mRNA_Ecto-sp9_F_contig1097.842.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI) HSP 1 Score: 408 bits (1048), Expect = 4.710e-125 Identity = 215/281 (76.51%), Postives = 229/281 (81.49%), Query Frame = 2
Query: 167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAPVLGSVEEATVT*KRYVRTPC 1009
P P EAL WM VGVLD ASVGPL PVCQAFK L+EAAEGAA QDKLKGLISRCAFLTTVLIQHDR VGPLAQVQKPMKDFV TN LAAFAA WAKGGK RA FCHR+DR TLT FEEGLR IS+DIALVDGLEHH LLL V RQLRPPTLP+MA+VP+G I LTD ++SRPSLL A+ YLTNTA+G APCVLTGMAGAGKSVL SAVVRDEKVREHFHA FW RA RDAKDQLH LEG LRVAS+ GT +P LGSVEE T RY++ C
Sbjct: 56 PTPVQEALVWMARATVGVLDIASVGPLEPVCQAFKGLIEAAEGAAESQDKLKGLISRCAFLTTVLIQHDRAVGPLAQVQKPMKDFVATTNDLAAFAATWAKGGKCRALFCHRSDRSTLTDFEEGLRTISNDIALVDGLEHHQLLLAVYRQLRPPTLPAMASVPAGPISLTDGHISRPSLLGRAIGYLTNTAVGDAPCVLTGMAGAGKSVLASAVVRDEKVREHFHAGMFWVRA-RDAKDQLHACLEGFALRVASTSGTTSPGLGSVEEVT----RYLKAVC 331
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF10_9PHAE) HSP 1 Score: 356 bits (913), Expect = 1.130e-112 Identity = 187/270 (69.26%), Postives = 204/270 (75.56%), Query Frame = 2
Query: 167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAPVLGSVEEAT 976
P P EAL WM T VGVLD ASVGPLVPVCQAFK+L+EAAEGAA QDKL+ L+ RC LTTVLIQH R VGPLAQVQKPMKDF+ TN+L FCHR D TL FEEGLR I++DIALVDGLEHH LLL + LRPPTLP MAAVP GAI LTDA+VSRP +L A+ YLTNTA G APCVLTGMAG GKSVL SAVVRDEKVREHF A FWWR GR +KD+LHE+LEG VLRVAS+ GT P+LGSVEE T
Sbjct: 262 PTPVQEALAWMATATVGVLDIASVGPLVPVCQAFKALIEAAEGAAESQDKLQRLVPRCTMLTTVLIQHHRAVGPLAQVQKPMKDFIVTTNRLL---------------FCHRTDLSTLADFEEGLRGITNDIALVDGLEHHQLLLAMHGHLRPPTLPDMAAVPRGAISLTDAHVSRPLMLERAIDYLTNTARGDAPCVLTGMAGGGKSVLASAVVRDEKVREHFSAGIFWWRVGRISKDRLHEWLEGLVLRVASASGTTPPMLGSVEEVT 516
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE) HSP 1 Score: 342 bits (876), Expect = 1.150e-108 Identity = 189/281 (67.26%), Postives = 204/281 (72.60%), Query Frame = 2
Query: 167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAPVLGSVEEATVT*KRYVRTPC 1009
P P EAL WM T VGVLD SVGPL PVCQAFK L+EAAEGAA QDKLKGLISRC FLTTVLIQHDR VGPLAQ GGK RA FCHR+D TLT FEE LR IS+DIALVDGLEH LLL V RQLRPPTLP+MA+VP+G I LTD ++SRPSLL A+ YLTNTA+G APCVLTGMAGAGKSVL SAVV+ EKVREHFHA +W RA RDAKDQLH LEG LRVAS+ GT AP LGSVEE T RY++ C
Sbjct: 61 PTPVQEALAWMATATVGVLDMTSVGPLEPVCQAFKGLIEAAEGAAESQDKLKGLISRCPFLTTVLIQHDRAVGPLAQ------------------------GGKCRALFCHRSDLSTLTDFEERLRTISNDIALVDGLEHQQLLLAVYRQLRPPTLPAMASVPAGPISLTDGHISRPSLLGRAIGYLTNTAVGDAPCVLTGMAGAGKSVLASAVVQVEKVREHFHAGMYWVRA-RDAKDQLHACLEGLALRVASTSGTTAPGLGSVEEVT----RYLKAVC 312
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 296 bits (758), Expect = 9.520e-85 Identity = 164/274 (59.85%), Postives = 189/274 (68.98%), Query Frame = 2
Query: 167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFL-TDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAP-----VLGSVEE 970
P P EAL WMTT+AVGVL ASVGPLVPVC+AFK+L+EAAEGAA CQDKL+ L+S+CAFL TVLIQH R VGPLAQVQKP++DFV TN+LA FAA+WAKGGK RA FCHR D L GFEE LRRI DIALVDGLEHH L L L PP+LP MAAVP+GA+ L + +YV R ++ + LT AP + GM G GKSVL SAVVR VREHF FW R GR AK L L+G + R + T AP VL S+E+
Sbjct: 84 PTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQVQKPIQDFVATTNELAGFAARWAKGGKCRAFFCHRPDLSALAGFEECLRRIRSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPAGALELPSSSYVERAAV-QEVADGLTAPEESRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG-LARDVGAAPTDAPCGVPRVLDSLEQ 355
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 291 bits (745), Expect = 2.330e-83 Identity = 154/248 (62.10%), Postives = 175/248 (70.56%), Query Frame = 2
Query: 167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFL-TDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEG 907
P P EAL WMTT+AVGVL ASVGPLVPVC+AFK+L+EAAEGAA CQDKL+ L+S+CAFL TVLIQH R VGPLAQVQKP++DFV TN+LA FAA+WAKGGK RA CHR D L GFEE LRRI DIALVDGLEHH L L L PP+LP MAAVP+GA+ L + +YV R ++ + LT AP + GM G GKSVL SA VR VREHF FW R GR AK L L+G
Sbjct: 101 PTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQVQKPIQDFVVTTNELAGFAARWAKGGKCRAFCCHRPDLSALAGFEECLRRIGSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPTGALELPSSSYVERAAV-QEVADGLTTPEESRAPYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG 347
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 274 bits (701), Expect = 1.600e-80 Identity = 153/262 (58.40%), Postives = 175/262 (66.79%), Query Frame = 2
Query: 167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLT-DAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAP 949
P A EAL W+ T VGVLD ASVGPLVPVC+AFK+L+EAAEGAA Q KL+ L+S+CAFL TVLIQH R VGPLAQV KP++DFV TN LA FAA+WA GGK RA FCHR D L FEE LRRI DIALVDGLEHH L L L PP+LP MAAVP+GA+ L +YV R ++ + LT+ AP + GM G GKSVL SAVVR VREHF FW R GR AK L L+G + R + T AP
Sbjct: 47 PTVAQEALTWIATATVGVLDVASVGPLVPVCEAFKALIEAAEGAAESQHKLQSLVSQCAFLATVLIQHGRAVGPLAQVHKPIEDFVVTTNDLAGFAARWANGGKCRAFFCHRPDLSALADFEECLRRIRSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPAGALELPCSSYVERAAV-QEVADGLTSPEDPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG-LAREMGAARTDAP 306
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 275 bits (703), Expect = 2.280e-77 Identity = 157/273 (57.51%), Postives = 180/273 (65.93%), Query Frame = 2
Query: 167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAP-----VLGSVEE 970
P A EAL WMTT AVGVLD ASVGPLVPVCQA K+L+EAAEGAA C+DK++ L+S+CAFL TVLIQH R VG LAQV KP++DFV TN+LA FAA+WAK GK RA FCHR D L GFEE LR I DIALVDGLE H L L L LRPP L MAAVP+GA+ L YV R ++ + LT AP + G+ G GKSVL SAVVR VREHF W R GR AK+ L L+G + R T AP VL S+E+
Sbjct: 59 PTLAQEALTWMTTAAVGVLDVASVGPLVPVCQALKALIEAAEGAAECEDKVQSLVSQCAFLATVLIQHGRAVGALAQVHKPIQDFVVTTNELAGFAARWAKDGKCRAFFCHRPDLSALAGFEECLRGIRSDIALVDGLEQHQLFLAALPSLRPPRLLDMAAVPAGALDLPRGYVERAAV-QEVADGLTAPEEPRAPYTVVGLGGGGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQG-LAREMGVAPTDAPHAVPQVLDSLEQ 329
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW28_9PHAE) HSP 1 Score: 236 bits (602), Expect = 7.200e-69 Identity = 131/229 (57.21%), Postives = 151/229 (65.94%), Query Frame = 2
Query: 167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRF 853
P P EAL WM T+AVGVLD ASVGPL PVCQAFK+L+EAAEGA Q+KL+ L+SRC FLTTVLI+H R V PLAQVQ P+ DFV TNKLAAFA FCHR D TLT FEEGLRRI DI DGLE+H + + R L PP+LP MAAVP+GA+ L +YV R ++ + LTN AP GM G GKSVL SAVVR V +HF R+
Sbjct: 8 PSPVQEALPWMATSAVGVLDIASVGPLEPVCQAFKALIEAAEGAVESQEKLQSLVSRCRFLTTVLIRHRRAVDPLAQVQTPIGDFVVTTNKLAAFAESGPGVASAGRFFCHRTDLSTLTDFEEGLRRIGADINSEDGLEYHQQSIGLGRALLPPSLPDMAAVPAGALALPHSYVERAAV-QEVADGLTNPEEPRAPYSAVGMGGGGKSVLASAVVRKSSVTQHFRGGRW 235
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE) HSP 1 Score: 193 bits (490), Expect = 1.280e-52 Identity = 115/268 (42.91%), Postives = 154/268 (57.46%), Query Frame = 2
Query: 167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAPVLGSVEE 970
P A +AL WM + AVG+LD ASVGPL PVCQAF +L+EAA+GA + L+ L++ CAFL VLI+H + V L V KP+ +FV T +LA A A K A CH+ D + F++ LRR DI + L+ ++ + + RP LP MA VP+ A+ L ++V R L + LT T AP VL GM GAGKS+L S+VVR E+VR+HF A FW R G +DQL EG + R+A + S+EE
Sbjct: 57 PEGARDALEWMASTAVGLLDVASVGPLTPVCQAFTALIEAAQGAMEVVENLRELVTWCAFLVGVLIEHGKQVDNLKAVNKPLNEFVATTGELAKRANVVAGRSKCMAFLCHKKDAKMMASFDDKLRRFWTDIQGLAVLDIQEIVTRMEERSRPLPLPDMADVPAAALKLPPSHVKRVGLEAEILKSLTATDASGAPYVLLGMGGAGKSLLASSVVRTEEVRKHFRAGAFWLRVGPGGEDQLQALFEG-LARLAIPEAKLPQRFNSLEE 323
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT5_ECTSI) HSP 1 Score: 173 bits (438), Expect = 4.310e-48 Identity = 87/109 (79.82%), Postives = 89/109 (81.65%), Query Frame = 2
Query: 167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACF 493
P P EAL WM T VGVLDTASVGPLVPVCQAFK+L+EAAE AA QDKLKGLISRCAFLTTVLIQHDR VG LAQVQKPMKDFV TNKLA F AKW KGGK R F
Sbjct: 56 PTPVQEALAWMATTTVGVLDTASVGPLVPVCQAFKALIEAAERAADGQDKLKGLISRCAFLTTVLIQHDRAVGRLAQVQKPMKDFVATTNKLAEFTAKWTKGGKRRVFF 164 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1097.842.1 >prot_Ecto-sp9_F_contig1097.842.1 ID=prot_Ecto-sp9_F_contig1097.842.1|Name=mRNA_Ecto-sp9_F_contig1097.842.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=263bp MTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFback to top mRNA from alignment at Ecto-sp9_F_contig1097:1454..3342+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1097.842.1 ID=mRNA_Ecto-sp9_F_contig1097.842.1|Name=mRNA_Ecto-sp9_F_contig1097.842.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1889bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:1454..3342+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1097:1454..3342+ >mRNA_Ecto-sp9_F_contig1097.842.1 ID=mRNA_Ecto-sp9_F_contig1097.842.1|Name=mRNA_Ecto-sp9_F_contig1097.842.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1578bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:1454..3342+ (Ectocarpus species9 EcSCA_722f female)back to top |