mRNA_Ecto-sp9_F_contig10966.840.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10966.840.1
Unique NamemRNA_Ecto-sp9_F_contig10966.840.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10966.840.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10966contigEcto-sp9_F_contig10966:2520..3353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size183
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10966.840.1prot_Ecto-sp9_F_contig10966.840.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10966 2626..3353 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928328.8353357-UTR-Ecto-sp9_F_contig10966:2519..26251622928328.8353357-UTR-Ecto-sp9_F_contig10966:2519..2625Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10966 2520..2625 -
1692277834.9347122-UTR-Ecto-sp9_F_contig10966:2519..26251692277834.9347122-UTR-Ecto-sp9_F_contig10966:2519..2625Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10966 2520..2625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928328.8544328-CDS-Ecto-sp9_F_contig10966:2625..26421622928328.8544328-CDS-Ecto-sp9_F_contig10966:2625..2642Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10966 2626..2642 -
1692277834.9446087-CDS-Ecto-sp9_F_contig10966:2625..26421692277834.9446087-CDS-Ecto-sp9_F_contig10966:2625..2642Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10966 2626..2642 -
1622928328.8650978-CDS-Ecto-sp9_F_contig10966:3187..33531622928328.8650978-CDS-Ecto-sp9_F_contig10966:3187..3353Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10966 3188..3353 -
1692277834.9555147-CDS-Ecto-sp9_F_contig10966:3187..33531692277834.9555147-CDS-Ecto-sp9_F_contig10966:3187..3353Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10966 3188..3353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10966.840.1

>prot_Ecto-sp9_F_contig10966.840.1 ID=prot_Ecto-sp9_F_contig10966.840.1|Name=mRNA_Ecto-sp9_F_contig10966.840.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=61bp
FVQFLSRYISLPLFNNNSGSRQKVWLRRSQGSLLPRLLCHLNASEQDDNG
KLVMAASHGG*
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mRNA from alignment at Ecto-sp9_F_contig10966:2520..3353-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10966.840.1 ID=mRNA_Ecto-sp9_F_contig10966.840.1|Name=mRNA_Ecto-sp9_F_contig10966.840.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=834bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10966:2520..3353- (Ectocarpus species9 EcSCA_722f female)
TTTGTTCAGTTCCTGTCTCGCTACATCTCTCTCCCGCTCTTCAACAACAA
CAGCGGCAGCAGACAGAAGGTTTGGCTTCGGAGAAGCCAGGGTTCTCTCC
TGCCGCGCTTGCTTTGCCATCTGAACGCCTCGGAACAAGATGACAACGGA
AAATTGGTCATGGCAGGTACGTGTGTGTATGGCCAGCGACAGATAGGCAT
CTGCATGCTTACCAGTAAAACAAAGCAGTTACAGACGGCGCCGAGATACG
CACCTACTCCGTGCGCACCTGCATCGGGGTATTTATTTTCTAGCACGTTT
CTTGTTCGCCGTTTTTTGTTTCTACGTTTTCTGGCACCTGGCACTGCCTC
TCATAAAACGAGGAAGCGAACGAACCGCACGATAGGCAATGAAGTCCCCG
ACTCCCTGTACTGTGCTGCTGTGTATGATGGTAAAATGCCTGCTGATCGA
CAAAACGACCCAAGACCAATGTCGATGACTCTGCTGTACAGCAGTAGTAG
TTGAGAGGAAGGAGATACAATAGATGTCTCCCACAGCAGTTTCCATCTCG
CTCTACACTATTCCGTTGCCTAGATGTCTGTCTGTGCAGAAGAAAATTGA
CATATAGATAGATAGAGGCGCCACGGCCGCGCTCAGCCAACGCGACACAC
GACGCGCGGCGGGGTTTGCTCATGTTTTACCTCCCTCTATACTGCTGCTG
TCATGTTGCAGCGAGCCATGGGGGCTGACACAAGCTGTAGCTCGGCGGAG
CTTTGAAAACGGAGGACACACAAAAAACAAACGGAGGACGGAACGCAGAG
GACTCGTTTCACTCCGTGTTACATGTACTTAGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10966:2520..3353-

>mRNA_Ecto-sp9_F_contig10966.840.1 ID=mRNA_Ecto-sp9_F_contig10966.840.1|Name=mRNA_Ecto-sp9_F_contig10966.840.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10966:2520..3353- (Ectocarpus species9 EcSCA_722f female)
TTTGTTCAGTTCCTGTCTCGCTACATCTCTCTCCCGCTCTTCAACAACAA
CAGCGGCAGCAGACAGAAGGTTTGGCTTCGGAGAAGCCAGGGTTCTCTCC
TGCCGCGCTTGCTTTGCCATCTGAACGCCTCGGAACAAGATGACAACGGA
AAATTGGTCATGGCAGTTTGTTCAGTTCCTGTCTCGCTACATCTCTCTCC
CGCTCTTCAACAACAACAGCGGCAGCAGACAGAAGGTTTGGCTTCGGAGA
AGCCAGGGTTCTCTCCTGCCGCGCTTGCTTTGCCATCTGAACGCCTCGGA
ACAAGATGACAACGGAAAATTGGTCATGGCAGCGAGCCATGGGGGCTGAC
GAGCCATGGGGGCTGA
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