mRNA_Ecto-sp9_F_contig11056.928.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11056.928.1
Unique NamemRNA_Ecto-sp9_F_contig11056.928.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11056.928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 2.980e-35
Identity = 75/85 (88.24%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    1 HEKGSLKRELASIYHYYLHPGHCPGGIQRDDDMPSSLEDINRAGADGRGEEGAANSTAQGDPAGGQGSGAIGSSSGGGGGQRALE 255
            HEKGSLKRELASIYHYYLHPGHCPGGIQRDDDMPSS ED N AGADGRGEEGAA+STAQGDP GGQGSG IGSS    GGQRALE
Sbjct:  319 HEKGSLKRELASIYHYYLHPGHCPGGIQRDDDMPSSFEDNNHAGADGRGEEGAASSTAQGDP-GGQGSGEIGSSXXXXGGQRALE 402
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11056.928.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.090e-30
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 HEKGSLKRELASIYHYYLHPGHCPGGIQRDDDMPSSLEDINRAGADGRGEEGAANSTAQGDPAGGQGSGAI 213
            H+KGSLKRELASIYHYYLHP HCPGGIQRDDDMPSS ED NRAGADGRGEEGAA+ST  GDP GGQGSGAI
Sbjct:  269 HDKGSLKRELASIYHYYLHPEHCPGGIQRDDDMPSSFEDNNRAGADGRGEEGAASSTTHGDP-GGQGSGAI 338
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11056.928.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.980e-3588.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.090e-3088.73protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11056contigEcto-sp9_F_contig11056:2259..3317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928342.5902274-CDS-Ecto-sp9_F_contig11056:2258..24271622928342.5902274-CDS-Ecto-sp9_F_contig11056:2258..2427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11056 2259..2427 -
1692277840.2909324-CDS-Ecto-sp9_F_contig11056:2258..24271692277840.2909324-CDS-Ecto-sp9_F_contig11056:2258..2427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11056 2259..2427 -
1622928342.6031501-CDS-Ecto-sp9_F_contig11056:3231..33171622928342.6031501-CDS-Ecto-sp9_F_contig11056:3231..3317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11056 3232..3317 -
1692277840.299128-CDS-Ecto-sp9_F_contig11056:3231..33171692277840.299128-CDS-Ecto-sp9_F_contig11056:3231..3317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11056 3232..3317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11056.928.1prot_Ecto-sp9_F_contig11056.928.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11056 2259..3317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11056.928.1

>prot_Ecto-sp9_F_contig11056.928.1 ID=prot_Ecto-sp9_F_contig11056.928.1|Name=mRNA_Ecto-sp9_F_contig11056.928.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
HEKGSLKRELASIYHYYLHPGHCPGGIQRDDDMPSSLEDINRAGADGRGE
EGAANSTAQGDPAGGQGSGAIGSSSGGGGGQRALE
back to top

mRNA from alignment at Ecto-sp9_F_contig11056:2259..3317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11056.928.1 ID=mRNA_Ecto-sp9_F_contig11056.928.1|Name=mRNA_Ecto-sp9_F_contig11056.928.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1059bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11056:2259..3317- (Ectocarpus species9 EcSCA_722f female)
CACGAGAAGGGGTCGCTGAAGCGAGAGCTGGCTTCGATCTACCACTACTA
CCTTCACCCTGGACACTGCCCGGGTGGTATCCAAAGGTGCGCTAAATATC
TGTTTGTTGAATGAATGCTCTGAACGCCTCGTTGTTGGTTAGATGCGTTT
TCAGGTTGTCGTTGTCTTGGTCGTTTTTGCTGTTCTTGCGGCTGTGGATG
CAGTTTTTTCGTTGTCATGGCAATCGTTGTCGTTGTTGTCGTGTTTTTAC
GACGGTCGCTATAGTTTTATGTTTGTAATGGCAGTCGTTGTCGTCGTTGT
GGTGGCTGATGTTGCTGTTGTTGTTTGCATTTCGCTCAACAGCAGTTATT
ATGGTTTGCGGTGCAGTGCTAGAATCTGGTGATGATGTTGCGTTGGCCTT
GATGTTAACGTCTAATCGTTCTGGCCTCGATGCAGTACCTCCCGTTCTCT
ACAAGCCGAAGACAACGGAAGAAATCCTCTTTTACTTGTTACCATTGGCT
TTTCCCGGCGTAACTAGAGTAGGCAGATCTTGTGGAGAAATGATGTTGCC
CGGAGTAAATCCCAGAAAACGCTGGATATGCGTCATGAATCAGACTCGTT
TTTATTTTATCCGCCGCTGATGAAATAAAACCGTCGCTCTGTTGCTGCAT
ACTCTGAGATATACTCCTGCAACCCCCTCTTGTTGAAGAACCCGAGCACC
TTTTTTTCAGTACAATACACGGAAACTTTTGTGTTTTTTCGTTCATGACG
CGAAGACGGTGTCAAATGTTTTTCCAGTTTTGGACCCGAAAACTGTTTGT
TGTTCTCCAGTTGAAGACCTAAAAATTAAAACTTTCGGTTCTCGCTTTCT
TTTCACCACTTCACTTTTTTTTTTTTTTTTGGTCTGGCAGGGATGACGAC
ATGCCGAGCTCATTGGAGGACATCAACCGTGCTGGTGCTGACGGCCGGGG
GGAGGAAGGGGCTGCGAATTCTACCGCACAAGGCGACCCCGCCGGCGGAC
AGGGAAGCGGCGCAATCGGTTCCTCTTCGGGAGGTGGTGGCGGCCAGAGG
GCGCTGGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11056:2259..3317-

>mRNA_Ecto-sp9_F_contig11056.928.1 ID=mRNA_Ecto-sp9_F_contig11056.928.1|Name=mRNA_Ecto-sp9_F_contig11056.928.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11056:2259..3317- (Ectocarpus species9 EcSCA_722f female)
CACGAGAAGGGGTCGCTGAAGCGAGAGCTGGCTTCGATCTACCACTACTA
CCTTCACCCTGGACACTGCCCGGGTGGTATCCAAAGCACGAGAAGGGGTC
GCTGAAGCGAGAGCTGGCTTCGATCTACCACTACTACCTTCACCCTGGAC
ACTGCCCGGGTGGTATCCAAAGGGATGACGACATGCCGAGCTCATTGGAG
GACATCAACCGTGCTGGTGCTGACGGCCGGGGGGAGGAAGGGGCTGCGAA
TTCTACCGCACAAGGCGACCCCGCCGGCGGACAGGGAAGCGGCGCAATCG
GTTCCTCTTCGGGAGGTGGTGGCGGCCAGAGGGCGCTGGAGGGATGACGA
CATGCCGAGCTCATTGGAGGACATCAACCGTGCTGGTGCTGACGGCCGGG
GGGAGGAAGGGGCTGCGAATTCTACCGCACAAGGCGACCCCGCCGGCGGA
CAGGGAAGCGGCGCAATCGGTTCCTCTTCGGGAGGTGGTGGCGGCCAGAG
GGCGCTGGAG
back to top