mRNA_Ecto-sp9_F_contig11.868.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL1_9PHAE) HSP 1 Score: 508 bits (1307), Expect = 1.450e-175 Identity = 315/350 (90.00%), Postives = 318/350 (90.86%), Query Frame = 1
Query: 31 MATRLACAAASRARSSALRAGIVLKPPRCRADPSRGTAAALISSSSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQGGNVGIAGTTSSAAADAKAGSAAEPLSNTGSDPSSTITRGADSXXXXXXXXXXXXXNRGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTVKNVKDFKA 1080
MATRLAC+AASRARSSALRAGI L PRCRADPSRG AAALISSSSC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TQ DAKAGSAAEP SNTGSDPSST T XXXXXXXXXXXXX+RGPLTWGAVGLLGIVA+LAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLE KLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCV RTVKNVKDFKA
Sbjct: 1 MATRLACSAASRARSSALRAGIRLNAPRCRADPSRGIAAALISSSSCSRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQXXXXXXXXXXXXXXXDAKAGSAAEPFSNTGSDPSSTNTGXXXXXXXXXXXXXXXXXSRGPLTWGAVGLLGIVASLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEDKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDRTVKNVKDFKA 350
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: SCO1 (homolog, cytochrome c oxidase copper chaperone n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIM6_ECTSI) HSP 1 Score: 395 bits (1015), Expect = 7.630e-132 Identity = 253/272 (93.01%), Postives = 255/272 (93.75%), Query Frame = 1
Query: 31 MATRLACAAASRARSSALRAGIVLKPPRCRADPSRGTAAALISSSSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQGGNVGIAGTTSSAAADAKAGSAAEPLSNTGSDPSSTITRGADSXXXXXXXXXXXXXNRGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHH 846
MATRLACAAASRARSSALRAGI LK PRCRADPSRGT AALISSSSC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQGGN+G DAKAGSAAEPLSNTGSDPSSTITRGADS XXXXXXXXXXXX+RGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHH
Sbjct: 1 MATRLACAAASRARSSALRAGIALKAPRCRADPSRGTVAALISSSSCSRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQGGNIGXXXXXXXXXXDAKAGSAAEPLSNTGSDPSSTITRGADSSXXXXXXXXXXXXSRGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHH 272
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: SCO1 (family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB06_9STRA) HSP 1 Score: 266 bits (680), Expect = 3.100e-82 Identity = 128/207 (61.84%), Postives = 160/207 (77.29%), Query Frame = 1
Query: 451 RGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGV-VKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTVKNVK 1068
R P+TW +VGL+GIV YY + E++ +T S+VTS GKP LGGP+TLVDMHG P T+KDY GS+ LLYFGF HCPDICP+ELVK+G I + +L V VKPVF+SVDPDRDSL QL+ YA+DFH ++YLTGTKDQVAKAA+AYRVYFSK+ +HEE E+YL+DHSIV+YL+ G F+DF+TQR + DCV R VK ++
Sbjct: 55 RTPVTWASVGLVGIVGAGLAWYYTNEKEKRMTQTVSQVTSIGKPNLGGPWTLVDMHGVPKTDKDYLGSYTLLYFGFAHCPDICPAELVKLGHILQEASKQLKRPVPVKPVFISVDPDRDSLRQLRFYAKDFHPDVDYLTGTKDQVAKAARAYRVYFSKSADHEEDEEYLVDHSIVMYLVNDAGAFVDFYTQRMGVPDCVERLVKELR 261
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEH7_9STRA) HSP 1 Score: 241 bits (614), Expect = 3.510e-73 Identity = 113/198 (57.07%), Postives = 148/198 (74.75%), Query Frame = 1
Query: 457 PLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGR 1050
P+TW + ++ + T +Y+++ E Q + +VTS GKPALGGP+TLVD G+PVT+ D+ G F+LLYFGF HCPDICPSELVKVG I L+ + VV+PVF+SVDPDRD++ QL+HYAQDFH I YLTGT++Q+++ KAYRVYFSK +E +E E+YL+DHSIV+YL+ P+G FLDFFTQ AD V R
Sbjct: 2 PVTWIGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDLLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTEEQLSRMTKAYRVYFSKADEEDE-ENYLVDHSIVLYLIGPDGSFLDFFTQSMIPADIVNR 198
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQK5_HETAK) HSP 1 Score: 223 bits (569), Expect = 4.720e-67 Identity = 108/167 (64.67%), Postives = 131/167 (78.44%), Query Frame = 1
Query: 574 GKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGED-YLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTVKNVKD 1071
GKPALGGP+TLVD G P T+ D+ G +VLLYFGF CPDICPSELVK+G I +L+ L + KPVF+SVDPDRDS+ QL+ YA+DFH YLTGTKDQV KAAKAYRVYFSK +EH+ +D YL+DHSIVIYLL P+G FLDFFTQ T + DC+ +TV++V +
Sbjct: 2 GKPALGGPWTLVDQDGFPRTDNDFLGQWVLLYFGFTRCPDICPSELVKIGKIVDELDKTLPVEI-KPVFISVDPDRDSVGQLRAYAKDFHPRFTYLTGTKDQVFKAAKAYRVYFSKADEHDLNDDEYLVDHSIVIYLLGPDGKFLDFFTQSTKVTDCIQKTVRHVAE 167
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVK0_9STRA) HSP 1 Score: 228 bits (580), Expect = 4.900e-67 Identity = 112/211 (53.08%), Postives = 145/211 (68.72%), Query Frame = 1
Query: 451 RGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEE--HEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTVKNVKDFK 1077
RGP++W ++ L G V A Y + + + + ++ T G+P +GGPFTLVD G P T+ + G FVLLYFGF CPDICPSELVK+G IA L+ + V PVF+SVDPDRD++ Q+K Y++DFH + +LTGTK QV K ++AYRVYFS EE E GEDYL+DHSIVIYL P+G FLDFFTQ T + DCV R VK ++ +K
Sbjct: 76 RGPVSWASLTLAGFVGLGAWYVYNQEKQRMEEQALAKETIVGQPLIGGPFTLVDADGIPRTDAYFRGQFVLLYFGFTRCPDICPSELVKIGKIADALDNLVEERVT-PVFISVDPDRDTIKQIKEYSKDFHPRMHFLTGTKAQVEKVSRAYRVYFSSAEEVDWESGEDYLVDHSIVIYLNGPDGKFLDFFTQSTNVNDCVKRIVKRIQSYK 285
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZY4_9STRA) HSP 1 Score: 223 bits (569), Expect = 2.680e-66 Identity = 108/197 (54.82%), Postives = 145/197 (73.60%), Query Frame = 1
Query: 454 GPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMH-GKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGED-YLLDHSIVIYLLAPNGDFLDFFTQRTTIAD 1038
GP+TW + L G+V + AV YY + + Q +T S+VTS GKP LGGP+TLVD G+ VT+ +HG LLYFGF HCPDICP+ELV++G + KL+ + VV P+FV+VDP RD++AQ++ Y DFH + + LTGT+DQVA +KAYRVYFSK +E+EE +D YL+DHSIV+YL+ P+G+FLDFFTQ + D
Sbjct: 21 GPITWSGLALAGVVGSGAVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTGRAVTDASFHGKHTLLYFGFTHCPDICPNELVRIGEVLDKLQAENAPEVV-PLFVTVDPRRDTIAQMQIYKADFHPAFKMLTGTRDQVADISKAYRVYFSKADENEEDDDDYLVDHSIVMYLVGPDGEFLDFFTQSARVDD 216
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0X5_9STRA) HSP 1 Score: 221 bits (562), Expect = 7.330e-65 Identity = 110/203 (54.19%), Postives = 140/203 (68.97%), Query Frame = 1
Query: 451 RGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLG---AGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGR 1050
RGP+TW + L + + AVGYY+++ E+K + EVT+TGKPA+GGP+TLVD G+ V E Y G + LLYFGF HCPDICPSELVKV + +LE + G A V P+FVSVDP RDS+ +LK Y +DFH IE+LTGT +QV K K YRVY SK +E E+G DYL+DHSIVIY +G F DFF+Q +D V +
Sbjct: 46 RGPVTWIGLTLTAVASFSAVGYYKIEQEKKAEKKMREVTTTGKPAVGGPWTLVDRSGRLVNETSYAGKYTLLYFGFAHCPDICPSELVKVAQVMDRLEAECGREAADRVVPLFVSVDPARDSIQKLKEYGRDFHPRIEFLTGTPEQVRKMTKLYRVYISKADETEDG-DYLVDHSIVIYFNNSDGSFQDFFSQSMRASDIVAK 247
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFZ5_9STRA) HSP 1 Score: 219 bits (558), Expect = 1.290e-64 Identity = 109/218 (50.00%), Postives = 149/218 (68.35%), Query Frame = 1
Query: 451 RGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHE-EGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGRTV-------KNVKDFKA 1080
+GP+T+ ++ I VG + + + K+ A + S GKPALGGP+ LVD G P T+ Y G F LLYFGF CPDICPSELVK+G I +E K + +P+F+SVDP RD++ Q+K+Y+QDFH SI YLTGT++QVA A+KAYRVYFSK E+E + EDYL+DHSIV+YL++P+G+FLDFFTQ + D V + +N+KD ++
Sbjct: 2 KGPVTFWSLAFTAITGVGLVGMFYAEKDRKEKARAKNIRSVGKPALGGPWVLVDQDGHPRTDASYDGKFRLLYFGFTFCPDICPSELVKIGNIVKSVEKKKITDL-QPIFISVDPSRDTVGQMKNYSQDFHPSIVYLTGTREQVATASKAYRVYFSKANENENDEEDYLVDHSIVLYLVSPSGEFLDFFTQSMEVKDIVDKIAHYKEVYEQNLKDIES 218
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Match: Uncharacterized (protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF8_9STRA) HSP 1 Score: 219 bits (557), Expect = 2.750e-64 Identity = 107/201 (53.23%), Postives = 142/201 (70.65%), Query Frame = 1
Query: 454 GPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGK-PVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGED-YLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVGR 1050
GP++W + L G+V V YY + + Q +T S+VTS GKP LGGP+TLVD K PVT+ + G + LLYFGF HCPDICP+ELV++G + KLE + VV P+FVSVDP RD++AQ++ Y DFH + LTGT+DQVA KAYRVYFSK +E+E+ +D YL+DHSIV+YL+ P+G+FLDFFTQ + D +
Sbjct: 36 GPVSWSGLALAGVVGGSVVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTKRPVTDASFRGQYSLLYFGFTHCPDICPNELVRIGDVLDKLESENLPEVV-PLFVSVDPKRDTIAQMQAYKADFHPKFKMLTGTRDQVADITKAYRVYFSKADENEDDDDDYLVDHSIVMYLVGPDGEFLDFFTQNARVEDIAAK 235 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11.868.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11.868.1 >prot_Ecto-sp9_F_contig11.868.1 ID=prot_Ecto-sp9_F_contig11.868.1|Name=mRNA_Ecto-sp9_F_contig11.868.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=351bp MATRLACAAASRARSSALRAGIVLKPPRCRADPSRGTAAALISSSSCSRTback to top mRNA from alignment at Ecto-sp9_F_contig11:41655..45320+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11.868.1 ID=mRNA_Ecto-sp9_F_contig11.868.1|Name=mRNA_Ecto-sp9_F_contig11.868.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3666bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11:41655..45320+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11:41655..45320+ >mRNA_Ecto-sp9_F_contig11.868.1 ID=mRNA_Ecto-sp9_F_contig11.868.1|Name=mRNA_Ecto-sp9_F_contig11.868.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2106bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11:41655..45320+ (Ectocarpus species9 EcSCA_722f female)back to top |