mRNA_Ecto-sp9_F_contig1097.842.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1097.842.1
Unique NamemRNA_Ecto-sp9_F_contig1097.842.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 408 bits (1048), Expect = 4.710e-125
Identity = 215/281 (76.51%), Postives = 229/281 (81.49%), Query Frame = 2
Query:  167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAPVLGSVEEATVT*KRYVRTPC 1009
            P P  EAL WM    VGVLD ASVGPL PVCQAFK L+EAAEGAA  QDKLKGLISRCAFLTTVLIQHDR VGPLAQVQKPMKDFV  TN LAAFAA WAKGGK RA FCHR+DR TLT FEEGLR IS+DIALVDGLEHH LLL V RQLRPPTLP+MA+VP+G I LTD ++SRPSLL  A+ YLTNTA+G APCVLTGMAGAGKSVL SAVVRDEKVREHFHA  FW RA RDAKDQLH  LEG  LRVAS+ GT +P LGSVEE T    RY++  C
Sbjct:   56 PTPVQEALVWMARATVGVLDIASVGPLEPVCQAFKGLIEAAEGAAESQDKLKGLISRCAFLTTVLIQHDRAVGPLAQVQKPMKDFVATTNDLAAFAATWAKGGKCRALFCHRSDRSTLTDFEEGLRTISNDIALVDGLEHHQLLLAVYRQLRPPTLPAMASVPAGPISLTDGHISRPSLLGRAIGYLTNTAVGDAPCVLTGMAGAGKSVLASAVVRDEKVREHFHAGMFWVRA-RDAKDQLHACLEGFALRVASTSGTTSPGLGSVEEVT----RYLKAVC 331          
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF10_9PHAE)

HSP 1 Score: 356 bits (913), Expect = 1.130e-112
Identity = 187/270 (69.26%), Postives = 204/270 (75.56%), Query Frame = 2
Query:  167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAPVLGSVEEAT 976
            P P  EAL WM T  VGVLD ASVGPLVPVCQAFK+L+EAAEGAA  QDKL+ L+ RC  LTTVLIQH R VGPLAQVQKPMKDF+  TN+L                FCHR D  TL  FEEGLR I++DIALVDGLEHH LLL +   LRPPTLP MAAVP GAI LTDA+VSRP +L  A+ YLTNTA G APCVLTGMAG GKSVL SAVVRDEKVREHF A  FWWR GR +KD+LHE+LEG VLRVAS+ GT  P+LGSVEE T
Sbjct:  262 PTPVQEALAWMATATVGVLDIASVGPLVPVCQAFKALIEAAEGAAESQDKLQRLVPRCTMLTTVLIQHHRAVGPLAQVQKPMKDFIVTTNRLL---------------FCHRTDLSTLADFEEGLRGITNDIALVDGLEHHQLLLAMHGHLRPPTLPDMAAVPRGAISLTDAHVSRPLMLERAIDYLTNTARGDAPCVLTGMAGGGKSVLASAVVRDEKVREHFSAGIFWWRVGRISKDRLHEWLEGLVLRVASASGTTPPMLGSVEEVT 516          
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 342 bits (876), Expect = 1.150e-108
Identity = 189/281 (67.26%), Postives = 204/281 (72.60%), Query Frame = 2
Query:  167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAPVLGSVEEATVT*KRYVRTPC 1009
            P P  EAL WM T  VGVLD  SVGPL PVCQAFK L+EAAEGAA  QDKLKGLISRC FLTTVLIQHDR VGPLAQ                        GGK RA FCHR+D  TLT FEE LR IS+DIALVDGLEH  LLL V RQLRPPTLP+MA+VP+G I LTD ++SRPSLL  A+ YLTNTA+G APCVLTGMAGAGKSVL SAVV+ EKVREHFHA  +W RA RDAKDQLH  LEG  LRVAS+ GT AP LGSVEE T    RY++  C
Sbjct:   61 PTPVQEALAWMATATVGVLDMTSVGPLEPVCQAFKGLIEAAEGAAESQDKLKGLISRCPFLTTVLIQHDRAVGPLAQ------------------------GGKCRALFCHRSDLSTLTDFEERLRTISNDIALVDGLEHQQLLLAVYRQLRPPTLPAMASVPAGPISLTDGHISRPSLLGRAIGYLTNTAVGDAPCVLTGMAGAGKSVLASAVVQVEKVREHFHAGMYWVRA-RDAKDQLHACLEGLALRVASTSGTTAPGLGSVEEVT----RYLKAVC 312          
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 9.520e-85
Identity = 164/274 (59.85%), Postives = 189/274 (68.98%), Query Frame = 2
Query:  167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFL-TDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAP-----VLGSVEE 970
            P P  EAL WMTT+AVGVL  ASVGPLVPVC+AFK+L+EAAEGAA CQDKL+ L+S+CAFL TVLIQH R VGPLAQVQKP++DFV  TN+LA FAA+WAKGGK RA FCHR D   L GFEE LRRI  DIALVDGLEHH   L  L  L PP+LP MAAVP+GA+ L + +YV R ++ +     LT      AP  + GM G GKSVL SAVVR   VREHF    FW R GR AK  L   L+G + R   +  T AP     VL S+E+
Sbjct:   84 PTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQVQKPIQDFVATTNELAGFAARWAKGGKCRAFFCHRPDLSALAGFEECLRRIRSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPAGALELPSSSYVERAAV-QEVADGLTAPEESRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG-LARDVGAAPTDAPCGVPRVLDSLEQ 355          
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 2.330e-83
Identity = 154/248 (62.10%), Postives = 175/248 (70.56%), Query Frame = 2
Query:  167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFL-TDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEG 907
            P P  EAL WMTT+AVGVL  ASVGPLVPVC+AFK+L+EAAEGAA CQDKL+ L+S+CAFL TVLIQH R VGPLAQVQKP++DFV  TN+LA FAA+WAKGGK RA  CHR D   L GFEE LRRI  DIALVDGLEHH   L  L  L PP+LP MAAVP+GA+ L + +YV R ++ +     LT      AP  + GM G GKSVL SA VR   VREHF    FW R GR AK  L   L+G
Sbjct:  101 PTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQVQKPIQDFVVTTNELAGFAARWAKGGKCRAFCCHRPDLSALAGFEECLRRIGSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPTGALELPSSSYVERAAV-QEVADGLTTPEESRAPYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG 347          
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 1.600e-80
Identity = 153/262 (58.40%), Postives = 175/262 (66.79%), Query Frame = 2
Query:  167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLT-DAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAP 949
            P  A EAL W+ T  VGVLD ASVGPLVPVC+AFK+L+EAAEGAA  Q KL+ L+S+CAFL TVLIQH R VGPLAQV KP++DFV  TN LA FAA+WA GGK RA FCHR D   L  FEE LRRI  DIALVDGLEHH   L  L  L PP+LP MAAVP+GA+ L   +YV R ++ +     LT+     AP  + GM G GKSVL SAVVR   VREHF    FW R GR AK  L   L+G + R   +  T AP
Sbjct:   47 PTVAQEALTWIATATVGVLDVASVGPLVPVCEAFKALIEAAEGAAESQHKLQSLVSQCAFLATVLIQHGRAVGPLAQVHKPIEDFVVTTNDLAGFAARWANGGKCRAFFCHRPDLSALADFEECLRRIRSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPAGALELPCSSYVERAAV-QEVADGLTSPEDPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQG-LAREMGAARTDAP 306          
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 2.280e-77
Identity = 157/273 (57.51%), Postives = 180/273 (65.93%), Query Frame = 2
Query:  167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAP-----VLGSVEE 970
            P  A EAL WMTT AVGVLD ASVGPLVPVCQA K+L+EAAEGAA C+DK++ L+S+CAFL TVLIQH R VG LAQV KP++DFV  TN+LA FAA+WAK GK RA FCHR D   L GFEE LR I  DIALVDGLE H L L  L  LRPP L  MAAVP+GA+ L   YV R ++ +     LT      AP  + G+ G GKSVL SAVVR   VREHF     W R GR AK+ L   L+G + R      T AP     VL S+E+
Sbjct:   59 PTLAQEALTWMTTAAVGVLDVASVGPLVPVCQALKALIEAAEGAAECEDKVQSLVSQCAFLATVLIQHGRAVGALAQVHKPIQDFVVTTNELAGFAARWAKDGKCRAFFCHRPDLSALAGFEECLRGIRSDIALVDGLEQHQLFLAALPSLRPPRLLDMAAVPAGALDLPRGYVERAAV-QEVADGLTAPEEPRAPYTVVGLGGGGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQG-LAREMGVAPTDAPHAVPQVLDSLEQ 329          
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW28_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 7.200e-69
Identity = 131/229 (57.21%), Postives = 151/229 (65.94%), Query Frame = 2
Query:  167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRF 853
            P P  EAL WM T+AVGVLD ASVGPL PVCQAFK+L+EAAEGA   Q+KL+ L+SRC FLTTVLI+H R V PLAQVQ P+ DFV  TNKLAAFA            FCHR D  TLT FEEGLRRI  DI   DGLE+H   + + R L PP+LP MAAVP+GA+ L  +YV R ++ +     LTN     AP    GM G GKSVL SAVVR   V +HF   R+
Sbjct:    8 PSPVQEALPWMATSAVGVLDIASVGPLEPVCQAFKALIEAAEGAVESQEKLQSLVSRCRFLTTVLIRHRRAVDPLAQVQTPIGDFVVTTNKLAAFAESGPGVASAGRFFCHRTDLSTLTDFEEGLRRIGADINSEDGLEYHQQSIGLGRALLPPSLPDMAAVPAGALALPHSYVERAAV-QEVADGLTNPEEPRAPYSAVGMGGGGKSVLASAVVRKSSVTQHFRGGRW 235          
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.280e-52
Identity = 115/268 (42.91%), Postives = 154/268 (57.46%), Query Frame = 2
Query:  167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFCHRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMAAVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVLPSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIAPVLGSVEE 970
            P  A +AL WM + AVG+LD ASVGPL PVCQAF +L+EAA+GA    + L+ L++ CAFL  VLI+H + V  L  V KP+ +FV  T +LA  A   A   K  A  CH+ D   +  F++ LRR   DI  +  L+   ++  +  + RP  LP MA VP+ A+ L  ++V R  L    +  LT T    AP VL GM GAGKS+L S+VVR E+VR+HF A  FW R G   +DQL    EG + R+A     +     S+EE
Sbjct:   57 PEGARDALEWMASTAVGLLDVASVGPLTPVCQAFTALIEAAQGAMEVVENLRELVTWCAFLVGVLIEHGKQVDNLKAVNKPLNEFVATTGELAKRANVVAGRSKCMAFLCHKKDAKMMASFDDKLRRFWTDIQGLAVLDIQEIVTRMEERSRPLPLPDMADVPAAALKLPPSHVKRVGLEAEILKSLTATDASGAPYVLLGMGGAGKSLLASSVVRTEEVRKHFRAGAFWLRVGPGGEDQLQALFEG-LARLAIPEAKLPQRFNSLEE 323          
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT5_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 4.310e-48
Identity = 87/109 (79.82%), Postives = 89/109 (81.65%), Query Frame = 2
Query:  167 PLPAHEALGWMTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAFLTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACF 493
            P P  EAL WM T  VGVLDTASVGPLVPVCQAFK+L+EAAE AA  QDKLKGLISRCAFLTTVLIQHDR VG LAQVQKPMKDFV  TNKLA F AKW KGGK R  F
Sbjct:   56 PTPVQEALAWMATTTVGVLDTASVGPLVPVCQAFKALIEAAERAADGQDKLKGLISRCAFLTTVLIQHDRAVGRLAQVQKPMKDFVATTNKLAEFTAKWTKGGKRRVFF 164          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1097.842.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NB-ARC4.710e-12576.51and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
NB-ARC1.130e-11269.26domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
NB-ARC1.150e-10867.26domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
NB-ARC9.520e-8559.85and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
NB-ARC2.330e-8362.10and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
NB-ARC1.600e-8058.40domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
NB-ARC2.280e-7757.51and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
Uncharacterized7.200e-6957.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
NB-ARC1.280e-5242.91domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized4.310e-4879.82protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1097contigEcto-sp9_F_contig1097:1454..3342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score394.4
Seed ortholog evalue4.1e-107
Seed eggNOG ortholog2880.D7G6W2
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNB-ARC and TPR repeat-containing protein - likely pseudogene
Ec32 orthologEc-26_002110.1
Exons3
Model size1527
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1097.842.1prot_Ecto-sp9_F_contig1097.842.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1097 1786..2574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928329.1280215-UTR-Ecto-sp9_F_contig1097:1453..15221622928329.1280215-UTR-Ecto-sp9_F_contig1097:1453..1522Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 1454..1522 +
1692277835.025288-UTR-Ecto-sp9_F_contig1097:1453..15221692277835.025288-UTR-Ecto-sp9_F_contig1097:1453..1522Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 1454..1522 +
1622928329.1391566-UTR-Ecto-sp9_F_contig1097:1658..17851622928329.1391566-UTR-Ecto-sp9_F_contig1097:1658..1785Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 1659..1785 +
1692277835.035768-UTR-Ecto-sp9_F_contig1097:1658..17851692277835.035768-UTR-Ecto-sp9_F_contig1097:1658..1785Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 1659..1785 +
1622928329.160643-UTR-Ecto-sp9_F_contig1097:2574..28251622928329.160643-UTR-Ecto-sp9_F_contig1097:2574..2825Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 2575..2825 +
1692277835.0523055-UTR-Ecto-sp9_F_contig1097:2574..28251692277835.0523055-UTR-Ecto-sp9_F_contig1097:2574..2825Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 2575..2825 +
1622928329.1743379-UTR-Ecto-sp9_F_contig1097:3051..33421622928329.1743379-UTR-Ecto-sp9_F_contig1097:3051..3342Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 3052..3342 +
1692277835.070388-UTR-Ecto-sp9_F_contig1097:3051..33421692277835.070388-UTR-Ecto-sp9_F_contig1097:3051..3342Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 3052..3342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928329.1503327-CDS-Ecto-sp9_F_contig1097:1785..25741622928329.1503327-CDS-Ecto-sp9_F_contig1097:1785..2574Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 1786..2574 +
1692277835.0440383-CDS-Ecto-sp9_F_contig1097:1785..25741692277835.0440383-CDS-Ecto-sp9_F_contig1097:1785..2574Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 1786..2574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1097.842.1

>prot_Ecto-sp9_F_contig1097.842.1 ID=prot_Ecto-sp9_F_contig1097.842.1|Name=mRNA_Ecto-sp9_F_contig1097.842.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=263bp
MTTNAVGVLDTASVGPLVPVCQAFKSLVEAAEGAAGCQDKLKGLISRCAF
LTTVLIQHDRGVGPLAQVQKPMKDFVTMTNKLAAFAAKWAKGGKWRACFC
HRADRITLTGFEEGLRRISDDIALVDGLEHHHLLLVVLRQLRPPTLPSMA
AVPSGAIFLTDAYVSRPSLLRSAVVYLTNTALGYAPCVLTGMAGAGKSVL
PSAVVRDEKVREHFHARRFWWRAGRDAKDQLHEFLEGPVLRVASSLGTIA
PVLGSVEEATVT*
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mRNA from alignment at Ecto-sp9_F_contig1097:1454..3342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1097.842.1 ID=mRNA_Ecto-sp9_F_contig1097.842.1|Name=mRNA_Ecto-sp9_F_contig1097.842.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1889bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:1454..3342+ (Ectocarpus species9 EcSCA_722f female)
ATGCAGCATGCTCCCGCCAGTGGAGGCCAAGCGGGCCTTGTAGCAGCGGT GGAGCCCACCGCGACGGAGGTGCGTCTCATCTTCAAACGAAATACACGCT TTCAGGGATTTGATCGGAACATATGTCCAACCATGTCCAGTCCTTGAATC GAACTCAGAAAGAGCTGTTTCATGCTTGACCTTCCTCCCTCCCTCCCCTT CGCAGCGTCTTGATCACGTTGGTACCCTGCTCGCCGAAAAGAAGCCCTGG CCGGCCTTTCTGACCATCGCTGCTCAAGCGACGGAGGAGTGGGAGGCTTG CCCCACTTCCCGCCCACGAGGCCCTGGGATGGATGACGACAAATGCAGTT GGGGTGCTCGACACTGCGAGCGTAGGGCCCTTGGTTCCCGTGTGCCAGGC CTTCAAGTCGTTGGTCGAGGCTGCCGAAGGTGCAGCGGGATGCCAGGACA AGCTCAAGGGCCTGATATCCCGGTGCGCTTTCCTCACCACCGTCTTGATT CAGCACGACCGAGGGGTTGGTCCCCTCGCCCAGGTGCAGAAGCCCATGAA GGACTTCGTCACCATGACCAACAAGCTGGCGGCGTTTGCGGCGAAGTGGG CCAAGGGCGGCAAGTGGAGGGCGTGTTTTTGCCACCGCGCCGACCGAATC ACTCTCACCGGCTTCGAGGAGGGTCTCCGTAGGATCAGCGACGACATCGC CTTGGTGGACGGGCTGGAGCACCACCATCTTTTGTTGGTGGTGCTTCGCC AATTGCGCCCTCCGACGTTGCCGTCTATGGCCGCAGTGCCTTCCGGCGCG ATCTTCCTGACCGATGCCTACGTTTCGCGGCCTTCATTACTCCGGAGCGC CGTTGTTTACCTCACGAACACGGCTCTGGGTTACGCGCCCTGCGTGCTGA CCGGCATGGCCGGAGCGGGAAAGTCGGTCCTGCCGTCCGCAGTTGTACGG GATGAAAAGGTTCGTGAGCACTTTCATGCGAGAAGGTTTTGGTGGAGGGC GGGTCGTGACGCGAAGGATCAACTCCATGAGTTTTTGGAAGGCCCTGTGT TGCGAGTGGCATCAAGTTTAGGGACTATTGCCCCCGTCCTTGGCAGCGTG GAAGAAGCGACCGTCACCTGAAAGCGATATGTACGGACGCCGTGTCCCCG CGATTGGTCGTGCTCGACGACGTGTGGGAGTGGGAGGTCGTTGACGCCCT GAAGCTTACGGGGATGCAGCTGCTGGTGACCACGCGCGACCGTTCGGTGG TATCGATGCCAGGAGAGTGCGTAGAGGTGGGGGATATGCAGGAGGACGAG GCGCTGGAGGTGCTGAGAGTCGGTTGCGGGGCACCCAAGAACCTCGACCT TCCGCGTGCTCAGGCGTTGCAGGTGACCGCCTGGACATTCGAATCGATTT CTTATTGCGGACAGATTTACTTTGCTCCAGCTGATTGCCTTTCGTCCTGC ATTGTTCGGAACAACAGCGATAATTCTGGCACGAATGGTATATATGGGTC CCTTGTGTTGAGGTTGTGAGGCGGTGCTATATTATTTTGTGCGGTCGTCC TAGGCCGCATCGATTCAGCTACGAACGCGTCCGCCCCGTTCGCACCAGGT CGTCGGTGACTGTGGGAAACTTCCACTCTCTCTTGGCCTCGCGGCGCCGC TGCTCATGGGTCCCCCACAAGATCCCAACTCCTGGCGAGCTTTGCATGAG GCTTTGTACAAAGCGATGGCGACACGGCTGGGGACCGACCGCATCATGTG CCGGAACGAGTAGATGCTGTCTTGGAATTGAGCTTGGGCGCCATGACAGA CGATCCGGCCAAGCGGAAGAGATGCCTGTTCCTGGTGGTACTCGCCCCGG GGACGCTGGTACCGTCTGACATGCTGAAAGATTTGTGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1097:1454..3342+

>mRNA_Ecto-sp9_F_contig1097.842.1 ID=mRNA_Ecto-sp9_F_contig1097.842.1|Name=mRNA_Ecto-sp9_F_contig1097.842.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1578bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:1454..3342+ (Ectocarpus species9 EcSCA_722f female)
ATGACGACAAATGCAGTTGGGGTGCTCGACACTGCGAGCGTAGGGCCCTT
GGTTCCCGTGTGCCAGGCCTTCAAGTCGTTGGTCGAGGCTGCCGAAGGTG
CAGCGGGATGCCAGGACAAGCTCAAGGGCCTGATATCCCGGTGCGCTTTC
CTCACCACCGTCTTGATTCAGCACGACCGAGGGGTTGGTCCCCTCGCCCA
GGTGCAGAAGCCCATGAAGGACTTCGTCACCATGACCAACAAGCTGGCGG
CGTTTGCGGCGAAGTGGGCCAAGGGCGGCAAGTGGAGGGCGTGTTTTTGC
CACCGCGCCGACCGAATCACTCTCACCGGCTTCGAGGAGGGTCTCCGTAG
GATCAGCGACGACATCGCCTTGGTGGACGGGCTGGAGCACCACCATCTTT
TGTTGGTGGTGCTTCGCCAATTGCGCCCTCCGACGTTGCCGTCTATGGCC
GCAGTGCCTTCCGGCGCGATCTTCCTGACCGATGCCTACGTTTCGCGGCC
TTCATTACTCCGGAGCGCCGTTGTTTACCTCACGAACACGGCTCTGGGTT
ACGCGCCCTGCGTGCTGACCGGCATGGCCGGAGCGGGAAAGTCGGTCCTG
CCGTCCGCAGTTGTACGGGATGAAAAGGTTCGTGAGCACTTTCATGCGAG
AAGGTTTTGGTGGAGGGCGGGTCGTGACGCGAAGGATCAACTCCATGAGT
TTTTGGAAGGCCCTGTGTTGCGAGTGGCATCAAGTTTAGGGACTATTGCC
CCCGTCCTTGGCAGCGTGGAAGAAGCGACCGTCACCTGAATGACGACAAA
TGCAGTTGGGGTGCTCGACACTGCGAGCGTAGGGCCCTTGGTTCCCGTGT
GCCAGGCCTTCAAGTCGTTGGTCGAGGCTGCCGAAGGTGCAGCGGGATGC
CAGGACAAGCTCAAGGGCCTGATATCCCGGTGCGCTTTCCTCACCACCGT
CTTGATTCAGCACGACCGAGGGGTTGGTCCCCTCGCCCAGGTGCAGAAGC
CCATGAAGGACTTCGTCACCATGACCAACAAGCTGGCGGCGTTTGCGGCG
AAGTGGGCCAAGGGCGGCAAGTGGAGGGCGTGTTTTTGCCACCGCGCCGA
CCGAATCACTCTCACCGGCTTCGAGGAGGGTCTCCGTAGGATCAGCGACG
ACATCGCCTTGGTGGACGGGCTGGAGCACCACCATCTTTTGTTGGTGGTG
CTTCGCCAATTGCGCCCTCCGACGTTGCCGTCTATGGCCGCAGTGCCTTC
CGGCGCGATCTTCCTGACCGATGCCTACGTTTCGCGGCCTTCATTACTCC
GGAGCGCCGTTGTTTACCTCACGAACACGGCTCTGGGTTACGCGCCCTGC
GTGCTGACCGGCATGGCCGGAGCGGGAAAGTCGGTCCTGCCGTCCGCAGT
TGTACGGGATGAAAAGGTTCGTGAGCACTTTCATGCGAGAAGGTTTTGGT
GGAGGGCGGGTCGTGACGCGAAGGATCAACTCCATGAGTTTTTGGAAGGC
CCTGTGTTGCGAGTGGCATCAAGTTTAGGGACTATTGCCCCCGTCCTTGG
CAGCGTGGAAGAAGCGACCGTCACCTGA
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