mRNA_Ecto-sp9_F_contig11.867.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11.867.1
Unique NamemRNA_Ecto-sp9_F_contig11.867.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Match: Phosphoglycerate (mutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM7_ECTSI)

HSP 1 Score: 532 bits (1371), Expect = 1.750e-185
Identity = 257/261 (98.47%), Postives = 259/261 (99.23%), Query Frame = 2 
Query:  257 TSHRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLRSPLPDTLLSAELLSVDGAPARMAAADGEVNAF 1039
            TSHRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPE EEAFGKENVALWAS+YDVAPHPMSTDGLYYPKDDRRY+HVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIV MKVPRATPIVYDLGADMKPLRSPLPDTLLSAELLSVDGAPARMAAADGEVNAF
Sbjct:   20 TSHRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPEAEEAFGKENVALWASSYDVAPHPMSTDGLYYPKDDRRYQHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVTMKVPRATPIVYDLGADMKPLRSPLPDTLLSAELLSVDGAPARMAAADGEVNAF 280
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Match: 2,3-diphosphoglycerate-dependent (phosphoglycerate mutase n=1 Tax=Derxia lacustris TaxID=764842 RepID=UPI000A17839F)

HSP 1 Score: 248 bits (633), Expect = 8.070e-75
Identity = 114/227 (50.22%), Postives = 158/227 (69.60%), Query Frame = 2 
Query:  263 HRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLR 943
            H++V +RHGES WN D+R  GWTDV +TE G  EA  AG+ L++EG+ FD+ F SVLKR ++T + V+DELDQLW+P  K +RLNERHYG   G  K ET   +G E V +W   Y +AP+P++ D   +P+ D RY    D D A  +P TEC+KD   RV+ YW+E IAP ++SGK+V++A H N L+ L+++LDGI DD IV++ +P A P+VY+L  D+KP+R
Sbjct:    2 HKLVLIRHGESQWNLDNRFTGWTDVDITENGAREAKAAGQLLKQEGYSFDIAFTSVLKRAIRTLNTVLDELDQLWIPVEKHWRLNERHYGALQGLNKSETAAKYGDEQVLVWRRAYAIAPNPLALDDERHPRFDARY---ADLDPAL-LPATECLKDTVARVLPYWDETIAPTLKSGKKVIIAAHGNSLRALIKYLDGISDDDIVSLNIPTARPLVYELDDDLKPIR 224
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Match: 2,3-bisphosphoglycerate-dependent (phosphoglycerate mutase n=1 Tax=uncultured bacterium TaxID=77133 RepID=K1Y1M5_9BACT)

HSP 1 Score: 245 bits (626), Expect = 8.220e-74
Identity = 108/228 (47.37%), Postives = 158/228 (69.30%), Query Frame = 2 
Query:  263 HRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLRS 946
            ++VV LRHGESTWN+++R  GWTDV L+E G  EA  AG  L+KEG+ FDV + SVLKR ++T  + +D +D +W+P  +++RLNERHYG   G  K ET   FG++ V +W  +YD+ P+P++TD   YP  D RY  + ++     +P+TEC+KD   R + YWE+ IAP V+SGK+VL+A H N L+ L+++LD I DD IV + +P A P+VY+L  ++KP++S
Sbjct:    2 YKVVLLRHGESTWNKENRFTGWTDVDLSETGIKEATNAGLTLKKEGYTFDVAYTSVLKRAIRTLWLTLDTMDLMWIPVYRNWRLNERHYGALQGMNKSETAAKFGEDQVLVWRRSYDIPPNPLTTDDPRYPGKDPRYSDLTEK----TLPKTECLKDTVARFIPYWEDTIAPAVKSGKKVLIAAHGNSLRALVKYLDNISDDEIVKLNIPTAVPLVYELDKNLKPIKS 225
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Match: 2,3-diphosphoglycerate-dependent (phosphoglycerate mutase n=1 Tax=Massilia niastensis TaxID=544911 RepID=UPI0003684418)

HSP 1 Score: 244 bits (624), Expect = 1.630e-73
Identity = 110/227 (48.46%), Postives = 152/227 (66.96%), Query Frame = 2 
Query:  263 HRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLR 943
            H++VF+RHGESTWN ++R  GWTDV LTEKGEHEA  AG  L++ GF FD+ + SVLKR ++T  + +DE+D +WVP   D+RLNERHYG   G  K ET   +G   V  W  +YD  P P+++D L     D RY HV       +IP TEC+KD   RV+  W EEIAP +R+GK+VL++ H N L+ L++ LDG+ D+ IV + +P   P+VY+L A+++P+R
Sbjct:    2 HKIVFMRHGESTWNLENRFTGWTDVDLTEKGEHEARSAGAMLKEAGFSFDLAYTSVLKRAIRTLWLTLDEMDMMWVPVKNDWRLNERHYGALSGLNKAETAARYGDAQVLEWRRSYDTPPPPLASDALGKLSSDPRYAHVP----RTSIPHTECLKDTLARVMPAWNEEIAPEIRAGKKVLISAHGNSLRALIKMLDGLSDEAIVGLNIPNGQPLVYELDAELRPIR 224
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Match: 2,3-bisphosphoglycerate-dependent (phosphoglycerate mutase n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A521ZBQ9_9BURK)

HSP 1 Score: 244 bits (623), Expect = 2.290e-73
Identity = 110/227 (48.46%), Postives = 156/227 (68.72%), Query Frame = 2 
Query:  266 RVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLRS 946
            ++V LRHGES WN D+R  GWTDV +TE G  EA  AG  LR EGF FDV + SVLKR ++T + V+D +D +W+P +KD+ LNERHYG   G  K ET   +G+E V +W   Y +AP+P+S D   +P+ D RY+++   D    +P TEC+KD   RVV YWE+EIAP +R+GK+V++A H N L+ L+++LD I DD IV + +P A P+VY+L  ++KP+++
Sbjct:    3 KLVLLRHGESQWNLDNRFTGWTDVDITENGWREACTAGDLLRDEGFTFDVAYTSVLKRAIRTLYTVLDRMDAMWIPVVKDWHLNERHYGALQGMDKAETATKYGEEQVLVWRRAYAIAPNPLSLDDKRHPRFDARYKNLKPSD----LPATECLKDTVDRVVPYWEKEIAPQLRAGKKVIIAAHGNSLRGLVKYLDNISDDAIVKLNIPTARPLVYELDDNLKPIKN 225
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Match: 2,3-bisphosphoglycerate-dependent (phosphoglycerate mutase n=1 Tax=Verrucomicrobia bacterium RIFCSPHIGHO2_12_FULL_41_10 TaxID=1802433 RepID=A0A1G3ZHV3_9BACT)

HSP 1 Score: 243 bits (620), Expect = 6.350e-73
Identity = 110/227 (48.46%), Postives = 154/227 (67.84%), Query Frame = 2 
Query:  263 HRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLR 943
            +++V +RHGES WN+++R  GWTDV L+EKG  EA  AG  L++EGF FD+ F S+LKR LKT  IV+DELD+LW+P  + +RLNERHYG   G  K ET   +G E + +W  +YDV P P+ T    +P +D RY  V  E+    +P TEC+KD   RV+ YWEE+IAPVVR GK+V++  H N ++ L++HLD + ++ I+   +P   P+VY+L  D+KPLR
Sbjct:    2 YQLVLIRHGESVWNQENRFTGWTDVDLSEKGVIEAKAAGELLKREGFSFDIAFVSLLKRALKTLWIVLDELDELWIPMERSWRLNERHYGALQGLNKSETAAKYGDEKILIWRRSYDVPPPPLETSDERFPGNDPRYADVPKEE----LPLTECLKDTIERVIPYWEEKIAPVVRQGKKVVIMAHGNTIRALMKHLDQLSEEEILHTNIPTGIPLVYELDQDLKPLR 224
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Match: 2,3-bisphosphoglycerate-dependent (phosphoglycerate mutase n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A1C7HIQ3_9BURK)

HSP 1 Score: 243 bits (620), Expect = 6.560e-73
Identity = 113/228 (49.56%), Postives = 153/228 (67.11%), Query Frame = 2 
Query:  263 HRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLRS 946
            +++V +RHGES WN ++R  GW DV LTEKG  EA LAG+ L+K+GF FD+ + SVLKR ++T  I +DELDQL++P IKD+RLNERHYG   G  K ET E FG E V +W  +YDV P  +S +   +P +  RY     E     +P TEC+KD  +RVV YWE EI P +R GK++L+  H N L+ L++HLD I D  IV + +P  TP+VY+L  +MKP++S
Sbjct:    2 YKIVLMRHGESQWNLENRFTGWVDVDLTEKGRKEAALAGQLLKKQGFVFDLCYTSVLKRAIRTLCIALDELDQLYLPVIKDWRLNERHYGALQGLNKKETAEKFGNEQVMIWRRSYDVPPPALSKESPMWPANQSRYRLEDPE----LMPLTECLKDTVKRVVPYWENEIVPKIREGKQILITAHGNSLRALIKHLDNISDADIVGLNIPTGTPLVYELDENMKPIKS 225
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Match: 2,3-bisphosphoglycerate-dependent (phosphoglycerate mutase n=1 Tax=Sutterella sp. TaxID=1981025 RepID=A0A350LK84_9BURK)

HSP 1 Score: 241 bits (616), Expect = 2.480e-72
Identity = 113/225 (50.22%), Postives = 154/225 (68.44%), Query Frame = 2 
Query:  269 VVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLR 943
            VVF+RHGES WN ++R  GWTDV LTEKG+ EA  AG  +R+ G EFD+ F SVLKR ++T +I +DE D+L++P IKD+RLNERHYG   G  K ET + FG+E V +W  +YDV P  ++ D   YP +D RY   +DE     +P TEC+KD   RV+ YW+E I P V+SG RVLVA H N L+ L++H+DG+ D+ IV + +P   P+VY+   +M+P+R
Sbjct:    4 VVFMRHGESQWNLENRFTGWTDVDLTEKGQAEARKAGALIREAGLEFDIAFTSVLKRAIRTLYIALDETDRLYLPVIKDWRLNERHYGALQGLNKAETAKKFGEEQVHVWRRSYDVPPPALTKDDPRYPGNDPRYA-FLDE---AQLPLTECLKDTVDRVIPYWKETIEPAVKSGMRVLVAAHGNSLRALIKHIDGMTDEAIVGLNIPTGRPLVYEFDDEMRPIR 224
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Match: 2,3-bisphosphoglycerate-dependent (phosphoglycerate mutase n=1 Tax=Candidatus Desantisbacteria bacterium CG1_02_38_46 TaxID=1817893 RepID=A0A1J4SB84_9BACT)

HSP 1 Score: 241 bits (615), Expect = 3.490e-72
Identity = 112/227 (49.34%), Postives = 154/227 (67.84%), Query Frame = 2 
Query:  266 RVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLRS 946
            ++V LRHGES WN+++R  GWTDV L+EKG  EA  AG  L+ EGF FDV F SVLKR ++T  IV+DE+D +W+P    +RLNERHYG   G  K E  E FG+E V +W  +YD+ P  +      YP +D RY+ + DE G   IP TEC+KD   R + YW E IAPVV+SGK+V++A H N L+ L+++LD +PDD IV++ +P   P+VY+L  D+KP+++
Sbjct:    3 KLVLLRHGESEWNKENRFTGWTDVDLSEKGIQEAKKAGDVLKSEGFIFDVAFTSVLKRAIRTLWIVLDEMDLMWIPVYNSWRLNERHYGALQGLNKSEMAEKFGEEQVLIWRRSYDIQPPALEKTDERYPGNDPRYKDL-DEKG---IPLTECLKDTVARFLPYWHENIAPVVKSGKKVIIAAHGNSLRALVKYLDNVPDDKIVSLNIPTGIPLVYELDEDLKPIKN 225
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Match: 2,3-bisphosphoglycerate-dependent (phosphoglycerate mutase n=5 Tax=Burkholderiales TaxID=80840 RepID=A0A554WS00_9BURK)

HSP 1 Score: 241 bits (615), Expect = 5.840e-72
Identity = 117/252 (46.43%), Postives = 161/252 (63.89%), Query Frame = 2 
Query:  263 HRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAGRALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANMLKTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLRSPLPDTLLSAELLSVDGAPARMAAA 1018
            H++V +RHGESTWN ++R  GWTDV LT  G  +A+ AGR LR+EG++FD+ F SVLKR + T   V+DE+D+ W+P +KD+RLNERHYG   G  K +    +G++ V LW  +YDV P  +  D     + DRRY H+  E     IP TEC+KD   RVV YW+E IAP +R+G+RVL+A H N ++ L++HLDGI D  IV + +P   P+VY+   D++PLR        +AE  +   A AR  AA
Sbjct:   18 HKLVLIRHGESTWNLENRFTGWTDVDLTPTGIAQAIAAGRLLREEGWDFDLCFTSVLKRAIHTLWYVLDEMDRTWLPVVKDWRLNERHYGALQGLNKADMARQYGEQQVLLWRRSYDVPPPALQPDDPRGQRHDRRYAHLRPEQ----IPLTECLKDTVARVVPYWDEAIAPAIRAGRRVLIAAHGNSIRALIKHLDGISDADIVGLNIPNGVPLVYEFDDDLRPLRRYYLGDAAAAEAAAA--AVARQGAA 263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11.867.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Phosphoglycerate1.750e-18598.47mutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM7_... [more]
2,3-diphosphoglycerate-dependent8.070e-7550.22phosphoglycerate mutase n=1 Tax=Derxia lacustris T... [more]
2,3-bisphosphoglycerate-dependent8.220e-7447.37phosphoglycerate mutase n=1 Tax=uncultured bacteri... [more]
2,3-diphosphoglycerate-dependent1.630e-7348.46phosphoglycerate mutase n=1 Tax=Massilia niastensi... [more]
2,3-bisphosphoglycerate-dependent2.290e-7348.46phosphoglycerate mutase n=1 Tax=Burkholderiaceae b... [more]
2,3-bisphosphoglycerate-dependent6.350e-7348.46phosphoglycerate mutase n=1 Tax=Verrucomicrobia ba... [more]
2,3-bisphosphoglycerate-dependent6.560e-7349.56phosphoglycerate mutase n=2 Tax=Burkholderiales Ta... [more]
2,3-bisphosphoglycerate-dependent2.480e-7250.22phosphoglycerate mutase n=1 Tax=Sutterella sp. Tax... [more]
2,3-bisphosphoglycerate-dependent3.490e-7249.34phosphoglycerate mutase n=1 Tax=Candidatus Desanti... [more]
2,3-bisphosphoglycerate-dependent5.840e-7246.43phosphoglycerate mutase n=5 Tax=Burkholderiales Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11contigEcto-sp9_F_contig11:36532..41346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score535.8
Seed ortholog evalue1.4e-149
Seed eggNOG ortholog2880.D7FIM7
KEGG rclassRC00536
KEGG koko:K01834
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230
KEGG ModuleM00001,M00002,M00003
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC5.4.2.11
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionHistidine phosphatase superfamily, clade-1
Ec32 orthologEc-27_000330.1
Exons6
Model size1803
Cds size963
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11.867.1prot_Ecto-sp9_F_contig11.867.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11 36611..40585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928332.655275-UTR-Ecto-sp9_F_contig11:36531..366101622928332.655275-UTR-Ecto-sp9_F_contig11:36531..36610Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11 36532..36610 +
1692277836.500133-UTR-Ecto-sp9_F_contig11:36531..366101692277836.500133-UTR-Ecto-sp9_F_contig11:36531..36610Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11 36532..36610 +
1622928332.7426856-UTR-Ecto-sp9_F_contig11:40585..413461622928332.7426856-UTR-Ecto-sp9_F_contig11:40585..41346Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11 40586..41346 +
1692277836.5589833-UTR-Ecto-sp9_F_contig11:40585..413461692277836.5589833-UTR-Ecto-sp9_F_contig11:40585..41346Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11 40586..41346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928332.6731095-CDS-Ecto-sp9_F_contig11:36610..368631622928332.6731095-CDS-Ecto-sp9_F_contig11:36610..36863Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 36611..36863 +
1692277836.5115383-CDS-Ecto-sp9_F_contig11:36610..368631692277836.5115383-CDS-Ecto-sp9_F_contig11:36610..36863Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 36611..36863 +
1622928332.6861918-CDS-Ecto-sp9_F_contig11:37321..374271622928332.6861918-CDS-Ecto-sp9_F_contig11:37321..37427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 37322..37427 +
1692277836.5206351-CDS-Ecto-sp9_F_contig11:37321..374271692277836.5206351-CDS-Ecto-sp9_F_contig11:37321..37427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 37322..37427 +
1622928332.6975229-CDS-Ecto-sp9_F_contig11:38045..381491622928332.6975229-CDS-Ecto-sp9_F_contig11:38045..38149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 38046..38149 +
1692277836.5290086-CDS-Ecto-sp9_F_contig11:38045..381491692277836.5290086-CDS-Ecto-sp9_F_contig11:38045..38149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 38046..38149 +
1622928332.7100537-CDS-Ecto-sp9_F_contig11:38946..390731622928332.7100537-CDS-Ecto-sp9_F_contig11:38946..39073Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 38947..39073 +
1692277836.536744-CDS-Ecto-sp9_F_contig11:38946..390731692277836.536744-CDS-Ecto-sp9_F_contig11:38946..39073Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 38947..39073 +
1622928332.720151-CDS-Ecto-sp9_F_contig11:39873..400151622928332.720151-CDS-Ecto-sp9_F_contig11:39873..40015Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 39874..40015 +
1692277836.5444846-CDS-Ecto-sp9_F_contig11:39873..400151692277836.5444846-CDS-Ecto-sp9_F_contig11:39873..40015Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 39874..40015 +
1622928332.7303035-CDS-Ecto-sp9_F_contig11:40354..405851622928332.7303035-CDS-Ecto-sp9_F_contig11:40354..40585Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 40355..40585 +
1692277836.551824-CDS-Ecto-sp9_F_contig11:40354..405851692277836.551824-CDS-Ecto-sp9_F_contig11:40354..40585Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11 40355..40585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11.867.1

>prot_Ecto-sp9_F_contig11.867.1 ID=prot_Ecto-sp9_F_contig11.867.1|Name=mRNA_Ecto-sp9_F_contig11.867.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=321bp
MCSVSCALTLGWTTTIALIGADAFVPPTLLQQRTPATTSRMVTTTDRDHH
HLPAPEETTTSHRVVFLRHGESTWNRDDRHIGWTDVPLTEKGEHEALLAG
RALRKEGFEFDVVFASVLKRVLKTEHIVMDELDQLWVPEIKDYRLNERHY
GDCIGKTKPETEEAFGKENVALWASTYDVAPHPMSTDGLYYPKDDRRYEH
VVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVAGHANML
KTLLQHLDGIPDDVIVAMKVPRATPIVYDLGADMKPLRSPLPDTLLSAEL
LSVDGAPARMAAADGEVNAF*
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mRNA from alignment at Ecto-sp9_F_contig11:36532..41346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11.867.1 ID=mRNA_Ecto-sp9_F_contig11.867.1|Name=mRNA_Ecto-sp9_F_contig11.867.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4815bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11:36532..41346+ (Ectocarpus species9 EcSCA_722f female)
CGTTCTTCAAGCCACGTTGGCGTCTCGGCGTCTCTGCCCTCTGCTGGCGC
TACCCTTCGTGTGTGTAGGTGTTTCCGGGATGTGCTCAGTATCATGTGCT
CTCACACTGGGCTGGACAACCACCATTGCACTGATTGGTGCGGATGCCTT
TGTGCCGCCAACCCTGCTGCAGCAGCGAACCCCGGCTACTACAAGTAGGA
TGGTGACCACAACGGACCGAGATCATCATCACTTGCCGGCGCCGGAAGAG
ACCACCACGTCTCACCGCGTGGTGTTCCTTAGGCATGGAGAGTCGACTTG
GAATAGAGACGATCGACACATAGGTTGGACAGGTAAGGTTTGGCGATGCT
GTGACGACATGAACCGACCGCTTACACAGCATGTAGCGACATAAGCTTTG
GCGCAGACCGTTCTTCGGATGAATGCTGTCTCGAAGGTGCTGGGCGATGT
CCGCACTCCTCTGTTCATCATCAGTGGTGCCGTCGAAGTCATTCCAGCAC
TCCAGCGTATGATGCTTGTAGGATGTTATCTCATGAACAATGGAACTGCT
GCCTCTCTCACTTTGCAGACTGCGGACACAGGCTCAGCTACACACCGACA
CAATATTGTAGGTATACGGTCTTCCAGCACAGCTACTTGACACAGTAAGT
ACGGTCTCACGCTTTCAACACAGCACCTAAACGATCTATGTGCGAAGTCT
ACTTCAGCGGTCATTCCTCATAGCTTACATCGATTTTCCACCTGTGTACG
GAATGCACGTTCACTGCTCCGCACATGGTATGTACGTCAGACGTCCCGCT
CACCGAAAAGGGCGAACACGAAGCTCTGCTGGCCGGGCGAGCTTTGCGGA
AGGAAGGCTTTGAGTTCGACGTGGTGTTTGCATCGGTGCTCAAGCGGTGA
GCAGCCGACCCCTTGGCGGTACCTGTTCTTGCTGTCCGTCGAAACCCGCC
CTTATTCCAAACACCAGCGTAAACTTTATGCGCACGGAAAATTACACACG
CAGTTTATGGGTATCCTCTCCATGCTTGGTTTTTTGGCACCGGTTCCTCG
GACATACTTCGCTCTCGCGGTGGGCCACGCCCATCGCATGCAACACACGA
CCCCCATGGCACTTCTTGTTCTCATTCCAGACAGCGGCCGTGCACATGTT
TCGATACTCGACGTTCCCTCATTGGAAGGCCTACCCGAGTGCACTGCTGC
GGTGTTCTTAGACTTGTCAAGCACACCGACCGACTGATGTTGTGCATGTC
GACTACATAGGCGCAAGTGCCTGCTCCCGAACGGCGATGCCACTGGCTTG
TTTGTTGCACAGACTGCTGCTATGTTCGTCACCTGCGGACTTTTCAGTGC
GAAGCTGCCGCTGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGT
TTTTGTTGTTGCTGCCGCTGCTGCTGCCGCTGCTGCTTCCGCACGGCGTA
ATGAATGATAAACTGCCAAGTGACACCGAGACGTCCTCCTTCGTTCGCCG
TTTCGAAAGACTAGGGTGCTCAAAACGGAGCACATCGTGATGGACGAACT
CGACCAGCTTTGGGTGCCGGAGATCAAGGACTACCGACTCAACGAGCGCC
ACTACGGGGACTGCATAGGTGAAGCACAGTTAGCGGTACCTACGCACGTC
CAGGCCCAACCCTATCCTAAGCCAGCTCCCTGCCATGTGGTTGTAGGCCC
AACAAGGGAAGTGCCTCCGTGTTTCGCTGTGCGTACCGAGGCAAGTTGAA
GGAACACCTCTGCGAGAGAGTCCATGCGTGAAAAAGACACGATAGGTGGG
GTTGCCGACGTGCTCTTCTCATGGTGGAGTGCATCCACATGTGTTGCTAG
TACGAGGTCTATTCCCGTTCCCGATCTGAGCATCCTCGCTCAACTACAGT
ATGTTTTATCCCCACCCAAGTTCATTGCTCTTCGACGTTTTCCCTCCGAA
ACATGAGAAGAGTAGACTCAATTATATGCGTCATGCCATGCGTTATTTCC
GATCATGCAGCGTTGCCCCGATCTTCCAAATACTTGTTGGTGGCTTGACG
TCGAAGCGTTAATGGTTGTAGTTTCAACTGCAGAAGGCACAAGCAGTCGC
ACCGCTGGGTGGACAATCTCTCACGTGGTGGCACATTGACGCAGATTCTT
GCCAAGAAAGCTGACGGCATCGCGTAAATCAGTGTCTGTGACCCTGTACC
ACGAACTCTGACTAATTGGGATTACTCAACTCCCAAGACGACGACAGCAG
TTTAATTCTACCAACCAGTCATGTCGACTAACGGGGCGATAGCAGAAAAC
ACGGGGTAGGCAGTAACTGATACCGTCCCCCACGCAAGACTTTTTCAGTT
ATTCGGTACTTAAATGCCAAGACGCATGACTCCTTGACGATATGTACGTT
GCGTGGACGCAACAGGTAAGACAAAGCCGGAGACGGAGGAGGCTTTTGGT
AAGGAGAATGTGGCGCTCTGGGCGTCGACCTATGACGTTGCCCCGCATCC
GATGAGCACGGACGGGCTTTACTACCCCAAGGACGACCGACGGTGTGTGG
CTGTGCGAGGCGTTTCTCCTTAATAGGGGTGATTATGTACAGAAGCTACA
GTAGTTGCCTTTACAAATTGCCAAATCCGTAGACCATAGAGCCTCGACCT
CGATTTGCGGCCCAGGAAGTAGACTTGGAAACTTGGAAATTTGGAAGCGA
CTGACACCGAATTTGGAACGAGTTGATGAATAAAAATGAAAACATTGGAA
GTCTGAATAGTCGAACTGGAAAAATTGGAAGCAAAATAGTTGCTGCATAG
CGCCCCTTTCCACAACGTAGACCGCGCGCTATGTGCCAGGTTCTGAGGGT
AGCACGTTGCGTGTGTGTGCGTGTTTTCTTTGTATCGGGTCGACTGCGGT
ACTGGTCAATGGACGTCGATCTTGTAGCGGGACAAGAAACGGGACCTCGC
TTTCTTGCCAGCGGAGTCCCCGGACAGGAGGGCAGCAGAAGAGATTGCAC
GACAGCGTCCATTATCCGTATTCAGAGTATTCGCAGTGTCTATGGCGTAT
ACTCCTGTGCTAGCGTCATTGCTTTGCAATTGGTTGCCCTCTCCCCACTG
CGTTGGGTTCGTCGCTACTGTAGCTTCAGCATACCTCTCGCCCGTGCGAT
TTTCTTCCGTCAAAGTAGTGTGCGTACCACTTGCAGCGGTACAACAGCGC
AGTCTGTGCAGCACATGTCCTTGCTCCCGTGGCGAGCTTTCTTAGAGTCC
CTTCTTTGTCGCCCCGTTTTTTCTTTTGAACTCCTCCCTTTGGCCGTTCC
GCACCCTTTCCCGCCTCACTGGTCTGCGTGTGGTATTTGAAGGTACGAAC
ACGTCGTCGACGAAGATGGAGCCTGCGCGATACCCCGGACGGAGTGCATG
AAGGATGTGTCCCGCCGCGTGGTGGGGTACTGGGAGGAGGAGATAGCGCC
GGTCGTGAGGAGCGGGAAGCGCGTGCTAGTAGCGGTGAGCCAAGCTACAC
TCCTACAGCCATCAGTCTGTTCTTGCCCGACGTACTTTGATGAAAATGGC
GATGGCTCGTTCTTTTTTTTGTCGGCACGTGACGTGCTCGAGGAATCATA
CAAATTGACACAAATCCACACCGGCTGTGTATAATTTTGTGCCGGTACGT
TTACTGACATGCATCTGTTCCTACCGGATAGTGTCTCTGCTGTGCCTGGC
TCATAGGTATCAATCGAGGGGTTCACCCGAATAAGCTTGGCCGAAATCCC
CTCTTTTGCTCCCCCCCGTCAGTTTCCGTGACCCCCCCCCCCCCTCTGCA
TTTGTTTCCCCTCGGTCCGCCAGGGTCACGCAAATATGCTCAAGACTCTG
CTACAGCACCTCGACGGCATACCCGACGACGTGATTGTCGCGATGAAGGT
TCCTCGCGCAACCCCCATTGTCTACGACCTGGGCGCAGATATGAAACCGT
TACGATCACCACTACCCGACACGCTGTTGAGCGCCGAGCTCCTGTCGGTT
GACGGTGCCCCCGCCCGCATGGCGGCCGCGGACGGAGAAGTGAACGCGTT
TTAGAGCGGGTATGGCTGTTGTTCCGTGTGGGGTGTCCCCCGGAAGCATT
TTGGCAGTTTAGCCCCGAGGGTTGTTTTCCGCCCGTCATGGGAACGGCAC
AATATACCCGTTAGATAGCGCTAGCGATACGAACCGTTGATGAGTTGTGT
TGAGTGTTGAGCGAGGCACCTATGGCAGTGCGTGGCGCCCTCCAGTCCTG
TGTCGGCTGGAACTGTCCTGTAAAAATGGTCCTCTGTCTTGCGAGTATTT
GGTAAGTTATATTAGTCGTGCAGGCACAGACGGTTTGTTCGTCGCGTATC
AGGCGGAAGCTGGTGGCTTAGAAGAGGCTAGAATGCCGTGCCCCAGCGCA
GCAAGTGGTGGTGTTGTGCGAACTGGCAGACTGGGGGGGGGTTGGATTTC
CAGCAGTATCTTCTTTTGCGTGTAACTACTGTGTCGCATGTACGCCGTGT
ACATGGTGCGTTGCTCTTTCTATTGCCCTCTTTTTGTAGCCGGCTACTTG
TACCTTTGGATGCAAACTGGCCAATTCGGAATTGAGCGAAGTATCAATCT
GTACTGCTGAGTGTGATCGAATTGTCAATAGGATTGTCAATGAACGATTG
GTGTTGAGAAGGACACCCTAATGTAGAATGTAAAAGAAAGTATGTTAGAG
CGGGGAAAAAAAGAAGAAGACAAACTCACACGGGTTGATGTGACGATACG
ACGACACGGACACGGTATCTTGTGTGATCATGTGTCGTGCGCGCACATTC
ACAAACAAACATGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11:36532..41346+

>mRNA_Ecto-sp9_F_contig11.867.1 ID=mRNA_Ecto-sp9_F_contig11.867.1|Name=mRNA_Ecto-sp9_F_contig11.867.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1926bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11:36532..41346+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCTCAGTATCATGTGCTCTCACACTGGGCTGGACAACCACCATTGC
ACTGATTGGTGCGGATGCCTTTGTGCCGCCAACCCTGCTGCAGCAGCGAA
CCCCGGCTACTACAAGTAGGATGGTGACCACAACGGACCGAGATCATCAT
CACTTGCCGGCGCCGGAAGAGACCACCACGTCTCACCGCGTGGTGTTCCT
TAGGCATGGAGAGTCGACTTGGAATAGAGACGATCGACACATAGGTTGGA
CAGATGTGCTCAGTATCATGTGCTCTCACACTGGGCTGGACAACCACCAT
TGCACTGATTGGTGCGGATGCCTTTGTGCCGCCAACCCTGCTGCAGCAGC
GAACCCCGGCTACTACAAGTAGGATGGTGACCACAACGGACCGAGATCAT
CATCACTTGCCGGCGCCGGAAGAGACCACCACGTCTCACCGCGTGGTGTT
CCTTAGGCATGGAGAGTCGACTTGGAATAGAGACGATCGACACATAGGTT
GGACAGACGTCCCGCTCACCGAAAAGGGCGAACACGAAGCTCTGCTGGCC
GGGCGAGCTTTGCGGAAGGAAGGCTTTGAGTTCGACGTGGTGTTTGCATC
GGTGCTCAAGCGACGTCCCGCTCACCGAAAAGGGCGAACACGAAGCTCTG
CTGGCCGGGCGAGCTTTGCGGAAGGAAGGCTTTGAGTTCGACGTGGTGTT
TGCATCGGTGCTCAAGCGGGTGCTCAAAACGGAGCACATCGTGATGGACG
AACTCGACCAGCTTTGGGTGCCGGAGATCAAGGACTACCGACTCAACGAG
CGCCACTACGGGGACTGCATAGGGTGCTCAAAACGGAGCACATCGTGATG
GACGAACTCGACCAGCTTTGGGTGCCGGAGATCAAGGACTACCGACTCAA
CGAGCGCCACTACGGGGACTGCATAGGTAAGACAAAGCCGGAGACGGAGG
AGGCTTTTGGTAAGGAGAATGTGGCGCTCTGGGCGTCGACCTATGACGTT
GCCCCGCATCCGATGAGCACGGACGGGCTTTACTACCCCAAGGACGACCG
ACGGTAAGACAAAGCCGGAGACGGAGGAGGCTTTTGGTAAGGAGAATGTG
GCGCTCTGGGCGTCGACCTATGACGTTGCCCCGCATCCGATGAGCACGGA
CGGGCTTTACTACCCCAAGGACGACCGACGGTACGAACACGTCGTCGACG
AAGATGGAGCCTGCGCGATACCCCGGACGGAGTGCATGAAGGATGTGTCC
CGCCGCGTGGTGGGGTACTGGGAGGAGGAGATAGCGCCGGTCGTGAGGAG
CGGGAAGCGCGTGCTAGTAGCGGTACGAACACGTCGTCGACGAAGATGGA
GCCTGCGCGATACCCCGGACGGAGTGCATGAAGGATGTGTCCCGCCGCGT
GGTGGGGTACTGGGAGGAGGAGATAGCGCCGGTCGTGAGGAGCGGGAAGC
GCGTGCTAGTAGCGGGTCACGCAAATATGCTCAAGACTCTGCTACAGCAC
CTCGACGGCATACCCGACGACGTGATTGTCGCGATGAAGGTTCCTCGCGC
AACCCCCATTGTCTACGACCTGGGCGCAGATATGAAACCGTTACGATCAC
CACTACCCGACACGCTGTTGAGCGCCGAGCTCCTGTCGGTTGACGGTGCC
CCCGCCCGCATGGCGGCCGCGGACGGAGAAGTGAACGCGTTTTAGGGTCA
CGCAAATATGCTCAAGACTCTGCTACAGCACCTCGACGGCATACCCGACG
ACGTGATTGTCGCGATGAAGGTTCCTCGCGCAACCCCCATTGTCTACGAC
CTGGGCGCAGATATGAAACCGTTACGATCACCACTACCCGACACGCTGTT
GAGCGCCGAGCTCCTGTCGGTTGACGGTGCCCCCGCCCGCATGGCGGCCG
CGGACGGAGAAGTGAACGCGTTTTAG
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