mRNA_Ecto-sp9_F_contig11045.916.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11045.916.1
Unique NamemRNA_Ecto-sp9_F_contig11045.916.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11045.916.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G235_ECTSI)

HSP 1 Score: 488 bits (1257), Expect = 2.300e-172
Identity = 266/311 (85.53%), Postives = 270/311 (86.82%), Query Frame = 1 
Query:    1 MTSLSWDDEEETAASNVRWQGRTLINFVAGRSRLRALPVVIHILPKDIEWFSADASLFDELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYTGDDIESANGGSXXXXXXXXXXXXXXXXXXXXXXXXXXPAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTSKPAAADQEALDVEAIGRRSGAGTGATVGVQEGPRNAGLLTWLWGGGGDXXXXXXXXVKGGVRQHFIGSASWQGKSPSEQRREDDD-DIQRAIALSLAVEPRAEGGGIEESKG 930
            M S+SWDDEEETAASNVRWQGRTLINFVAGRSRLR LPVVIHILPKDI WFSADASLFDELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYTGDDIE AN GS                XXXXXXX   PAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTS PAAADQEALDVEAIGRRSGAGTGATV VQ GPR+ GLLTWLWG GG+        VKGGVRQHFIGSASWQGKSPSEQRRE    DIQRAIALSLAVEPRAEGGG+EESKG
Sbjct:    1 MASVSWDDEEETAASNVRWQGRTLINFVAGRSRLRTLPVVIHILPKDIGWFSADASLFDELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYTGDDIERANRGSSSAGSSKGKRCVGSNSXXXXXXX---PAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTSTPAAADQEALDVEAIGRRSGAGTGATVDVQGGPRDTGLLTWLWGVGGEGGGSAAGGVKGGVRQHFIGSASWQGKSPSEQRREXXXXDIQRAIALSLAVEPRAEGGGVEESKG 308
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BLAST of mRNA_Ecto-sp9_F_contig11045.916.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.890e-24
Identity = 65/203 (32.02%), Postives = 111/203 (54.68%), Query Frame = 1 
Query:   13 SWDDEEETAASNVRWQGRTLINFVAGRSRLRAL-PVVIHILPKDIEWFSADAS-LFDELKLLLRERVIS------ATGNGDKDAEAPK-----SRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYTGDDIESANGGSXXXXXXXXXXXXXXXXXXXXXXXXXXPAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQF 582
            S +D +   + +  WQ R  IN + G +R + + P+V+H+LP+D+ W++A +  L++EL+ LL+++VI+      +   GD++ E        SR++AR+ E C+QGE LQFT+R+R T P Y+++++  + + +A                              PA+  LPL+E+TLL WV+ FD  +PY P+P E    F
Sbjct:    5 SRNDAQAAVSVSRAWQPRNCINLLIGDARRKQIMPLVVHLLPQDLAWWNASSDKLWEELQRLLKDQVITPYLATPSAVTGDEEEEKSTDAISTSRRKARRGEKCVQGEGLQFTFRFRPTKPVYSIITF--NSVPAAT------------------QQQQTASKQAAPAYASLPLNEATLLAWVFKFDPANPYAPLPTETVEVF 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11045.916.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.300e-17285.53protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G235... [more]
Uncharacterized2.890e-2432.02protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11045contigEcto-sp9_F_contig11045:1982..3658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003670.1
Exons3
Model size933
Cds size933
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11045.916.1prot_Ecto-sp9_F_contig11045.916.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11045 1982..3658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928338.8531847-CDS-Ecto-sp9_F_contig11045:1981..21401622928338.8531847-CDS-Ecto-sp9_F_contig11045:1981..2140Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11045 1982..2140 +
1692277839.5441377-CDS-Ecto-sp9_F_contig11045:1981..21401692277839.5441377-CDS-Ecto-sp9_F_contig11045:1981..2140Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11045 1982..2140 +
1622928338.8669338-CDS-Ecto-sp9_F_contig11045:2579..27581622928338.8669338-CDS-Ecto-sp9_F_contig11045:2579..2758Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11045 2580..2758 +
1692277839.551673-CDS-Ecto-sp9_F_contig11045:2579..27581692277839.551673-CDS-Ecto-sp9_F_contig11045:2579..2758Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11045 2580..2758 +
1622928338.8782969-CDS-Ecto-sp9_F_contig11045:3063..36581622928338.8782969-CDS-Ecto-sp9_F_contig11045:3063..3658Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11045 3064..3658 +
1692277839.5603502-CDS-Ecto-sp9_F_contig11045:3063..36581692277839.5603502-CDS-Ecto-sp9_F_contig11045:3063..3658Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11045 3064..3658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11045.916.1

>prot_Ecto-sp9_F_contig11045.916.1 ID=prot_Ecto-sp9_F_contig11045.916.1|Name=mRNA_Ecto-sp9_F_contig11045.916.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=311bp
MTSLSWDDEEETAASNVRWQGRTLINFVAGRSRLRALPVVIHILPKDIEW
FSADASLFDELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGER
LQFTYRYRKTLPRYTVLSYTGDDIESANGGSSSAGSSKGKRSVGSNSSGG
GGGGGGGPAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTSK
PAAADQEALDVEAIGRRSGAGTGATVGVQEGPRNAGLLTWLWGGGGDGGG
SAAGGVKGGVRQHFIGSASWQGKSPSEQRREDDDDIQRAIALSLAVEPRA
EGGGIEESKG*
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mRNA from alignment at Ecto-sp9_F_contig11045:1982..3658+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11045.916.1 ID=mRNA_Ecto-sp9_F_contig11045.916.1|Name=mRNA_Ecto-sp9_F_contig11045.916.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1677bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11045:1982..3658+ (Ectocarpus species9 EcSCA_722f female)
ATGACGTCCTTATCGTGGGATGACGAGGAGGAGACGGCGGCGAGCAACGT
TCGATGGCAAGGGAGAACACTCATCAACTTTGTGGCTGGAAGATCCAGAC
TGCGGGCGCTTCCGGTTGTGATCCACATTCTGCCAAAGGACATCGAGTGG
TTTTCGGCGGTGAGGTTGTTGTTCACTGGTGCATGAAAGCAATAGCCTCT
GTTTGATTTTTCAGGTTCATGTGTTGAGCTCTATGGCACAAAAGATGTCG
GAAATGATGTCGCCCGGATCACACTCAGTGCGTGGACTTGTATGTACCCG
TCGCCGCCGCCGGGCGCCGTTCTGGCACTACAGAGTAGTGGCTACATGTA
GATCACCCGTCAAAAGTGACCCGCTCGACCTCTGTTGGCCCTATCTATTA
GCTTTGAATAAACAGTATCGAGACATTTCAGCTATGTAGATTGAGGCACG
CAGCACCGACTGTCTGTCGTCTGTCGAGTACGAAACAATGACATTCCACC
GCAACATTGTACGATAGGCATAAACAAGCACCCCTAAAACAACGATTGTA
GGGAACATCTCTCCCTGTTTCTGTGCCGTGCTTGGTTCGGATCTCCAGGA
TGCGTCCCTCTTCGACGAACTCAAGCTGCTGCTCCGAGAGCGGGTCATCT
CCGCCACTGGCAACGGCGACAAGGATGCCGAAGCACCCAAGTCCCGAAAG
CGCGCCAGAAAGGAGGAGGTGTGCATACAGGGCGAACGGCTTCAGTTCAC
GTACCGCTACAGAAAGACCTTGCCCAGGTGAGCAAGCGAATGGCAAACCA
TGCTGTGCGTATTGCCCCGGACGTGTGTGCATGCTTACTTCACAAGGTTT
GCATAAGATTCGGGCCGATTCGACCGGCTTGGCGGGGTTGACTTGTTCCG
CCGCACAAGTGGTACCCCTTCTATGTTGAGAAGCAAGCACTATAATAGGT
AGGCCAGGAGAACTGTTTTTCAGCGCCTGTACGGCTTGTGCTTGTGGAAG
GTCGGATTTTCTACGTTTGCTTGCTGGCACATGTTTGTGGAGTATAGCAC
ATAATGCAACACACATCGCGCTTGCGTTTCAGGTACACTGTTCTGTCTTA
CACCGGAGACGACATCGAGAGCGCCAATGGAGGCAGCAGCTCCGCGGGAA
GCAGCAAAGGAAAACGTTCTGTTGGTAGCAATAGCAGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCCCAGCTTTCCGCCACCTCCCCCTCTCGGAGAGCAC
GCTACTGGTCTGGGTATACCCGTTCGACAAAGATGACCCATACCGCCCGG
TTCCCAACGAGGCCGCCCTGCAGTTCGCATCTTCGACATCAAAACCGGCG
GCAGCCGACCAAGAAGCGCTTGACGTCGAAGCCATCGGGAGGCGTTCGGG
AGCGGGGACAGGGGCTACGGTTGGCGTGCAGGAGGGTCCGCGAAATGCCG
GTTTGTTGACGTGGTTGTGGGGAGGTGGGGGGGATGGAGGCGGCAGCGCA
GCAGGAGGTGTGAAGGGGGGCGTGAGGCAGCACTTCATCGGCAGCGCCTC
GTGGCAAGGAAAATCACCCTCGGAGCAACGACGAGAAGATGACGATGACA
TCCAGCGAGCCATTGCTTTGTCTCTCGCGGTTGAGCCGAGAGCGGAGGGC
GGCGGGATAGAAGAGAGCAAAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11045:1982..3658+

>mRNA_Ecto-sp9_F_contig11045.916.1 ID=mRNA_Ecto-sp9_F_contig11045.916.1|Name=mRNA_Ecto-sp9_F_contig11045.916.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1866bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11045:1982..3658+ (Ectocarpus species9 EcSCA_722f female)
ATGACGTCCTTATCGTGGGATGACGAGGAGGAGACGGCGGCGAGCAACGT
TCGATGGCAAGGGAGAACACTCATCAACTTTGTGGCTGGAAGATCCAGAC
TGCGGGCGCTTCCGGTTGTGATCCACATTCTGCCAAAGGACATCGAGTGG
TTTTCGGCGATGACGTCCTTATCGTGGGATGACGAGGAGGAGACGGCGGC
GAGCAACGTTCGATGGCAAGGGAGAACACTCATCAACTTTGTGGCTGGAA
GATCCAGACTGCGGGCGCTTCCGGTTGTGATCCACATTCTGCCAAAGGAC
ATCGAGTGGTTTTCGGCGGATGCGTCCCTCTTCGACGAACTCAAGCTGCT
GCTCCGAGAGCGGGTCATCTCCGCCACTGGCAACGGCGACAAGGATGCCG
AAGCACCCAAGTCCCGAAAGCGCGCCAGAAAGGAGGAGGTGTGCATACAG
GGCGAACGGCTTCAGTTCACGTACCGCTACAGAAAGACCTTGCCCAGGAT
GCGTCCCTCTTCGACGAACTCAAGCTGCTGCTCCGAGAGCGGGTCATCTC
CGCCACTGGCAACGGCGACAAGGATGCCGAAGCACCCAAGTCCCGAAAGC
GCGCCAGAAAGGAGGAGGTGTGCATACAGGGCGAACGGCTTCAGTTCACG
TACCGCTACAGAAAGACCTTGCCCAGGTACACTGTTCTGTCTTACACCGG
AGACGACATCGAGAGCGCCAATGGAGGCAGCAGCTCCGCGGGAAGCAGCA
AAGGAAAACGTTCTGTTGGTAGCAATAGCAGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCCCAGCTTTCCGCCACCTCCCCCTCTCGGAGAGCACGCTACT
GGTCTGGGTATACCCGTTCGACAAAGATGACCCATACCGCCCGGTTCCCA
ACGAGGCCGCCCTGCAGTTCGCATCTTCGACATCAAAACCGGCGGCAGCC
GACCAAGAAGCGCTTGACGTCGAAGCCATCGGGAGGCGTTCGGGAGCGGG
GACAGGGGCTACGGTTGGCGTGCAGGAGGGTCCGCGAAATGCCGGTTTGT
TGACGTGGTTGTGGGGAGGTGGGGGGGATGGAGGCGGCAGCGCAGCAGGA
GGTGTGAAGGGGGGCGTGAGGCAGCACTTCATCGGCAGCGCCTCGTGGCA
AGGAAAATCACCCTCGGAGCAACGACGAGAAGATGACGATGACATCCAGC
GAGCCATTGCTTTGTCTCTCGCGGTTGAGCCGAGAGCGGAGGGCGGCGGG
ATAGAAGAGAGCAAAGGGTGAGTACACTGTTCTGTCTTACACCGGAGACG
ACATCGAGAGCGCCAATGGAGGCAGCAGCTCCGCGGGAAGCAGCAAAGGA
AAACGTTCTGTTGGTAGCAATAGCAGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCCCAGCTTTCCGCCACCTCCCCCTCTCGGAGAGCACGCTACTGGTCT
GGGTATACCCGTTCGACAAAGATGACCCATACCGCCCGGTTCCCAACGAG
GCCGCCCTGCAGTTCGCATCTTCGACATCAAAACCGGCGGCAGCCGACCA
AGAAGCGCTTGACGTCGAAGCCATCGGGAGGCGTTCGGGAGCGGGGACAG
GGGCTACGGTTGGCGTGCAGGAGGGTCCGCGAAATGCCGGTTTGTTGACG
TGGTTGTGGGGAGGTGGGGGGGATGGAGGCGGCAGCGCAGCAGGAGGTGT
GAAGGGGGGCGTGAGGCAGCACTTCATCGGCAGCGCCTCGTGGCAAGGAA
AATCACCCTCGGAGCAACGACGAGAAGATGACGATGACATCCAGCGAGCC
ATTGCTTTGTCTCTCGCGGTTGAGCCGAGAGCGGAGGGCGGCGGGATAGA
AGAGAGCAAAGGGTGA
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