mRNA_Ecto-sp9_F_contig1105.919.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1105.919.1
Unique NamemRNA_Ecto-sp9_F_contig1105.919.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Match: Alanine (transaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G750_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 8.120e-59
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    1 KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 288
            KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG
Sbjct:    7 KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 102
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BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Match: Alanine (transaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 9.210e-41
Identity = 71/96 (73.96%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:    1 KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 288
            KVL+Y+ +AE VK  QYAVRGEIYLAA+ERIK G++VIFTNVGNPHGLGQKPLTF RQVMAL+ APFLL+DPR + MFP DAI RA+ YL ++KGG
Sbjct:    9 KVLSYEKVAESVKRAQYAVRGEIYLAASERIKKGEKVIFTNVGNPHGLGQKPLTFPRQVMALLTAPFLLDDPRTATMFPADAITRAKTYLANIKGG 104
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BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Match: glutamate--glyoxylate (aminotransferase 2-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0M0B3_RAPSA)

HSP 1 Score: 127 bits (320), Expect = 1.880e-36
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 288
            K L Y+++ E VK+CQYAVRGE+YL A+E  K GK++IFTNVGNPH LGQKPLTF RQV+AL  APFLL++P V  +FP DAI+RA+ YL    GG
Sbjct:    4 KALDYESLNENVKNCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDNPNVGMIFPADAISRAKHYLSLTSGG 99
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BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Match: Alanine (transaminase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAZ1_9STRA)

HSP 1 Score: 137 bits (344), Expect = 8.440e-36
Identity = 65/96 (67.71%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 288
            +VL YD++ + VK C+YAVRGE+Y AATER+ AGKEVIFTNVGNPHGLGQKP+TF+RQV ALV APFLLE P V  +FP D IARA+ Y+    GG
Sbjct:   50 RVLNYDSLPDHVKHCEYAVRGELYRAATERVAAGKEVIFTNVGNPHGLGQKPITFIRQVFALVSAPFLLEHPDVHRIFPRDVIARAKAYMKAAPGG 145
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BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Match: glutamate--glyoxylate (aminotransferase 2-like n=1 Tax=Cucumis melo TaxID=3656 RepID=A0A1S4DW36_CUCME)

HSP 1 Score: 129 bits (325), Expect = 1.510e-35
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 288
            K L Y++I E VK  QYAVRGE+YL A+E  K GK++IFTNVGNPH LGQKPLTF RQV+AL  APFLLEDP V  +FP DAIARA+ YL  + GG
Sbjct:    4 KALDYESINETVKKAQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLEDPNVGLIFPADAIARAKSYLSLIPGG 99
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BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Match: Isoform (2 of Glutamate--glyoxylate aminotransferase 1 n=8 Tax=Brassicaceae TaxID=3700 RepID=Q9LR30-2)

HSP 1 Score: 133 bits (335), Expect = 3.220e-35
Identity = 65/96 (67.71%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 288
            K L YDT+ E VK CQYAVRGE+YL A+E  K GK++IFTNVGNPH LGQKPLTF RQV+AL  APFLL+DP V  +FP DAIARA+ YL    GG
Sbjct:    4 KALDYDTLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGMLFPADAIARAKHYLSLTSGG 99
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BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Match: Glutamate--glyoxylate (aminotransferase 1 n=59 Tax=cellular organisms TaxID=131567 RepID=GGT1_ARATH)

HSP 1 Score: 133 bits (335), Expect = 5.490e-35
Identity = 65/96 (67.71%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 288
            K L YDT+ E VK CQYAVRGE+YL A+E  K GK++IFTNVGNPH LGQKPLTF RQV+AL  APFLL+DP V  +FP DAIARA+ YL    GG
Sbjct:    4 KALDYDTLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGMLFPADAIARAKHYLSLTSGG 99
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Match: glutamate--glyoxylate (aminotransferase 1-like n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2AC19)

HSP 1 Score: 124 bits (312), Expect = 7.160e-35
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 288
            + L Y+++ E VK  QYAVRGE+YL A+E  K GK++IFTNVGNPH LGQKPLTF RQV+AL  APFLL+DP V  +FP DAIARA+ YL    GG
Sbjct:    4 RALDYESLNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTTGG 99
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BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9END0_OPUST)

HSP 1 Score: 124 bits (311), Expect = 1.680e-34
Identity = 59/90 (65.56%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:   19 TIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 288
            ++ E VK CQYAVRGE+YL A+E  K GK++IFTNVGNPH LGQKPLTF RQV+AL  APFLL+DP V  +FP DA+ARA+ YL    GG
Sbjct:    1 SLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVIALCQAPFLLDDPNVGLLFPADAVARAKHYLAMTSGG 90
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Match: Alanine (transaminase n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DFB6_9ASTE)

HSP 1 Score: 131 bits (330), Expect = 2.880e-34
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQKPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG 288
            K L Y+ + E VK CQYAVRGE+YL A+E  K GK++IFTNVGNPH LGQKPLTF RQV+AL  APFLL+DP V  +FP DAIARA++YL    GG
Sbjct:    4 KPLDYENLNENVKKCQYAVRGELYLRASELQKQGKKIIFTNVGNPHALGQKPLTFPRQVIALCQAPFLLDDPNVEHIFPADAIARAKQYLAMTSGG 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1105.919.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Alanine8.120e-59100.00transaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
Alanine9.210e-4173.96transaminase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
glutamate--glyoxylate1.880e-3663.54aminotransferase 2-like n=1 Tax=Raphanus sativus T... [more]
Alanine8.440e-3667.71transaminase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
glutamate--glyoxylate1.510e-3566.67aminotransferase 2-like n=1 Tax=Cucumis melo TaxID... [more]
Isoform3.220e-3567.712 of Glutamate--glyoxylate aminotransferase 1 n=8 ... [more]
Glutamate--glyoxylate5.490e-3567.71aminotransferase 1 n=59 Tax=cellular organisms Tax... [more]
glutamate--glyoxylate7.160e-3563.54aminotransferase 1-like n=1 Tax=Syzygium oleosum T... [more]
Uncharacterized1.680e-3465.56protein (Fragment) n=1 Tax=Opuntia streptacantha T... [more]
Alanine2.880e-3465.63transaminase n=3 Tax=Cuscuta sect. Cleistogrammica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1105contigEcto-sp9_F_contig1105:191..764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.6
Seed ortholog evalue2.7e-48
Seed eggNOG ortholog2880.D7G750
Preferred nameALAT
KEGG rclassRC00006,RC00008,RC00018
KEGG koko:K00814,ko:K14272
KEGG ReactionR00258,R00369,R00372
KEGG Pathwayko00220,ko00250,ko00260,ko00630,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00220,map00250,map00260,map00630,map00710,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00171,M00532
GOsGO:0001666,GO:0003674,GO:0003824,GO:0004021,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005777,GO:0006950,GO:0008150,GO:0008152,GO:0008453,GO:0008483,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009853,GO:0009987,GO:0016020,GO:0016740,GO:0016769,GO:0036293,GO:0042579,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0047635,GO:0047958,GO:0048046,GO:0050896,GO:0070482
EggNOG free text desc.alanine aminotransferase
EggNOG OGsCOG0436@1,KOG0258@2759
Ec32 ortholog descriptionGlutamate:glyoxylate aminotransferase
Ec32 orthologEc-01_011040.1
EC2.6.1.2,2.6.1.4,2.6.1.44
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928339.1117651-CDS-Ecto-sp9_F_contig1105:190..3041622928339.1117651-CDS-Ecto-sp9_F_contig1105:190..304Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1105 191..304 -
1692277839.6720119-CDS-Ecto-sp9_F_contig1105:190..3041692277839.6720119-CDS-Ecto-sp9_F_contig1105:190..304Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1105 191..304 -
1622928339.1219902-CDS-Ecto-sp9_F_contig1105:590..7641622928339.1219902-CDS-Ecto-sp9_F_contig1105:590..764Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1105 591..764 -
1692277839.6882515-CDS-Ecto-sp9_F_contig1105:590..7641692277839.6882515-CDS-Ecto-sp9_F_contig1105:590..764Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1105 591..764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1105.919.1prot_Ecto-sp9_F_contig1105.919.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1105 191..764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1105.919.1

>prot_Ecto-sp9_F_contig1105.919.1 ID=prot_Ecto-sp9_F_contig1105.919.1|Name=mRNA_Ecto-sp9_F_contig1105.919.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=96bp
KVLTYDTIAECVKDCQYAVRGEIYLAATERIKAGKEVIFTNVGNPHGLGQ
KPLTFLRQVMALVMAPFLLEDPRVSDMFPGDAIARAREYLVHVKGG
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mRNA from alignment at Ecto-sp9_F_contig1105:191..764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1105.919.1 ID=mRNA_Ecto-sp9_F_contig1105.919.1|Name=mRNA_Ecto-sp9_F_contig1105.919.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=574bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1105:191..764- (Ectocarpus species9 EcSCA_722f female)
AAGGTCTTGACATACGACACAATCGCCGAATGCGTCAAGGACTGCCAGTA
CGCTGTCCGCGGGGAGATCTACCTTGCGGCAACCGAGCGCATCAAGGCGG
GCAAGGAGGTCATCTTCACCAACGTGGGCAACCCCCATGGCCTGGGGCAG
AAACCCCTCACGTTCCTTCGCCAGGTGAGAAATTGGAGGGTGGACGTTGT
GGGTGGCTTGTGAGGTCGAGCTGTGGGCTTGTGTTGGACATGCGATTGTG
CATGCACGGTCGGCCGGACCATTTGCGATGCTGCTGCTGCCGTGTGTCGT
GGACGGACGCGACTGTGACGTTTGCCCGCACATCTCACGCTGGGCAGTGT
AAGGGCGGTTGGTGCCTTGCTCTGGCTCCCACCGCATCATCGGCTACAAT
GTAGCGCTCGCTCACTCGCCGTTCGATTCTATCGGTGTGATCACACCGTT
GTCGCATCAGGTGATGGCCCTCGTCATGGCTCCGTTTTTGCTCGAGGATC
CTCGCGTGAGCGACATGTTCCCCGGTGACGCGATCGCCAGAGCACGCGAA
TACCTCGTCCACGTCAAGGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1105:191..764-

>mRNA_Ecto-sp9_F_contig1105.919.1 ID=mRNA_Ecto-sp9_F_contig1105.919.1|Name=mRNA_Ecto-sp9_F_contig1105.919.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1105:191..764- (Ectocarpus species9 EcSCA_722f female)
AAGGTCTTGACATACGACACAATCGCCGAATGCGTCAAGGACTGCCAGTA
CGCTGTCCGCGGGGAGATCTACCTTGCGGCAACCGAGCGCATCAAGGCGG
GCAAGGAGGTCATCTTCACCAACGTGGGCAACCCCCATGGCCTGGGGCAG
AAACCCCTCACGTTCCTTCGCCAGAAGGTCTTGACATACGACACAATCGC
CGAATGCGTCAAGGACTGCCAGTACGCTGTCCGCGGGGAGATCTACCTTG
CGGCAACCGAGCGCATCAAGGCGGGCAAGGAGGTCATCTTCACCAACGTG
GGCAACCCCCATGGCCTGGGGCAGAAACCCCTCACGTTCCTTCGCCAGGT
GATGGCCCTCGTCATGGCTCCGTTTTTGCTCGAGGATCCTCGCGTGAGCG
ACATGTTCCCCGGTGACGCGATCGCCAGAGCACGCGAATACCTCGTCCAC
GTCAAGGGGGGCGTGATGGCCCTCGTCATGGCTCCGTTTTTGCTCGAGGA
TCCTCGCGTGAGCGACATGTTCCCCGGTGACGCGATCGCCAGAGCACGCG
AATACCTCGTCCACGTCAAGGGGGGC
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