCGGGGAAAACGGCG
AGTCCCCTGTGTCGGAGGCGGCGCCGGGGGCGGTGGCGGTGGCGGCGGGG
GAATCAGATTGGGGGTGGGAGGCGCTGCCGCCGCTGCGGCGGCAGCGGTG
CTTCCTAGGGGCGGCGTTCGAGCCGAGCGGTGCGCTGCTTGCGATGGGCG
GGGGGACGGGGCCGTACAGGAACGACTCCGCTTTCGAGACGGTGGAGGTG
CTGCGCCCCGGCGCAGATACGTGGGTGGCCGGACCGAGCATGTGCCAAGC
TCGCTGCGGCATGGGCGTTACCGCCTTGCCAGACGGGAAGGTCTTTGCCG
TCGGCGGTTACGGGGGAGACTTGGTGTACCGGAGCTCTGTCGAGGCGCAG
ATACGTGGGTGGCCGGACCGAGCATGTGCCAAGCTCGCTGCGGCATGGGC
GTTACCGCCTTGCCAGACGGGAAGGTCTTTGCCGTCGGCGGTTACGGGGG
AGACTTGGTGTACCGGAGCTCTGTCGAGGTTCTCGACCCGTGTGCTGAGC
GATGGGCTGCAGTGGCTTCGATGAAGCGCTGTCGCACCGGGGTGGCCGCG
ACGGCGGGGCCAAATGGCCGACTCTACGCCGTTGGTGTTCTCGACCCGTG
TGCTGAGCGATGGGCTGCAGTGGCTTCGATGAAGCGCTGTCGCACCGGGG
TGGCCGCGACGGCGGGGCCAAATGGCCGACTCTACGCCGTTGGT
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