mRNA_Ecto-sp9_F_contig11036.909.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Match: DUF2407_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP2_9PHAE) HSP 1 Score: 270 bits (690), Expect = 3.860e-85 Identity = 145/167 (86.83%), Postives = 146/167 (87.43%), Query Frame = 3
Query: 210 QEVEDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVREFAATLPASDREGETDWDRQVESEELWMRAQPATSEFALNVSMARRTTGPGGMLTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMVQAAANRRDDEDES 710
+EVEDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVRE VESEELWMRAQPATSEFALNVSMARRTTGPGG LTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMVQAAANRRD EDES
Sbjct: 156 EEVEDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVRE-------------------VESEELWMRAQPATSEFALNVSMARRTTGPGGTLTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMVQAAANRRD-EDES 302
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C3_9STRA) HSP 1 Score: 111 bits (277), Expect = 8.100e-24 Identity = 76/212 (35.85%), Postives = 95/212 (44.81%), Query Frame = 3
Query: 231 PATRRGFDALRNNGMTRGEVTAIRGYFSAQVREFAATLPASDREG-----------------ETDWDRQVESEEL-----------------------------------------WMRAQPATSEFALNVSMARRTTGPGGM------LTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMVQ 674
PA RRGFD LR+ GMTR EV A+R YFS QV F P + + E+ WDRQ+ +EE+ WM AQ A+SEFALN + GG+ + D ++ G +RDF+FGF MG FLG IML WLWE VP RQK GI+AGV F + + Q
Sbjct: 139 PAARRGFDRLRSEGMTRAEVIAMRSYFSEQVNTFLEATPPAPQAAAGXXXXXXXQLSAAAAAESQWDRQLRAEEVGLGDVMMLIKLIMXXXXXXXXXXXESECNGQLHEEEAGSVAWMAAQSASSEFALNTARRTAAMREGGLPMAQVWASSDDEMENPEIGTSRDFVFGFIMGGFLGFIMLFWLWEPNVPHRQKGGIVAGVMFNLLINLWQ 350
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1S3_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.310e-22 Identity = 65/167 (38.92%), Postives = 92/167 (55.09%), Query Frame = 3
Query: 204 ARQEVEDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVREFAATLPASDREGETDWDRQVESEELWMRAQPATSEFALNVSM-----------ARRTTGPGGMLTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMV 671
A ++ ++ DP + GFD LR++G R EV A+R YF +R+ A L REGE++ D Q+ EE W+ Q SE+ N +R + GL D A G RDF++GF MG FLGVIML WLWE +V +RQK+GI+ GV+ + ++ V
Sbjct: 102 ATEDDDEVDPTSLHGFDRLRSSGFGRAEVLALRSYFRRHLRDHAEQL--QQREGESNRDFQMRVEEDWVAQQGRGSEWDFNTRRRESLGDDIEEGSRSLSNAHVFGPGLGDMDVAAPGSMRDFVWGFFMGFFLGVIMLFWLWERSVSQRQKMGIIFGVSLQLSLNFV 266
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Match: Ubiquitin-like (domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7V7_FISSO) HSP 1 Score: 100 bits (250), Expect = 2.520e-20 Identity = 70/177 (39.55%), Postives = 91/177 (51.41%), Query Frame = 3
Query: 189 RLFFRARQEVEDDD-----------PATRRGFDALRNN-GMTRGEVTAIRGYFSAQVREFAATLPASDRE---GETDW-DRQVESEELWMRAQPATSEFALNVSMARRTTGP---------GGMLTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGV 644
R R E ED++ P R GFD LR++ G R EV IR YFS V + PA+ E GETD R++ EE WM++Q TSEF LN+ TG GGM + G RDF++GF MG F+G++MLLW+W +VP +QKLGIL G+
Sbjct: 130 RAVRRRSDEEEDEESERLELGQRASPRRRLGFDRLRDSVGFRRSEVATIRAYFSRSVDRWIRDNPAAAEEAARGETDLVQRRLLQEEAWMQSQGPTSEFRLNMGETMEWTGSNRTDAPEWRGGMSVSV--------GTDRDFVWGFCMGFFVGLLMLLWVWIPSVPHKQKLGILTGI 298
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSC9_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.530e-19 Identity = 66/157 (42.04%), Postives = 92/157 (58.60%), Query Frame = 3
Query: 213 EVEDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVREFAATL--PASD-REGETDWDRQVESEELWMRAQPATSEFALNVSMARRTTGPGGM-LTGLDGF----DDAGS----GGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVT 647
+ E+ R GFDALRN G+TR V ++R YF++QV E+A + P D ++GET+ R++ E+ W+ AQ EFA N M P M T +G+ D+ GS G RDF++GF +G F GVIML WLWE RQK+GI+AG++
Sbjct: 128 DEEEGGAGRRLGFDALRNRGLTRSGVESLRAYFASQVDEYARSQGSPLFDLQDGETEQHRRLRWEDAWIHAQSEHGEFAANF-MPDPFAAPENMDATSGEGWGQVNDEVGSPLEEGSYRDFVWGFFLGFFFGVIMLFWLWEHG-SYRQKMGIMAGIS 282
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDD9_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 4.390e-19 Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 3
Query: 219 EDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVREFAATLPASDREGETDWDRQVESEELWMRAQPATSEFALNVSMARRTT-----GPGGMLTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMVQAAAN 686
E DDPATRRGFD LR+ ++R E+ A+R YF Q+ F + A GE+ DR EE WM +Q SEFALNV R GM + D+ G+G +F++GF MG LGV MLL L + +VPR+QK+G+L GV+ + +V A +
Sbjct: 128 ERDDPATRRGFDRLRDR-LSREEIQALRLYFYPQLSVFISQ--AERVAGESSEDRIYRLEEEWMDSQGPQSEFALNVVPTARIALDHQIDMNGMSNSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKVGLLLGVSMNFFLSVVPRAVS 283
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Match: Ubiquitin-like (domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=G4YL67_PHYSP) HSP 1 Score: 96.7 bits (239), Expect = 4.620e-19 Identity = 68/164 (41.46%), Postives = 93/164 (56.71%), Query Frame = 3
Query: 219 EDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVREF---AATLPASDREGETDWDRQVESEELWMRAQPATSEFALNVSMARRTT-----GPGGMLTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMVQAAAN 686
E DDPATRRGFD LR+ ++R E+ A+R YF Q+ + AA +P GE+ DR EE WM +Q SEFALNV R GM + D+ G+G +F++GF MG LGV MLL L + +VPR+QK+G+L GV+ + +V A +
Sbjct: 131 ERDDPATRRGFDRLRDR-LSREEIQALRLYFYPQLSVYISQAARVP-----GESSEDRIYRLEEEWMASQGPQSEFALNVVPTARIAMDTQIDMNGMNNSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKVGLLLGVSMNFFLSVVPRAVS 286
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C6L0_HYAAE) HSP 1 Score: 95.1 bits (235), Expect = 1.580e-18 Identity = 65/164 (39.63%), Postives = 93/164 (56.71%), Query Frame = 3
Query: 213 EVED-DDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVREFAATLPASDREGETDWDRQVESEELWMRAQPATSEFALNVSMARRTT-----GPGGMLTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMVQAAAN 686
+ ED +DP+TRRGFD LR+ ++R E+ A+R YF Q+ + + D EG D R E+ WM +Q SEFALNV R GM T + D+ G+G +F++GF MG LGV MLL L + +VPR+QK+G+L GV+ + +V A +
Sbjct: 126 DAEDREDPSTRRGFDRLRDR-LSREEIQALRLYFYPQLSVYISQAERVDGEGSED--RIFRLEDEWMASQGPQSEFALNVVPTARAAMDAQIDMNGMNTSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKVGLLLGVSMNFFLSVVPRAVS 284
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Match: Ubiquitin (family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADY7_PLAHL) HSP 1 Score: 93.6 bits (231), Expect = 5.220e-18 Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 3
Query: 219 EDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVREFAATLPASDREGETDWDRQVESEELWMRAQPATSEFALNV-SMARRTTGP----GGMLTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMVQAAAN 686
E DD TRRGFD LR+ ++R E+ A+R YF Q+ F + A GE+ DR EE WM +Q SEFALNV AR T GM + D+ G+G +F++GF MG LGV MLL L + +VPR+QK+G+L GV+ + +V A +
Sbjct: 125 EQDDETTRRGFDRLRDR-LSREEIQALRLYFYPQLSVFISR--AERIHGESSEDRIYRLEEEWMASQGPQSEFALNVVPTARIATDTQIDINGMSNSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKVGLLLGVSMNFFLSVVPRAVS 280
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL14_PYTOL) HSP 1 Score: 91.3 bits (225), Expect = 3.850e-17 Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 3
Query: 210 QEVEDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVREFAATLPASDREGETDWDRQVESEELWMRAQPATSEFALNVSMARRTTGPGGM-LTG-LDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTF 650
++ + DDP+ RRGFD LR+ ++R E+ A+R YF Q+ ++ + A GE+ DR EE WM +Q SEFALNV R M + G + D+ G+G +F++GF MG LGV MLL L + +VPR+QK+G+L GV+
Sbjct: 132 EQEDQDDPSRRRGFDRLRDR-LSREEIQALRLYFYPQLSQYISQ--AERVPGESSEDRIYRLEEEWMASQGPHSEFALNVVPTARIAMESQMDMNGSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKIGLLLGVSM 275 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11036.909.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11036.909.1 >prot_Ecto-sp9_F_contig11036.909.1 ID=prot_Ecto-sp9_F_contig11036.909.1|Name=mRNA_Ecto-sp9_F_contig11036.909.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=147bp MTRGEVTAIRGYFSAQVREFAATLPASDREGETDWDRQVESEELWMRAQPback to top mRNA from alignment at Ecto-sp9_F_contig11036:1874..3704- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11036.909.1 ID=mRNA_Ecto-sp9_F_contig11036.909.1|Name=mRNA_Ecto-sp9_F_contig11036.909.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1831bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11036:1874..3704- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11036:1874..3704- >mRNA_Ecto-sp9_F_contig11036.909.1 ID=mRNA_Ecto-sp9_F_contig11036.909.1|Name=mRNA_Ecto-sp9_F_contig11036.909.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11036:1874..3704- (Ectocarpus species9 EcSCA_722f female)back to top |