mRNA_Ecto-sp9_F_contig11.868.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11.868.1
Unique NamemRNA_Ecto-sp9_F_contig11.868.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL1_9PHAE)

HSP 1 Score: 508 bits (1307), Expect = 1.450e-175
Identity = 315/350 (90.00%), Postives = 318/350 (90.86%), Query Frame = 1
Query:   31 MATRLACAAASRARSSALRAGIVLKPPRCRADPSRGTAAALISSSSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQGGNVGIAGTTSSAAADAKAGSAAEPLSNTGSDPSSTITRGADSXXXXXXXXXXXXXNRGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTVKNVKDFKA 1080
            MATRLAC+AASRARSSALRAGI L  PRCRADPSRG AAALISSSSC   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TQ               DAKAGSAAEP SNTGSDPSST T     XXXXXXXXXXXXX+RGPLTWGAVGLLGIVA+LAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLE KLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCV RTVKNVKDFKA
Sbjct:    1 MATRLACSAASRARSSALRAGIRLNAPRCRADPSRGIAAALISSSSCSRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQXXXXXXXXXXXXXXXDAKAGSAAEPFSNTGSDPSSTNTGXXXXXXXXXXXXXXXXXSRGPLTWGAVGLLGIVASLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEDKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDRTVKNVKDFKA 350          
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: SCO1 (homolog, cytochrome c oxidase copper chaperone n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIM6_ECTSI)

HSP 1 Score: 395 bits (1015), Expect = 7.630e-132
Identity = 253/272 (93.01%), Postives = 255/272 (93.75%), Query Frame = 1
Query:   31 MATRLACAAASRARSSALRAGIVLKPPRCRADPSRGTAAALISSSSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQGGNVGIAGTTSSAAADAKAGSAAEPLSNTGSDPSSTITRGADSXXXXXXXXXXXXXNRGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHH 846
            MATRLACAAASRARSSALRAGI LK PRCRADPSRGT AALISSSSC   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQGGN+G          DAKAGSAAEPLSNTGSDPSSTITRGADS XXXXXXXXXXXX+RGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHH
Sbjct:    1 MATRLACAAASRARSSALRAGIALKAPRCRADPSRGTVAALISSSSCSRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQGGNIGXXXXXXXXXXDAKAGSAAEPLSNTGSDPSSTITRGADSSXXXXXXXXXXXXSRGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHH 272          
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: SCO1 (family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB06_9STRA)

HSP 1 Score: 266 bits (680), Expect = 3.100e-82
Identity = 128/207 (61.84%), Postives = 160/207 (77.29%), Query Frame = 1
Query:  451 RGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGV-VKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTVKNVK 1068
            R P+TW +VGL+GIV      YY  + E++  +T S+VTS GKP LGGP+TLVDMHG P T+KDY GS+ LLYFGF HCPDICP+ELVK+G I  +   +L   V VKPVF+SVDPDRDSL QL+ YA+DFH  ++YLTGTKDQVAKAA+AYRVYFSK+ +HEE E+YL+DHSIV+YL+   G F+DF+TQR  + DCV R VK ++
Sbjct:   55 RTPVTWASVGLVGIVGAGLAWYYTNEKEKRMTQTVSQVTSIGKPNLGGPWTLVDMHGVPKTDKDYLGSYTLLYFGFAHCPDICPAELVKLGHILQEASKQLKRPVPVKPVFISVDPDRDSLRQLRFYAKDFHPDVDYLTGTKDQVAKAARAYRVYFSKSADHEEDEEYLVDHSIVMYLVNDAGAFVDFYTQRMGVPDCVERLVKELR 261          
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEH7_9STRA)

HSP 1 Score: 241 bits (614), Expect = 3.510e-73
Identity = 113/198 (57.07%), Postives = 148/198 (74.75%), Query Frame = 1
Query:  457 PLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGR 1050
            P+TW  + ++ +  T    +Y+++ E  Q +   +VTS GKPALGGP+TLVD  G+PVT+ D+ G F+LLYFGF HCPDICPSELVKVG I   L+ +    VV+PVF+SVDPDRD++ QL+HYAQDFH  I YLTGT++Q+++  KAYRVYFSK +E +E E+YL+DHSIV+YL+ P+G FLDFFTQ    AD V R
Sbjct:    2 PVTWIGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDLLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTEEQLSRMTKAYRVYFSKADEEDE-ENYLVDHSIVLYLIGPDGSFLDFFTQSMIPADIVNR 198          
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQK5_HETAK)

HSP 1 Score: 223 bits (569), Expect = 4.720e-67
Identity = 108/167 (64.67%), Postives = 131/167 (78.44%), Query Frame = 1
Query:  574 GKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGED-YLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTVKNVKD 1071
            GKPALGGP+TLVD  G P T+ D+ G +VLLYFGF  CPDICPSELVK+G I  +L+  L   + KPVF+SVDPDRDS+ QL+ YA+DFH    YLTGTKDQV KAAKAYRVYFSK +EH+  +D YL+DHSIVIYLL P+G FLDFFTQ T + DC+ +TV++V +
Sbjct:    2 GKPALGGPWTLVDQDGFPRTDNDFLGQWVLLYFGFTRCPDICPSELVKIGKIVDELDKTLPVEI-KPVFISVDPDRDSVGQLRAYAKDFHPRFTYLTGTKDQVFKAAKAYRVYFSKADEHDLNDDEYLVDHSIVIYLLGPDGKFLDFFTQSTKVTDCIQKTVRHVAE 167          
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVK0_9STRA)

HSP 1 Score: 228 bits (580), Expect = 4.900e-67
Identity = 112/211 (53.08%), Postives = 145/211 (68.72%), Query Frame = 1
Query:  451 RGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEE--HEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTVKNVKDFK 1077
            RGP++W ++ L G V   A   Y  + +  + +  ++ T  G+P +GGPFTLVD  G P T+  + G FVLLYFGF  CPDICPSELVK+G IA  L+  +   V  PVF+SVDPDRD++ Q+K Y++DFH  + +LTGTK QV K ++AYRVYFS  EE   E GEDYL+DHSIVIYL  P+G FLDFFTQ T + DCV R VK ++ +K
Sbjct:   76 RGPVSWASLTLAGFVGLGAWYVYNQEKQRMEEQALAKETIVGQPLIGGPFTLVDADGIPRTDAYFRGQFVLLYFGFTRCPDICPSELVKIGKIADALDNLVEERVT-PVFISVDPDRDTIKQIKEYSKDFHPRMHFLTGTKAQVEKVSRAYRVYFSSAEEVDWESGEDYLVDHSIVIYLNGPDGKFLDFFTQSTNVNDCVKRIVKRIQSYK 285          
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZY4_9STRA)

HSP 1 Score: 223 bits (569), Expect = 2.680e-66
Identity = 108/197 (54.82%), Postives = 145/197 (73.60%), Query Frame = 1
Query:  454 GPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMH-GKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGED-YLLDHSIVIYLLAPNGDFLDFFTQRTTIAD 1038
            GP+TW  + L G+V + AV YY  + +  Q +T S+VTS GKP LGGP+TLVD   G+ VT+  +HG   LLYFGF HCPDICP+ELV++G +  KL+ +    VV P+FV+VDP RD++AQ++ Y  DFH + + LTGT+DQVA  +KAYRVYFSK +E+EE +D YL+DHSIV+YL+ P+G+FLDFFTQ   + D
Sbjct:   21 GPITWSGLALAGVVGSGAVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTGRAVTDASFHGKHTLLYFGFTHCPDICPNELVRIGEVLDKLQAENAPEVV-PLFVTVDPRRDTIAQMQIYKADFHPAFKMLTGTRDQVADISKAYRVYFSKADENEEDDDDYLVDHSIVMYLVGPDGEFLDFFTQSARVDD 216          
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0X5_9STRA)

HSP 1 Score: 221 bits (562), Expect = 7.330e-65
Identity = 110/203 (54.19%), Postives = 140/203 (68.97%), Query Frame = 1
Query:  451 RGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLG---AGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGR 1050
            RGP+TW  + L  + +  AVGYY+++ E+K  +   EVT+TGKPA+GGP+TLVD  G+ V E  Y G + LLYFGF HCPDICPSELVKV  +  +LE + G   A  V P+FVSVDP RDS+ +LK Y +DFH  IE+LTGT +QV K  K YRVY SK +E E+G DYL+DHSIVIY    +G F DFF+Q    +D V +
Sbjct:   46 RGPVTWIGLTLTAVASFSAVGYYKIEQEKKAEKKMREVTTTGKPAVGGPWTLVDRSGRLVNETSYAGKYTLLYFGFAHCPDICPSELVKVAQVMDRLEAECGREAADRVVPLFVSVDPARDSIQKLKEYGRDFHPRIEFLTGTPEQVRKMTKLYRVYISKADETEDG-DYLVDHSIVIYFNNSDGSFQDFFSQSMRASDIVAK 247          
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFZ5_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.290e-64
Identity = 109/218 (50.00%), Postives = 149/218 (68.35%), Query Frame = 1
Query:  451 RGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHE-EGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTV-------KNVKDFKA 1080
            +GP+T+ ++    I     VG +  + + K+   A  + S GKPALGGP+ LVD  G P T+  Y G F LLYFGF  CPDICPSELVK+G I   +E K    + +P+F+SVDP RD++ Q+K+Y+QDFH SI YLTGT++QVA A+KAYRVYFSK  E+E + EDYL+DHSIV+YL++P+G+FLDFFTQ   + D V +         +N+KD ++
Sbjct:    2 KGPVTFWSLAFTAITGVGLVGMFYAEKDRKEKARAKNIRSVGKPALGGPWVLVDQDGHPRTDASYDGKFRLLYFGFTFCPDICPSELVKIGNIVKSVEKKKITDL-QPIFISVDPSRDTVGQMKNYSQDFHPSIVYLTGTREQVATASKAYRVYFSKANENENDEEDYLVDHSIVLYLVSPSGEFLDFFTQSMEVKDIVDKIAHYKEVYEQNLKDIES 218          
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Uncharacterized (protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF8_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.750e-64
Identity = 107/201 (53.23%), Postives = 142/201 (70.65%), Query Frame = 1
Query:  454 GPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGK-PVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGED-YLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGR 1050
            GP++W  + L G+V    V YY  + +  Q +T S+VTS GKP LGGP+TLVD   K PVT+  + G + LLYFGF HCPDICP+ELV++G +  KLE +    VV P+FVSVDP RD++AQ++ Y  DFH   + LTGT+DQVA   KAYRVYFSK +E+E+ +D YL+DHSIV+YL+ P+G+FLDFFTQ   + D   +
Sbjct:   36 GPVSWSGLALAGVVGGSVVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTKRPVTDASFRGQYSLLYFGFTHCPDICPNELVRIGDVLDKLESENLPEVV-PLFVSVDPKRDTIAQMQAYKADFHPKFKMLTGTRDQVADITKAYRVYFSKADENEDDDDDYLVDHSIVMYLVGPDGEFLDFFTQNARVEDIAAK 235          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.450e-17590.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
SCO17.630e-13293.01homolog, cytochrome c oxidase copper chaperone n=1... [more]
SCO13.100e-8261.84family protein n=1 Tax=Tribonema minus TaxID=30337... [more]
Uncharacterized3.510e-7357.07protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Hypothetical4.720e-6764.67protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical4.900e-6753.08protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized2.680e-6654.82protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Hypothetical7.330e-6554.19protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical1.290e-6450.00protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Uncharacterized2.750e-6453.23protein n=5 Tax=Phytophthora kernoviae TaxID=32545... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11contigEcto-sp9_F_contig11:41655..45320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score396.7
Seed ortholog evalue1.1e-107
Seed eggNOG ortholog2880.D7FIM6
KEGG koko:K07152,ko:K12818
KEGG Pathwayko03040,map03040
EggNOG free text desc.copper ion homeostasis
EggNOG OGsCOG1999@1,KOG2792@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko03041
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionSCO1 homolog, cytochrome c oxidase copper chaperone
Ec32 orthologEc-27_000320.1
Exons5
Model size1623
Cds size1053
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928332.781749-UTR-Ecto-sp9_F_contig11:41654..416841622928332.781749-UTR-Ecto-sp9_F_contig11:41654..41684Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11 41655..41684 +
1692277836.5680668-UTR-Ecto-sp9_F_contig11:41654..416841692277836.5680668-UTR-Ecto-sp9_F_contig11:41654..41684Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11 41655..41684 +
1622928332.8973591-UTR-Ecto-sp9_F_contig11:44780..453201622928332.8973591-UTR-Ecto-sp9_F_contig11:44780..45320Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11 44781..45320 +
1692277836.6337333-UTR-Ecto-sp9_F_contig11:44780..453201692277836.6337333-UTR-Ecto-sp9_F_contig11:44780..45320Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11 44781..45320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928332.799132-CDS-Ecto-sp9_F_contig11:41684..422151622928332.799132-CDS-Ecto-sp9_F_contig11:41684..42215Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 41685..42215 +
1692277836.5782833-CDS-Ecto-sp9_F_contig11:41684..422151692277836.5782833-CDS-Ecto-sp9_F_contig11:41684..42215Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 41685..42215 +
1622928332.8120868-CDS-Ecto-sp9_F_contig11:42548..427041622928332.8120868-CDS-Ecto-sp9_F_contig11:42548..42704Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 42549..42704 +
1692277836.5916-CDS-Ecto-sp9_F_contig11:42548..427041692277836.5916-CDS-Ecto-sp9_F_contig11:42548..42704Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 42549..42704 +
1622928332.827735-CDS-Ecto-sp9_F_contig11:43204..433351622928332.827735-CDS-Ecto-sp9_F_contig11:43204..43335Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 43205..43335 +
1692277836.6056995-CDS-Ecto-sp9_F_contig11:43204..433351692277836.6056995-CDS-Ecto-sp9_F_contig11:43204..43335Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 43205..43335 +
1622928332.840261-CDS-Ecto-sp9_F_contig11:43891..440721622928332.840261-CDS-Ecto-sp9_F_contig11:43891..44072Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 43892..44072 +
1692277836.6147704-CDS-Ecto-sp9_F_contig11:43891..440721692277836.6147704-CDS-Ecto-sp9_F_contig11:43891..44072Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 43892..44072 +
1622928332.8855047-CDS-Ecto-sp9_F_contig11:44726..447801622928332.8855047-CDS-Ecto-sp9_F_contig11:44726..44780Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 44727..44780 +
1692277836.6238024-CDS-Ecto-sp9_F_contig11:44726..447801692277836.6238024-CDS-Ecto-sp9_F_contig11:44726..44780Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 44727..44780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11.868.1prot_Ecto-sp9_F_contig11.868.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11 41685..44780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11.868.1

>prot_Ecto-sp9_F_contig11.868.1 ID=prot_Ecto-sp9_F_contig11.868.1|Name=mRNA_Ecto-sp9_F_contig11.868.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=351bp
MATRLACAAASRARSSALRAGIVLKPPRCRADPSRGTAAALISSSSCSRT
STTRTAASGDTNTAPASTAAAAAAAAAPAAGTQGGNVGIAGTTSSAAADA
KAGSAAEPLSNTGSDPSSTITRGADSSSSGGSGGGGGGGNRGPLTWGAVG
LLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPV
TEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVF
VSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEE
HEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTVKNVKDFKA
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mRNA from alignment at Ecto-sp9_F_contig11:41655..45320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11.868.1 ID=mRNA_Ecto-sp9_F_contig11.868.1|Name=mRNA_Ecto-sp9_F_contig11.868.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3666bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11:41655..45320+ (Ectocarpus species9 EcSCA_722f female)
ATATGACAGACGTATCGACTACCTGCAGCAATGGCCACCCGACTGGCTTG TGCAGCTGCCTCTCGAGCAAGATCGTCAGCGCTGCGGGCTGGAATTGTGT TGAAACCTCCTAGGTGTCGTGCTGATCCCTCCCGAGGGACAGCTGCTGCC CTGATCTCCTCCTCGTCCTGCTCAAGAACATCAACAACCCGCACAGCAGC AAGCGGCGACACCAACACAGCACCGGCCTCAACAGCAGCAGCCGCAGCAG CAGCCGCCGCCCCGGCAGCCGGAACACAGGGGGGAAATGTCGGCATTGCT GGCACTACCTCCTCTGCTGCTGCTGATGCAAAAGCAGGCTCGGCAGCAGA ACCGTTGAGTAACACTGGCTCAGATCCGTCCAGCACCATCACCAGAGGCG CTGACAGCAGCAGCAGCGGTGGCAGCGGCGGAGGTGGGGGCGGCGGCAAC CGAGGGCCGCTGACGTGGGGAGCTGTAGGTCTCCTCGGTATCGTGGCAAC TCTGGCAGTGGGGTACTACAGGATGAAGTGGGAGGAGAAGCAGAATCGGA CTGCATCCGAGGTGCGTTTGCGGACGTCTTGGGGCTTCGACTCACACATC AGGCGGAGTTCTGGGTTGCAGCTGTGCTGCTGTAGCCATCTAACGCTGTA CAGACAAGCTCTTCAAGAGTTATGTTATACAACACACCGGCGCAGCCGGA TGAGCAGCCTTGATTACTGGCGTCTGGTATTCTGCTACCGTACGAACAGC TGAGCTGAAACGCTTTGCCGCGCATTCCTAATATAAACAGGCCAGCAACG AGGGAAACGGAGGGGTAAAAATACCCCGTGCCGTAATCCTATGCATACAA CCAGCAGAGATATCATGTTTCTCCAACGTTCCATACAATTCCAGGTAACG TCCACCGGGAAGCCCGCGTTGGGCGGGCCGTTTACCCTCGTCGACATGCA CGGCAAGCCGGTGACGGAAAAGGACTACCACGGGTCCTTCGTGCTGCTCT ACTTCGGCTTTTGCCACTGCCCGGATATCTGCCCGTCAGAGCTGGTGAAG GTGGGACAAACGTTTCATTACATGCTGCAGCCTTCGCGGGTTTTTTCGAT TAAGGAAACATGCTGGACAAACCATGCAATCGGGGAAGTTGGTTCAGGGT TAGGGTTAGGGATAGGTTCTGCGTACCCCCTACCTGTTCCTACATCCTCA TACTCTTAATTTTTTTTTCTCGCGAAGGAGGTCCTTTCATCAGCACCCGC TTAAAAGACGTCGTACAACGGGAACCTCCAAACGTTGCGGTTGCGAGTCA CCACAGGCTGAATCACAGGTGGGGCTGAACGCGTCTCGTTCGTATTCCTT CGTGAGACGAGCGCGAAAATTGCACAGCGCACTTTTTTAAGTCCATTGCA ACCGAAGCTGCCAGAGCCTGTCTCTCTCGGCCTCGGCCTCAACGCTACAC AAGGGAAGCTTTCGGGTACACAGAGGGTTTCGAAGCTCATCCTCGGTCGC TAGCCTAACTTCCGCTGATAGTGACATGTATCTTACGTTCTTTCTAGCAG GTGGGCGCCATAGCTACCAAGCTCGAGGGTAAGCTCGGCGCCGGCGTGGT GAAGCCGGTGTTCGTGTCGGTGGATCCAGACCGAGACAGCCTGGCGCAGC TGAAGCACTACGCACAGGACTTCCACCACAGGTCAGCGAGTCTGCAGGCG GCACCACCACCTCCACCGCCACAAGCTTTGCTCTTCTGCGGAATTCCGGC GATGGAAGTTGTTTTTCAGCGGCACGCACATCTCCTTTGCTGCCCTCTCA ACACCCCGTTGCCTTCGTTTCGGTGCGGGTTGCAAGTGTACACAGCACCC GATATGAACCGACGTCCAGGCTAAGAAGTTTTATTCCGACCTAGAGGTCA TTGAAGGAGTTTCTTGTCTAGAGGGACAGAAGACGGCTGTTGGGTCCGTC ACTCTTACCTCACCGCTGCCCCGTCCTGAAATCGTTTGGAAGAAAGCCGT GTGTCGAAAGGGCACACTCCTCTGTCGTCACACGCCGAACCCCCAAGCAA CTTCTCTACACCCTTGCTTAAGTACAGCCCGAGTGCCAAAATATTGTTTC AGTAGGTACTTTTTTTTACAGTCCACAGGAGATGGGGTGCTAATAGCAGT TTTGTCAATCAGGGATTCCGATACGCCGACTCCCCTTGTGTTCTTCTCCT CACTTTCGCCACCACCGGTGCCTGGCTTGGCGAGCAGCATCGAGTACCTA ACGGGCACCAAGGACCAGGTCGCCAAGGCCGCTAAAGCTTACCGGGTGTA CTTCTCCAAGACGGAGGAGCACGAGGAGGGCGAGGACTACCTCTTGGATC ACTCCATCGTCATATACCTGCTCGCGCCCAACGGGGACTTCTTGGATTTC TTCACGCAACGAACCACGGTGAGCGATGCTTCGCGAAATGTACTCGATGT CGGTGCAGCACCCACGGTCGCAACGCCAACTGGACCAGCGGTGGTGAGTT GCGGCGGCGCTGCTGCGGTATCTTGATGGCGTTTTGCGTTTGGGGGGTGT TGATGTGTGTGTTCCGCTGTTGTCAGTAAACAATCGTCGCGCTCTCTTCC AAAATGGAATCATGCTGTCTAGAGTTTCCAATGACGACAGGGTCATGTGG AAGTACATCTATTGTTGGTTCATGTTTAGGTCAAATTTGGTGCTCTGGCG TAGGTAGCCGTGCTCTTGATGCTTCCGATATCGTCGGAGCCAGGAAAACC TTTGAACGGTTCAGGCCTGTGCTGACACATCGACAATCAACAGACTAGTG TAGGGTGTGTTTTGTCTTTGGTCTTTTTTTAGTTATCCTTTTTGGGGACG CATCGAGCTTCATTGTGCGTGGCGTCACCTCAGCGGCCTGTGTCGTATTT CGCGGCTCTCTCACAGATGTCGGGCCGTGAACACCGCGCATGTCGGACCG TTTTCCTCCGCTCGTCCGTGCTACGATATCACACACCTTGACCCAATCTT GCTGGTTGTCGTGGCCACCTGAGCTCGCCTCCGTCTGTTTCTCACCCTCC TCTTGCAACGTGGTGTGGTCAGATCGCCGACTGCGTCGGTAGGACCGTCA AGAACGTCAAAGACTTTAAGGCTTGAGCAGAAACACTGGATAGAGACAGA TGTGCGGAGGCGAGAAAGAGGAGAAGAGAGCGACTCGCCGTCTGCTCGCT GCCTGCAAACTGGACACGCAGATCTTCCGTGTTTGTTACCGTGTGGGGGG GAGGTCGAGGGTAGCGCTCTAGAATATGTTGAGTAGAAGGCATGGTGGCG TTAGTCACCCCAGGTTTTGTAGCGAGTGGGTCGCGTGTTCGCCATGCGAG GTGCGGGGCACATCAGGGATGCCTTTTAACTCGTCAAGTGTGCCGTCGGA ATCTCGCCATGCTTCGGACTAGGCTGAGGACCTTCCTTGAGAATGATGGA TGCGTCGAATTTTGTTTTGTCCTCCCAGCCGTTGAGTGTTCTCGGGGGAT CGCTTCTACGCCTTCGTTTCGCTAAACCGGGGAAACATGAAAGAAGCCCT TGGAACATTTAAACCCGACACGGCAGCTGTGCGTGGGATTCAGCTCGTAC TTTCATCCACGGCTGGAAGTTGTGTCACATAGTCAGGAAGTGACGTCTGG ACGACATCAGTGTGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11:41655..45320+

>mRNA_Ecto-sp9_F_contig11.868.1 ID=mRNA_Ecto-sp9_F_contig11.868.1|Name=mRNA_Ecto-sp9_F_contig11.868.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2106bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11:41655..45320+ (Ectocarpus species9 EcSCA_722f female)
ATGGCCACCCGACTGGCTTGTGCAGCTGCCTCTCGAGCAAGATCGTCAGC
GCTGCGGGCTGGAATTGTGTTGAAACCTCCTAGGTGTCGTGCTGATCCCT
CCCGAGGGACAGCTGCTGCCCTGATCTCCTCCTCGTCCTGCTCAAGAACA
TCAACAACCCGCACAGCAGCAAGCGGCGACACCAACACAGCACCGGCCTC
AACAGCAGCAGCCGCAGCAGCAGCCGCCGCCCCGGCAGCCGGAACACAGG
GGGGAAATGTCGGCATTGCTGGCACTACCTCCTCTGCTGCTGCTGATGCA
AAAGCAGGCTCGGCAGCAGAACCGTTGAGTAACACTGGCTCAGATCCGTC
CAGCACCATCACCAGAGGCGCTGACAGCAGCAGCAGCGGTGGCAGCGGCG
GAGGTGGGGGCGGCGGCAACCGAGGGCCGCTGACGTGGGGAGCTGTAGGT
CTCCTCGGTATCGTGGCAACTCTGGCAGTGGGGTACTACAGGATGAAGTG
GGAGGAGAAGCAGAATCGGACTGCATCCGAGATGGCCACCCGACTGGCTT
GTGCAGCTGCCTCTCGAGCAAGATCGTCAGCGCTGCGGGCTGGAATTGTG
TTGAAACCTCCTAGGTGTCGTGCTGATCCCTCCCGAGGGACAGCTGCTGC
CCTGATCTCCTCCTCGTCCTGCTCAAGAACATCAACAACCCGCACAGCAG
CAAGCGGCGACACCAACACAGCACCGGCCTCAACAGCAGCAGCCGCAGCA
GCAGCCGCCGCCCCGGCAGCCGGAACACAGGGGGGAAATGTCGGCATTGC
TGGCACTACCTCCTCTGCTGCTGCTGATGCAAAAGCAGGCTCGGCAGCAG
AACCGTTGAGTAACACTGGCTCAGATCCGTCCAGCACCATCACCAGAGGC
GCTGACAGCAGCAGCAGCGGTGGCAGCGGCGGAGGTGGGGGCGGCGGCAA
CCGAGGGCCGCTGACGTGGGGAGCTGTAGGTCTCCTCGGTATCGTGGCAA
CTCTGGCAGTGGGGTACTACAGGATGAAGTGGGAGGAGAAGCAGAATCGG
ACTGCATCCGAGGTAACGTCCACCGGGAAGCCCGCGTTGGGCGGGCCGTT
TACCCTCGTCGACATGCACGGCAAGCCGGTGACGGAAAAGGACTACCACG
GGTCCTTCGTGCTGCTCTACTTCGGCTTTTGCCACTGCCCGGATATCTGC
CCGTCAGAGCTGGTGAAGGTAACGTCCACCGGGAAGCCCGCGTTGGGCGG
GCCGTTTACCCTCGTCGACATGCACGGCAAGCCGGTGACGGAAAAGGACT
ACCACGGGTCCTTCGTGCTGCTCTACTTCGGCTTTTGCCACTGCCCGGAT
ATCTGCCCGTCAGAGCTGGTGAAGGTGGGCGCCATAGCTACCAAGCTCGA
GGGTAAGCTCGGCGCCGGCGTGGTGAAGCCGGTGTTCGTGTCGGTGGATC
CAGACCGAGACAGCCTGGCGCAGCTGAAGCACTACGCACAGGACTTCCAC
CACAGGTGGGCGCCATAGCTACCAAGCTCGAGGGTAAGCTCGGCGCCGGC
GTGGTGAAGCCGGTGTTCGTGTCGGTGGATCCAGACCGAGACAGCCTGGC
GCAGCTGAAGCACTACGCACAGGACTTCCACCACAGCATCGAGTACCTAA
CGGGCACCAAGGACCAGGTCGCCAAGGCCGCTAAAGCTTACCGGGTGTAC
TTCTCCAAGACGGAGGAGCACGAGGAGGGCGAGGACTACCTCTTGGATCA
CTCCATCGTCATATACCTGCTCGCGCCCAACGGGGACTTCTTGGATTTCT
TCACGCAACGAACCACGCATCGAGTACCTAACGGGCACCAAGGACCAGGT
CGCCAAGGCCGCTAAAGCTTACCGGGTGTACTTCTCCAAGACGGAGGAGC
ACGAGGAGGGCGAGGACTACCTCTTGGATCACTCCATCGTCATATACCTG
CTCGCGCCCAACGGGGACTTCTTGGATTTCTTCACGCAACGAACCACGAT
CGCCGACTGCGTCGGTAGGACCGTCAAGAACGTCAAAGACTTTAAGGCTT
GAATCGCCGACTGCGTCGGTAGGACCGTCAAGAACGTCAAAGACTTTAAG
GCTTGA
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