mRNA_Ecto-sp9_F_contig10964.839.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10964.839.1
Unique NamemRNA_Ecto-sp9_F_contig10964.839.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10964.839.1 vs.
Match: Vps54_N (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 1.380e-65
Identity = 131/161 (81.37%), Postives = 133/161 (82.61%), Query Frame = -3 
Query:    2 MERKPLPPAGADAGPATPAGPGIAPAARRSTATAXXXXXXXXXXXXXXXXXXXATRRTMPGRWRERRGSPTLAGGVATGRSADPRQRTGSAGDDRELRRRKGLRGAA-GGLRSANISA--EGSGDEGELAMLHFQDVREELELSGHNLTSVLNNPRETFMD 475
            MERKPLPPAG+DAGPATPAGP I PAARRSTATA                   ATRRTM GRWRERRGSPTLAGGVATGRSADPRQRTGSAGDDRELRRRKGLRGAA GG  +ANISA  EGSGDE ELAMLHFQDVREELELSGHNLTSVLNNPRETFMD
Sbjct:    1 MERKPLPPAGSDAGPATPAGPSITPAARRSTATAPRAAADRPEQRRQSSSSS-ATRRTMQGRWRERRGSPTLAGGVATGRSADPRQRTGSAGDDRELRRRKGLRGAAAGGSGTANISASAEGSGDERELAMLHFQDVREELELSGHNLTSVLNNPRETFMD 160
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BLAST of mRNA_Ecto-sp9_F_contig10964.839.1 vs.
Match: Vacuolar (protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.990e-9
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = -3 
Query:    2 MLHFQDVREELELSGHNLTSVLNNPRETFMD 94
            MLHFQDVREELELSGHNLTSVLNNPRETFMD
Sbjct:    1 MLHFQDVREELELSGHNLTSVLNNPRETFMD 31
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10964.839.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Vps54_N1.380e-6581.37domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Vacuolar1.990e-9100.00protein sorting-associated protein 54 n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10964contigEcto-sp9_F_contig10964:2425..2967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10964.839.1prot_Ecto-sp9_F_contig10964.839.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10964 2430..2924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928328.7666662-UTR-Ecto-sp9_F_contig10964:2424..24291622928328.7666662-UTR-Ecto-sp9_F_contig10964:2424..2429Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10964 2425..2429 +
1692277834.9051943-UTR-Ecto-sp9_F_contig10964:2424..24291692277834.9051943-UTR-Ecto-sp9_F_contig10964:2424..2429Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10964 2425..2429 +
1622928328.7990668-UTR-Ecto-sp9_F_contig10964:2924..29671622928328.7990668-UTR-Ecto-sp9_F_contig10964:2924..2967Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10964 2925..2967 +
1692277834.9260092-UTR-Ecto-sp9_F_contig10964:2924..29671692277834.9260092-UTR-Ecto-sp9_F_contig10964:2924..2967Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10964 2925..2967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928328.7814517-CDS-Ecto-sp9_F_contig10964:2429..29241622928328.7814517-CDS-Ecto-sp9_F_contig10964:2429..2924Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10964 2430..2924 +
1692277834.914404-CDS-Ecto-sp9_F_contig10964:2429..29241692277834.914404-CDS-Ecto-sp9_F_contig10964:2429..2924Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10964 2430..2924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10964.839.1

>prot_Ecto-sp9_F_contig10964.839.1 ID=prot_Ecto-sp9_F_contig10964.839.1|Name=mRNA_Ecto-sp9_F_contig10964.839.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=165bp
MNVSRGLFSTDVRLCPLSSSSSRTSWKWSIASSPSSPLPSALILALRNPP
AAPLKPFLRRSSLSSPAEPVRWRGSALLPVATPPANVGEPRLSLHLPGMV
RRVADDDDEDCRCCSCRSAEALAAVAVERRAAGAMPGPAGVAGPASAPAG
GKGFRSMRGALSPV*
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mRNA from alignment at Ecto-sp9_F_contig10964:2425..2967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10964.839.1 ID=mRNA_Ecto-sp9_F_contig10964.839.1|Name=mRNA_Ecto-sp9_F_contig10964.839.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=543bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10964:2425..2967+ (Ectocarpus species9 EcSCA_722f female)
AGTCCATGAACGTCTCCCGAGGGTTGTTCAGCACGGACGTCAGGTTGTGC
CCGCTCAGCTCCAGCTCCTCCCGAACGTCCTGGAAGTGGAGCATCGCAAG
CTCCCCCTCGTCTCCGCTGCCCTCAGCACTTATATTGGCACTGCGTAATC
CTCCTGCAGCACCTCTCAAGCCCTTCCTTCGACGGAGTTCCCTGTCGTCC
CCCGCCGAACCCGTTCGCTGGCGAGGGTCGGCACTCCTGCCGGTGGCAAC
ACCCCCCGCCAACGTCGGCGAGCCGCGTCTCTCTCTCCATCTGCCTGGCA
TGGTCCGTCGTGTTGCCGATGATGATGATGAGGACTGCCGCTGTTGTTCT
TGTCGGTCTGCTGAAGCTCTCGCCGCCGTCGCTGTCGAGCGCCGCGCCGC
TGGGGCGATGCCAGGCCCAGCAGGCGTTGCCGGACCCGCATCTGCGCCAG
CAGGCGGCAAGGGTTTTCGCTCCATGCGTGGTGCCCTCTCTCCTGTCTAA
ATTCGGTCTCCTGGCAGTAGAGACGGTCCTGAGGGATGGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10964:2425..2967+

>mRNA_Ecto-sp9_F_contig10964.839.1 ID=mRNA_Ecto-sp9_F_contig10964.839.1|Name=mRNA_Ecto-sp9_F_contig10964.839.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10964:2425..2967+ (Ectocarpus species9 EcSCA_722f female)
ATGAACGTCTCCCGAGGGTTGTTCAGCACGGACGTCAGGTTGTGCCCGCT
CAGCTCCAGCTCCTCCCGAACGTCCTGGAAGTGGAGCATCGCAAGCTCCC
CCTCGTCTCCGCTGCCCTCAGCACTTATATTGGCACTGCGTAATCCTCCT
GCAGCACCTCTCAAGCCCTTCCTTCGACGGAGTTCCCTGTCGTCCCCCGC
CGAACCCGTTCGCTGGCGAGGGTCGGCACTCCTGCCGGTGGCAACACCCC
CCGCCAACGTCGGCGAGCCGCGTCTCTCTCTCCATCTGCCTGGCATGGTC
CGTCGTGTTGCCGATGATGATGATGAGGACTGCCGCTGTTGTTCTTGTCG
GTCTGCTGAAGCTCTCGCCGCCGTCGCTGTCGAGCGCCGCGCCGCTGGGG
CGATGCCAGGCCCAGCAGGCGTTGCCGGACCCGCATCTGCGCCAGCAGGC
GGCAAGGGTTTTCGCTCCATGCGTGGTGCCCTCTCTCCTGTCTAAATGAA
CGTCTCCCGAGGGTTGTTCAGCACGGACGTCAGGTTGTGCCCGCTCAGCT
CCAGCTCCTCCCGAACGTCCTGGAAGTGGAGCATCGCAAGCTCCCCCTCG
TCTCCGCTGCCCTCAGCACTTATATTGGCACTGCGTAATCCTCCTGCAGC
ACCTCTCAAGCCCTTCCTTCGACGGAGTTCCCTGTCGTCCCCCGCCGAAC
CCGTTCGCTGGCGAGGGTCGGCACTCCTGCCGGTGGCAACACCCCCCGCC
AACGTCGGCGAGCCGCGTCTCTCTCTCCATCTGCCTGGCATGGTCCGTCG
TGTTGCCGATGATGATGATGAGGACTGCCGCTGTTGTTCTTGTCGGTCTG
CTGAAGCTCTCGCCGCCGTCGCTGTCGAGCGCCGCGCCGCTGGGGCGATG
CCAGGCCCAGCAGGCGTTGCCGGACCCGCATCTGCGCCAGCAGGCGGCAA
GGGTTTTCGCTCCATGCGTGGTGCCCTCTCTCCTGTCTAA
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