mRNA_Ecto-sp9_F_contig10959.835.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Match: RCK (N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW2_9PHAE) HSP 1 Score: 461 bits (1187), Expect = 1.300e-154 Identity = 255/258 (98.84%), Postives = 256/258 (99.22%), Query Frame = 1
Query: 1 VLLCTLAFAAFPFLGGVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPTLLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG 774
VLLCTLAFAAFPFLGGVDVLEVIFHSPA+LVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLV LTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDP LLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG
Sbjct: 262 VLLCTLAFAAFPFLGGVDVLEVIFHSPAELVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLVGLTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPQLLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG 519
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Match: Na_H_Exchanger (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI4_ECTSI) HSP 1 Score: 462 bits (1190), Expect = 1.350e-154 Identity = 255/258 (98.84%), Postives = 257/258 (99.61%), Query Frame = 1
Query: 1 VLLCTLAFAAFPFLGGVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPTLLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG 774
VLLCTLAFAAFPFLGGVDVLEV+FHSPA+LVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDP LLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG
Sbjct: 473 VLLCTLAFAAFPFLGGVDVLEVVFHSPAELVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPMLLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG 730
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Match: K(+) (efflux antiporter 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF36_9STRA) HSP 1 Score: 314 bits (804), Expect = 2.570e-98 Identity = 178/258 (68.99%), Postives = 207/258 (80.23%), Query Frame = 1
Query: 1 VLLCTLAFAAFPFLGGVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPTLLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG 774
VLLCT AF AFPF+GGV +LE++F SP LV+I R+DEAVVIGAALSLSSSAFVLKILQEKG R G+A LG+LLLQDIAVVPLLVLLPIIE Q D L Q ++ALT K +GGL GILV GR +LR LF+ VA ARS+ETFVALCLLVA+G+G+LT+++GLS+TLGAF AGTLLAETNYR QVEA+IAPFRGLLLGLFF TTGA+VDP LL+EQWPTV GLL GL+ K +I S FGL+ E+ + G
Sbjct: 202 VLLCTAAFGAFPFVGGVQLLELVFKSPDALVNISRLDEAVVIGAALSLSSSAFVLKILQEKGLLRGRAGQATLGVLLLQDIAVVPLLVLLPIIENQQR-DVPLGLQASMLALTAVKAIGGLAGILVLGRVILRRLFEAVAAARSTETFVALCLLVAIGIGELTDSLGLSSTLGAFIAGTLLAETNYRMQVEADIAPFRGLLLGLFFMTTGASVDPGLLLEQWPTVIGLLGGLLLIKGVITSLVCPLFGLTKGESVRVG 458
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Match: Sodium/hydrogen (exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK7_9STRA) HSP 1 Score: 296 bits (757), Expect = 2.680e-93 Identity = 174/262 (66.41%), Postives = 200/262 (76.34%), Query Frame = 1
Query: 1 VLLCTLAFAAFPF--LGGVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQ--GGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPTLLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG 774
VLLCTLAF AFPF V ++E IF SP LV+I R+DE+VVIGAALSLSSSAFVLKILQEKG + R G+A LG+LLLQDIAVVPLLVLLPIIE Q G D L Q ++ K VGGLG ILV GRFLLR LFD VA RS+E FVALCLLVA+G+G++T+A+GLS +LGAF AGTLLAETNYR QVEA+IAPFRGLLL LFF TTGA+VDP +L EQWPTV GLL GL+ K II S+ FGL+ E+ + G
Sbjct: 103 VLLCTLAFGAFPFGEQSSVQLMESIFKSPDSLVNISRLDESVVIGAALSLSSSAFVLKILQEKGLLSGRAGQATLGVLLLQDIAVVPLLVLLPIIENQQAGAGDVPLMAQAAVLGGIALKAVGGLGAILVFGRFLLRRLFDGVAATRSTEAFVALCLLVAIGIGEVTDAMGLSASLGAFVAGTLLAETNYRMQVEADIAPFRGLLLALFFMTTGASVDPHMLWEQWPTVLGLLTGLLLVKGIITSTLGPLFGLTKGESVRVG 364
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH40_9STRA) HSP 1 Score: 271 bits (692), Expect = 8.020e-83 Identity = 157/260 (60.38%), Postives = 193/260 (74.23%), Query Frame = 1
Query: 1 VLLCTLAFAAFPFLGGVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQ-GGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPTLLVEQWPTVTGLLLGLVTFKSIIISSASLG-FGLSAPEAAKTG 774
V+LCT+AF FPF GGV++LEV+FHS LVSI R DEA++IG+ALSLSSSAFVLK+LQEK + AR G A LGILLLQD+AVVPLL L+P+IE+Q GT T L T +G LGG+L G +LR +F +VA RSSE FVA+ LLVALGMG+ T+ +GLS+TLGAFAAG LLAETNY+ Q+EA+I PFRGL+LGLFF TGATVDP +++ +PT GLL GL+ FK+ IIS+ G FGL EA + G
Sbjct: 186 VILCTIAFGVFPFTGGVELLEVVFHSRPALVSITRPDEALIIGSALSLSSSAFVLKVLQEKNLQNARTGAASLGILLLQDLAVVPLLALIPVIESQLYGTGTVAGFDEL--GRTALVELGALGGVLAIGSLVLRRVFALVANTRSSEAFVAMTLLVALGMGEFTDKLGLSSTLGAFAAGALLAETNYKAQIEADIQPFRGLMLGLFFMVTGATVDPFVVMRDFPTFLGLLGGLILFKATIISALGYGLFGLEKEEAVRVG 443
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UF61_HEMAN) HSP 1 Score: 270 bits (691), Expect = 1.520e-81 Identity = 153/258 (59.30%), Postives = 185/258 (71.71%), Query Frame = 1
Query: 1 VLLCTLAFAAFPFLGGVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPTLLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG 774
V L T AF A PFLGG +LE +F + DLVSI+++DEA VIGAAL+LSSSAFVLKILQEKGQ + GRA LG+LLLQDIAVVPLLVLLPI+E Q TA + +GG+ +L G +L +F+ VAGARSSETF+ALCLL G T+ IGLS TLGAF AG LLAETNYRTQVEA+I PFRG+LLGLFF TTGA+VD LLV++WPT G+L+GL++ K+ I + FGLS +A +TG
Sbjct: 104 VALTTAAFTAVPFLGGSQILESVFGASQDLVSIKQLDEAFVIGAALALSSSAFVLKILQEKGQLGSPTGRAALGVLLLQDIAVVPLLVLLPIVELQNEVATAAEGASQDLGTLFGTAIGGVTALLAFGYIVLPKIFNAVAGARSSETFIALCLLTVAAAGTFTKTIGLSDTLGAFIAGILLAETNYRTQVEADIQPFRGILLGLFFVTTGASVDLPLLVQEWPTALGVLIGLISIKAAITGGLATNFGLSKGDAVRTG 361
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Match: K(+) (efflux antiporter 3, chloroplastic isoform X3 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E446FD) HSP 1 Score: 263 bits (672), Expect = 2.470e-80 Identity = 156/262 (59.54%), Postives = 193/262 (73.66%), Query Frame = 1
Query: 1 VLLCTLAFAAF--PFLG--GVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPTLLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG 774
V+LCTLAFAAF P G G VLE +FHS DLV+IR VDEA+VIGAALSLSSSAFVL++L EKG+ RFG A LGILLLQDIAVVPLLV+LPI+E+Q + ++ L +L K +GGLG + + G+FLLR +F+VVA +RSSE FVALCLL G LT+A+G S TLGAF AG LLAETN+RTQ+EA+I PFRGLLLGLFF TTG ++D LLV +WP V LL GL+ K++II++ GL+ E+ + G
Sbjct: 198 VVLCTLAFAAFELPPNGAIGTKVLEFLFHSRPDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPILESQNLGNESIWPTLAAESL---KALGGLGLLSLGGKFLLRRIFEVVAESRSSEAFVALCLLTVAGTSLLTQALGFSDTLGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLVREWPNVLTLLTGLIVIKTLIITAIGPRVGLTLQESIRIG 456
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Match: K(+) (efflux antiporter 3, chloroplastic isoform X1 n=2 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E3ADD8) HSP 1 Score: 263 bits (672), Expect = 3.680e-79 Identity = 156/262 (59.54%), Postives = 193/262 (73.66%), Query Frame = 1
Query: 1 VLLCTLAFAAF--PFLG--GVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPTLLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG 774
V+LCTLAFAAF P G G VLE +FHS DLV+IR VDEA+VIGAALSLSSSAFVL++L EKG+ RFG A LGILLLQDIAVVPLLV+LPI+E+Q + ++ L +L K +GGLG + + G+FLLR +F+VVA +RSSE FVALCLL G LT+A+G S TLGAF AG LLAETN+RTQ+EA+I PFRGLLLGLFF TTG ++D LLV +WP V LL GL+ K++II++ GL+ E+ + G
Sbjct: 198 VVLCTLAFAAFELPPNGAIGTKVLEFLFHSRPDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPILESQNLGNESIWPTLAAESL---KALGGLGLLSLGGKFLLRRIFEVVAESRSSEAFVALCLLTVAGTSLLTQALGFSDTLGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLVREWPNVLTLLTGLIVIKTLIITAIGPRVGLTLQESIRIG 456
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Match: RCK (N-terminal domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q873_VANPL) HSP 1 Score: 259 bits (661), Expect = 5.450e-79 Identity = 151/262 (57.63%), Postives = 191/262 (72.90%), Query Frame = 1
Query: 1 VLLCTLAFAAF--PFLG--GVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQGGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPTLLVEQWPTVTGLLLGLVTFKSIIISSASLGFGLSAPEAAKTG 774
V+LCT+AF AF P G G +LE FHS DLV+IR VDEA+VIGAALSLSSSAFVL++L EKG+ RFG A LGILLLQDIAVVPLLV+LPI+E+Q + +L L +L K +GGLG + + G++L+R +F+VVA +RSSE FVALCLL G LT+A+G S TLGAF AG +LAETN+RTQ+EA+I PFRGLLLGLFF TTG ++D LL+ +WP V LL GL+ K++IIS+ GL+ E+ + G
Sbjct: 184 VILCTIAFTAFELPPNGAVGTRILEFFFHSRPDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPILESQNLVNESLWPMLATESL---KALGGLGLLSLGGKYLIRRVFEVVADSRSSEAFVALCLLTVSGTSLLTQALGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLLREWPNVLSLLAGLLVIKTLIISAIGPRVGLTLQESVRIG 442
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8T7_9STRA) HSP 1 Score: 261 bits (668), Expect = 7.100e-79 Identity = 154/259 (59.46%), Postives = 189/259 (72.97%), Query Frame = 1
Query: 4 LLCTLAFAAFPFLGGVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSSAFVLKILQEKGQKAARFGRAVLGILLLQDIAVVPLLVLLPIIETQ-GGTDTALSEQLLLVALTVAKGVGGLGGILVAGRFLLRPLFDVVAGARSSETFVALCLLVALGMGQLTEAIGLSTTLGAFAAGTLLAETNYRTQVEANIAPFRGLLLGLFFTTTGATVDPTLLVEQWPTVTGLLLGLVTFKSIIISSASLG-FGLSAPEAAKTG 774
LLCT+AF FPF+ GVD+LEV+F SP DLV I R DEA++IG+ALSLSSSAFVLK+LQEKG + R G A LGILLLQD+AVVP+LVL+PIIE Q GT LS L A + A +G L +L G +LR +FD++A RS++ FVA+ LLV LGMG++T +G+S TLGAFAAG LLA+TNY+ QVEA+I PFRGLLLGLFF TTGA+VDPT++ Q PT LL GL+ FK+ IIS F L EA + G
Sbjct: 163 LLCTIAFGLFPFMRGVDLLEVVFRSPPDLVGITRPDEALIIGSALSLSSSAFVLKVLQEKGLQNTRTGAASLGILLLQDLAVVPILVLIPIIEAQLSGTGNVLSTAEL--AQSAAASLGALTLVLGGGSLILRRVFDMIASTRSTDAFVAMSLLVGLGMGKVTSMLGMSDTLGAFAAGALLADTNYKAQVEADIQPFRGLLLGLFFMTTGASVDPTVVAAQVPTFLALLGGLIVFKASIISLTGYRHFDLRKEEAIRVG 419 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10959.835.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10959.835.1 >prot_Ecto-sp9_F_contig10959.835.1 ID=prot_Ecto-sp9_F_contig10959.835.1|Name=mRNA_Ecto-sp9_F_contig10959.835.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=258bp VLLCTLAFAAFPFLGGVDVLEVIFHSPADLVSIRRVDEAVVIGAALSLSSback to top mRNA from alignment at Ecto-sp9_F_contig10959:583..4144- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10959.835.1 ID=mRNA_Ecto-sp9_F_contig10959.835.1|Name=mRNA_Ecto-sp9_F_contig10959.835.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3562bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10959:583..4144- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10959:583..4144- >mRNA_Ecto-sp9_F_contig10959.835.1 ID=mRNA_Ecto-sp9_F_contig10959.835.1|Name=mRNA_Ecto-sp9_F_contig10959.835.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1548bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10959:583..4144- (Ectocarpus species9 EcSCA_722f female)back to top |