mRNA_Ecto-sp9_F_contig1097.843.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1097.843.1
Unique NamemRNA_Ecto-sp9_F_contig1097.843.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 6.180e-10
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 QGKYTEAEPLYERAQAIFEKTLGSEHSDVATALNNRAALLSTQ 129
            QGKY EAEPLYER+QAI EK LG EH DVA++LNNR  LL  Q
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 7.220e-10
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 QGKYTEAEPLYERAQAIFEKTLGSEHSDVATALNNRAALLSTQGR 135
            QGKY EAEPLYER QAIFE  LG EH +VATALNNRA LL  Q R
Sbjct:   30 QGKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLLEDQRR 74
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BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Match: Integrase (catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 8.470e-10
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 QGKYTEAEPLYERAQAIFEKTLGSEHSDVATALNNRAALLSTQGRTLRRSLCL 159
            QGKYTEAEPLYER+QAI EK LGSEH  VAT+LN+RA LL  Q       LC+
Sbjct:   14 QGKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLLCKQEEADPEGLCI 66
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BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Match: Reverse (transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.060e-8
Identity = 54/172 (31.40%), Postives = 69/172 (40.12%), Query Frame = 1 
Query:    1 QGKYTEAEPLYERAQAIFEKTLGSEHSDVATALNNRAALLSTQGRTLRRSLCLNEPWSSERVF*ERTTRTR*RPGLGWRTCTRSRGCWTRLILCWRRSPVRWSVPLGLIIRTLLQRSTTWRRC*RDKASTLRPSHSMCGHKPFEKVLGPEHPDVASTLNDRASLLESHGKYA 516
            QGKY+EAEPLY+R QA+  K LG EH  +A  LNNRA LL  QG  + + L                                                 R   PL L         TT   C      T +    +   +  EK LGP+HPD+A+ LN+RA LL + G+ A
Sbjct:  186 QGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQGGVVEQLLA------------------------------------------------RCQSPLAL---------TTLLTC---LPFTSQDPLFLRAIEIGEKTLGPDHPDLATRLNNRAELLRAQGEGA 297
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY23_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.440e-8
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 QGKYTEAEPLYERAQAIFEKTLGSEHSDVATALNNR 108
            QG+YT+AEPLYE++QAI EK LG EHSDVAT+LNNR
Sbjct:   88 QGEYTQAEPLYEKSQAIQEKFLGQEHSDVATSLNNR 123
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.500e-8
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 QGKYTEAEPLYERAQAIFEKTLGSEHSDVATALNNRAALLSTQGRTLR 144
            QGKY EAEPLYER+QAI E  LG EH DV T+LNNRA LL  Q R  R
Sbjct:  660 QGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQVRHKR 707
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.640e-8
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 GKYTEAEPLYERAQAIFEKTLGSEHSDVATALNNRAALLSTQ 129
            GKYT+AEPLYER QAI+EK LG EH  VAT LNNRA LL  Q
Sbjct:  941 GKYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.500e-8
Identity = 61/181 (33.70%), Postives = 84/181 (46.41%), Query Frame = 1 
Query:    1 QGKYTEAEPLYERAQAIFEKTLGSEHSDVATALNNRAA---LLSTQGRTLRRSLCLN----------EPWSSERVF*ERTTRTR*RPGLGWRTCTRSRGCWTRLI-LCWRRSPVRWSVPLGLIIRTLLQRSTTWRRC*RDKASTLRPSHSMCGHKPFEKVLGPEHPDVASTLNDRASLLES 501
            QGKY EAEPLYER+QAI EK LG EH DVA +LNNR      L  +  T     CL+          EP     +  +        P +   T   +   W RL+ +C   S +++ + L  ++  +       +    D+A  L            EKV GP+HPDVA +LN+RA LL +
Sbjct:  291 QGKYAEAEPLYERSQAIREKMLGPEHPDVAQSLNNRVVEHLFLRIEVSTSFDLSCLSFMFQGKYDEAEPLYKRSLAIDEKVYGPDHPDVA--TALNN---WVRLLSIC--SSALKYLLALTTLLPVVPFLIFQGKY---DQAGPLYDRSLAI----LEKVHGPDHPDVAQSLNNRAELLRA 457
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.630e-8
Identity = 73/241 (30.29%), Postives = 93/241 (38.59%), Query Frame = 1 
Query:    1 QGKYTEAEPLYERAQAIFEKTLGSEHSDVATALNNRAALLSTQGRTLR-----------------RSLCLNEPWSSERV--F*ERTTRTR*RP-GLGWRTCTRSRGCWTRLILCWRRSPVRWSVPLGLIIRTLLQRSTTWRRC*RDKASTLRPSHSMCGHKPF---EKVLGPEHPDVASTLNDRASLLESH------------------------------GKYAEAGSLYERCQAINESS 564
            QG Y EA  LYER+ AI EK LG +H DVA +LNN A LL +Q R +R                 R+L L      +      ER+   R +  G       +S   W  L+     S VR     G  +   +       R    KA            +     EK LGP+HPDVA +LN+ A LLE+                               G Y EAG LYER  AI+E +
Sbjct:  283 QGNYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWALLLESQVRAIRIPGSFLWYPIHSGVLNNRALLLKAQGKYDEAGKLCERSLAIREKALGPDHPDVAQSLNNWALLL----ESQVRAIRIPGSFLWYPIHSGVLNNRALLLKAQGNYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWALLLEAQVRAIRIPGSFLWYPIDSEALNNRVLFLKAQGNYDEAGKLYERSLAISEKA 519
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BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Match: Tetratricopeptide (repeat-containing protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JJF2_9CYAN)

HSP 1 Score: 57.0 bits (136), Expect = 7.150e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QGKYTEAEPLYERAQAIFEKTLGSEHSDVATALNNRAALLSTQG 132
            QG Y++AEPLY+R+ AI+EK LGSEH +VAT+LNN A L   QG
Sbjct:    9 QGNYSQAEPLYQRSLAIWEKALGSEHPNVATSLNNLADLHWQQG 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1097.843.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.180e-1072.09protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.220e-1075.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Integrase8.470e-1066.04catalytic domain-containing protein (Fragment) n=1... [more]
Reverse1.060e-831.40transcriptase Ty1/copia-type domain-containing pro... [more]
Uncharacterized1.440e-877.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
NB-ARC1.500e-868.75domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.640e-873.81protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.500e-833.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.630e-830.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Tetratricopeptide7.150e-863.64repeat-containing protein (Fragment) n=1 Tax=Cyano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1097contigEcto-sp9_F_contig1097:6655..8912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size610
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1097.843.1prot_Ecto-sp9_F_contig1097.843.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1097 7457..8025 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928329.2130816-UTR-Ecto-sp9_F_contig1097:6654..67831622928329.2130816-UTR-Ecto-sp9_F_contig1097:6654..6783Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 6655..6783 +
1692277835.0811515-UTR-Ecto-sp9_F_contig1097:6654..67831692277835.0811515-UTR-Ecto-sp9_F_contig1097:6654..6783Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 6655..6783 +
1622928329.2230897-UTR-Ecto-sp9_F_contig1097:7355..74561622928329.2230897-UTR-Ecto-sp9_F_contig1097:7355..7456Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 7356..7456 +
1692277835.0943809-UTR-Ecto-sp9_F_contig1097:7355..74561692277835.0943809-UTR-Ecto-sp9_F_contig1097:7355..7456Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 7356..7456 +
1622928329.2540987-UTR-Ecto-sp9_F_contig1097:8025..80411622928329.2540987-UTR-Ecto-sp9_F_contig1097:8025..8041Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 8026..8041 +
1692277835.122564-UTR-Ecto-sp9_F_contig1097:8025..80411692277835.122564-UTR-Ecto-sp9_F_contig1097:8025..8041Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 8026..8041 +
1622928329.264485-UTR-Ecto-sp9_F_contig1097:8806..89121622928329.264485-UTR-Ecto-sp9_F_contig1097:8806..8912Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 8807..8912 +
1692277835.1305733-UTR-Ecto-sp9_F_contig1097:8806..89121692277835.1305733-UTR-Ecto-sp9_F_contig1097:8806..8912Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 8807..8912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928329.2321286-CDS-Ecto-sp9_F_contig1097:7456..76061622928329.2321286-CDS-Ecto-sp9_F_contig1097:7456..7606Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 7457..7606 +
1692277835.1038945-CDS-Ecto-sp9_F_contig1097:7456..76061692277835.1038945-CDS-Ecto-sp9_F_contig1097:7456..7606Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 7457..7606 +
1622928329.2439156-CDS-Ecto-sp9_F_contig1097:7917..80251622928329.2439156-CDS-Ecto-sp9_F_contig1097:7917..8025Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 7918..8025 +
1692277835.1118863-CDS-Ecto-sp9_F_contig1097:7917..80251692277835.1118863-CDS-Ecto-sp9_F_contig1097:7917..8025Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 7918..8025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1097.843.1

>prot_Ecto-sp9_F_contig1097.843.1 ID=prot_Ecto-sp9_F_contig1097.843.1|Name=mRNA_Ecto-sp9_F_contig1097.843.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=86bp
MADLYTKQGLLDKAYPLLEEVACSLERALGPYHPNLAAALNNLASLLKRQ
GKYAEAEPLYVRSQAIREGARSGASGCSLNAQRSG*
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mRNA from alignment at Ecto-sp9_F_contig1097:6655..8912+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1097.843.1 ID=mRNA_Ecto-sp9_F_contig1097.843.1|Name=mRNA_Ecto-sp9_F_contig1097.843.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2258bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:6655..8912+ (Ectocarpus species9 EcSCA_722f female)
CAGGGCAAGTACACTGAGGCCGAGCCTCTCTACGAGCGGGCACAGGCGAT
ATTCGAGAAGACCTTGGGTTCGGAGCATTCGGATGTGGCCACAGCACTCA
ACAACCGAGCGGCGTTGTTGAGCACACAGGTGCGGTGCGAACAATGCCTC
CAGATGCTTCCAGACGTTCTGCGATTTCCGAATACTTCCGGATCTTCTAG
ATGGTTACAGTAGTACTGGTAGTTCCGTCGCCAACATCGTTATTCGTGTG
TACTCGGCAGAATATGGATCTCCGAGGTCTCCGGGGGTTACGTGGATGTG
TTTCTTTATCGGTGTGATGGACTTGACGCGCGAGTTTACGCTTTGTCTCG
CCCCTGTCTCGTACTCTTTGAACTCTCTTTTAATACAAAGAACTCGAGTC
ACTCCTCTGTGCAGAAACGCTTTCGACAAGATCCCGCGAGTGATGCGGAG
GTACACGCACCGACGCCCCAAGCAATCATTCCACAAACCTGGCACTACAT
CCGCGAAAACAGATCACGGTGGGGATGCGGTAGTAATATTGCGAAGAAGC
AGGTCGGTGCTACCAGAGCACCGTAGAACACGTGACTTGCTTCAGTAGTG
TACATAGCCGTTCAGGGCAAGGCCCCCCTGAATTTTAAATTGTGATGCTT
GTTCAGTATTTGCTCCTCTGCGAATACATGCGTACTTTGATGTTGCTGCA
GGGACGTACGCTGAGGCGCAGCCTTTGTTTGAACGAGCCCTGGTCATCAG
AGAGGGTGTTCTAGGAGAGGACCACCCGAACGCGATAACGTCCCGGGCTT
GGATGGCGGACTTGTACACGAAGCAGGGGTTGCTGGACAAGGCTTATCCT
CTGTTGGAGGAGGTCGCCTGTTCGTTGGAGCGTGCCCTTGGGCCTTATCA
TCCGAACCTTGCTGCAGCGCTCAACAACCTGGCGTCGTTGTTGAAGAGAC
AAGTGAGAGCCAAAAGATGATTCTATTAATAATAGATACTTGTTGAAGAA
TTTTCCTCCAGTTCTAGATCCCATTTTGACTGACAGCCGACTCTCTGCCG
CGCTGCTCACCACATATGTTGGCAAGTGCGCCGAGACAAGCAACTCTAAC
TCTCATTCGCCATACAAGGGGAGGTTCTGGGCCTGGGGCACACGGATATG
GCACAGGCGCTCAACAACCCGAAGGGCGTTTTGGAGAAAGTTTGTACCCC
AGTTGTAATCCCACTTTGAATTATGAAAACATCTCTGCTGCGCTATGTAC
GACTGCATACCAGGGCAAGTACGCTGAGGCCGAGCCACTCTATGTGCGGT
CACAAGCCATTCGAGAAGGTGCTAGGTCCGGAGCATCCGGATGTAGCCTC
AACGCTCAACGATCGGGCTAGTTTGTTGGAGAGCCATGTGAGAACCAAAT
GAGCCTCTAGGTTCTTCTAGAGAAGAATAACTTCTCCGTAGTCGTTGATC
GCATTCTACCTGAAACCCGACTCTCTATCTCTCTGTCGCGTTGTTCCCCA
CTGGTTGGGAGTGGTCGGCAGATTACTAATATGATGGGCCTCCGGAAGGT
TACGTGTATTATTGTATGAGTATGATGGACATGACGCGCGGGGCCCCTCT
TGCCTCCCTCACGTCTCCCACTACATCATGACATACAAGGTCTTGCGTCG
ACAATCTCTCTCTTTCGGCCAAGTGTAGTTAGCGGTGTTCGGCACCTGAA
CTGTGTGAGTCGGGTCAATTGAGCGACGCACGCGATTTCCATAGCGAAGC
TGGGACGTCGCCATCTGAGACCGGGACAGTAGAGGTCATATATAGCTGAG
ACGGCGCTTCAGGACTGGGTCAGCATGTTAGGGGTGATTTTGTCAAGCAC
ATTTATTGCAGAGAAGCGGCGAAACAGGATGATGTGGCTTTGCTCGGACG
AGGAGGCTGCAGCTTTGGGCCCCCAGAATTTAAACAGGCGGCGGCAAAAC
AGAATGTCATGGCGCGCGTGCTAGACAGAATCACGCAATGAGCGCTCGTA
AACCATGCAAGGGAAGTTCTGTGGATGGAGAATTAGAATGTGGCCCAGGC
ACTCAACAACCCGGGGGGCGTGGTTGAGAATGTGTTTATCCGCAGTTGTG
GATCCCACCCGAAGGTAACGACTCCGCCACGCTGTGAACGGCGGCATGCC
AGGGCAAGTACGCCGAGGCTGGGTCTTTGTATGAGCGGTGTCAGGCGATA
AACGAGTCGTCCTTGGGTTCTGAGCATCCGAATGTGGCCACAGCGCTCAA
CAACCGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1097:6655..8912+

>mRNA_Ecto-sp9_F_contig1097.843.1 ID=mRNA_Ecto-sp9_F_contig1097.843.1|Name=mRNA_Ecto-sp9_F_contig1097.843.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:6655..8912+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGGACTTGTACACGAAGCAGGGGTTGCTGGACAAGGCTTATCCTCT
GTTGGAGGAGGTCGCCTGTTCGTTGGAGCGTGCCCTTGGGCCTTATCATC
CGAACCTTGCTGCAGCGCTCAACAACCTGGCGTCGTTGTTGAAGAGACAA
ATGGCGGACTTGTACACGAAGCAGGGGTTGCTGGACAAGGCTTATCCTCT
GTTGGAGGAGGTCGCCTGTTCGTTGGAGCGTGCCCTTGGGCCTTATCATC
CGAACCTTGCTGCAGCGCTCAACAACCTGGCGTCGTTGTTGAAGAGACAA
GGCAAGTACGCTGAGGCCGAGCCACTCTATGTGCGGTCACAAGCCATTCG
AGAAGGTGCTAGGTCCGGAGCATCCGGATGTAGCCTCAACGCTCAACGAT
CGGGCTAGGGCAAGTACGCTGAGGCCGAGCCACTCTATGTGCGGTCACAA
GCCATTCGAGAAGGTGCTAGGTCCGGAGCATCCGGATGTAGCCTCAACGC
TCAACGATCGGGCTAG
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