mRNA_Ecto-sp9_F_contig10952.832.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig10952.832.1
Unique Name	mRNA_Ecto-sp9_F_contig10952.832.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Match: WD (repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN8_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 5.220e-44
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATPTSCSFNPRLENSFATGGEDGKVGV 228
            RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTG+ATPTSCSFNPRLENSFATGGEDGKV V
Sbjct:  870 RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGAATPTSCSFNPRLENSFATGGEDGKVRV 945

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BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS7_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.230e-44
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATPTSCSFNPRLENSFATGGEDGKVGV 228
            RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTG+ATPTSCSFNPRLENSFATGGEDGKV V
Sbjct: 1157 RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGAATPTSCSFNPRLENSFATGGEDGKVRV 1232

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BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sporisorium graminicola TaxID=280036 RepID=A0A4U7L1T4_9BASI)

HSP 1 Score: 77.0 bits (188), Expect = 1.060e-14
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 1

Query:    4 VMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATPTSCSFNPRLENSFATGGEDGKV 222
            V  GH GDV+DLSWS N FLLS   D + RLWHP R  C+  F  T SAT +S  F+P  +  F TGG DGK+
Sbjct:  554 VFAGHTGDVLDLSWSKNNFLLSCSSDKTARLWHPNRSDCLCTF--TTSATVSSVDFHPVDDRFFVTGGLDGKL 624

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BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Kalmanozyma brasiliensis (strain GHG001) TaxID=1365824 RepID=V5GKH9_KALBG)

HSP 1 Score: 76.6 bits (187), Expect = 1.390e-14
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1

Query:    4 VMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATPTSCSFNPRLENSFATGGEDGKV 222
            V  GH+GD++DLSWS N FLLS G D + +LWHP R  C+  F  T SA  +S  F+P  +  F TGG DGK+
Sbjct:  154 VFAGHSGDILDLSWSKNNFLLSCGSDKTAKLWHPNREDCLCTF--TTSAVVSSIDFHPTDDRFFVTGGLDGKL 224

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BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Match: WD40-repeat-containing (domain protein (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y9H8_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 1.910e-14
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1

Query:    1 RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATPTSCSFNPRLENSFATGGEDGKV 222
            R   GH GDV+DL+WS N FLLSA  D ++RLWH +R  C+++FP     T  S SF+P+ +  F +G  DG++
Sbjct:   80 RRWEGHKGDVMDLAWSKNNFLLSASMDRTVRLWHVSRAACLYVFPHPDFVT--SVSFHPKDDRCFLSGSIDGRM 151

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BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Match: Wd (repeat protein n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077R3E4_9BASI)

HSP 1 Score: 76.3 bits (186), Expect = 1.970e-14
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 1

Query:    1 RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATPTSCSFNPRLENSFATGGEDGKV 222
            R+  GH GDV+DLSWS N FLLS   D + +LWHP R GC+  F  + SAT +S  F+P  +  F TGG D K+
Sbjct:  570 RIFSGHTGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRTGCLCTF--STSATVSSVDFHPTDDRFFVTGGLDCKL 641

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BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Match: Uncharacterized (protein n=2 Tax=Sporisorium reilianum TaxID=72558 RepID=E6ZKT8_SPORE)

HSP 1 Score: 74.7 bits (182), Expect = 6.810e-14
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 1

Query:    4 VMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATPTSCSFNPRLENSFATGGEDGKV 222
            V  GH GDV+DLSWS N FLLS   D + RLWHP R  C+  F  T SA  +S  F+P  +  F TGG DGK+
Sbjct:  382 VFAGHTGDVLDLSWSKNNFLLSCSSDKTARLWHPNRSDCLCTF--TTSAIVSSVDFHPVDDRFFVTGGLDGKL 452

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BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3DRX1_9BASI)

HSP 1 Score: 74.7 bits (182), Expect = 6.860e-14
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 1

Query:    1 RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATPTSCSFNPRLENSFATGGEDGKV 222
            R+  GH+GDV+DLSWS N FLLS   D + +LWHP R  C+  F  + SA  +S  F+P  +  F TGG DGK+
Sbjct:  575 RIFAGHSGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRSDCLCTF--STSAIVSSIDFHPTDDRFFVTGGLDGKL 646

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BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Match: WD40 (repeat-containing protein n=3 Tax=Moesziomyces TaxID=63261 RepID=M9M194_PSEA3)

HSP 1 Score: 74.7 bits (182), Expect = 6.870e-14
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 1

Query:    1 RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATPTSCSFNPRLENSFATGGEDGKV 222
            RV  GH GDV+DLSWS N FLLS   D + +LWHP R  C+  F  + +A  +S  F+PR +  F TGG DGK+
Sbjct:  596 RVFAGHVGDVMDLSWSKNNFLLSCSSDKTAKLWHPNRAECLCTF--STAAIVSSVDFHPRDDRFFVTGGLDGKL 667

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3DT80_9BASI)

HSP 1 Score: 74.3 bits (181), Expect = 9.370e-14
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 1

Query:    1 RVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATPTSCSFNPRLENSFATGGEDGKV 222
            R+  GH GDV+DLSWS N FLLS   D + +LWHP R  C+  F  + SA  +S  F+P  +  F TGG DGK+
Sbjct:  575 RIFAGHGGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRSDCLCTF--STSAIVSSIDFHPTDDRFFVTGGLDGKL 646

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10952.832.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
WD	5.220e-44	97.37	repeat protein (Partial) (Fragment) n=1 Tax=Ectoca...	[more]
Uncharacterized	5.230e-44	97.37	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.060e-14	53.42	protein n=1 Tax=Sporisorium graminicola TaxID=2800...	[more]
Uncharacterized	1.390e-14	50.68	protein n=1 Tax=Kalmanozyma brasiliensis (strain G...	[more]
WD40-repeat-containing	1.910e-14	45.95	domain protein (Fragment) n=1 Tax=Piptocephalis cy...	[more]
Wd	1.970e-14	50.00	repeat protein n=1 Tax=Melanopsichium pennsylvanic...	[more]
Uncharacterized	6.810e-14	52.05	protein n=2 Tax=Sporisorium reilianum TaxID=72558 ...	[more]
Uncharacterized	6.860e-14	48.65	protein n=1 Tax=Ustilago trichophora TaxID=86804 R...	[more]
WD40	6.870e-14	50.00	repeat-containing protein n=3 Tax=Moesziomyces Tax...	[more]
Uncharacterized	9.370e-14	48.65	protein n=1 Tax=Ustilago trichophora TaxID=86804 R...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10952	contig	Ecto-sp9_F_contig10952:3846..4079 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	156.4
Seed ortholog evalue	5.4e-36
Seed eggNOG ortholog	2880.D8LMN8
Preferred name	WDR44
KEGG ko	ko:K20241
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005874,GO:0008150,GO:0010008,GO:0012505,GO:0015630,GO:0016020,GO:0017016,GO:0017137,GO:0019899,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0040012,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051020,GO:0051270,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:2000145
EggNOG free text desc.	Rab GTPase binding
EggNOG OGs	KOG0283@1,KOG0283@2759
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131
Hectar predicted targeting category	other localisation
Exons	1
Model size	234
Cds size	228
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928327.67923-UTR-Ecto-sp9_F_contig10952:3845..3851	1622928327.67923-UTR-Ecto-sp9_F_contig10952:3845..3851	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig10952 3846..3851 +
1692277834.279969-UTR-Ecto-sp9_F_contig10952:3845..3851	1692277834.279969-UTR-Ecto-sp9_F_contig10952:3845..3851	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig10952 3846..3851 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928327.6906447-CDS-Ecto-sp9_F_contig10952:3851..4079	1622928327.6906447-CDS-Ecto-sp9_F_contig10952:3851..4079	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10952 3852..4079 +
1692277834.2917569-CDS-Ecto-sp9_F_contig10952:3851..4079	1692277834.2917569-CDS-Ecto-sp9_F_contig10952:3851..4079	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10952 3852..4079 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10952.832.1	prot_Ecto-sp9_F_contig10952.832.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig10952 3852..4079 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig10952:3846..4079+
coding sequence from alignment at Ecto-sp9_F_contig10952:3846..4079+

protein sequence of mRNA_Ecto-sp9_F_contig10952.832.1

>prot_Ecto-sp9_F_contig10952.832.1 ID=prot_Ecto-sp9_F_contig10952.832.1|Name=mRNA_Ecto-sp9_F_contig10952.832.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=76bp
MRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGSATP
TSCSFNPRLENSFATGGEDGKVGVR*

mRNA from alignment at Ecto-sp9_F_contig10952:3846..4079+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig10952.832.1 ID=mRNA_Ecto-sp9_F_contig10952.832.1|Name=mRNA_Ecto-sp9_F_contig10952.832.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10952:3846..4079+ (Ectocarpus species9 EcSCA_722f female)
CGCGTCATGCGCGGCCACAACGGAGACGTGGTGGACCTCTCCTGGTCCCT
GAACGCCTTCCTCCTGTCGGCCGGCCGGGACGGCAGCCTCCGGCTGTGGC
ACCCGGCCCGCCTCGGGTGCGTGCACCTGTTCCCGCAGACGGGGTCGGCG
ACGCCGACGTCGTGCTCGTTCAACCCGCGGCTGGAGAACTCGTTCGCCAC
GGGCGGGGAGGATGGAAAGGTGGGTGTGCGGTAG

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10952:3846..4079+

>mRNA_Ecto-sp9_F_contig10952.832.1 ID=mRNA_Ecto-sp9_F_contig10952.832.1|Name=mRNA_Ecto-sp9_F_contig10952.832.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10952:3846..4079+ (Ectocarpus species9 EcSCA_722f female)
ATGCGCGGCCACAACGGAGACGTGGTGGACCTCTCCTGGTCCCTGAACGC
CTTCCTCCTGTCGGCCGGCCGGGACGGCAGCCTCCGGCTGTGGCACCCGG
CCCGCCTCGGGTGCGTGCACCTGTTCCCGCAGACGGGGTCGGCGACGCCG
ACGTCGTGCTCGTTCAACCCGCGGCTGGAGAACTCGTTCGCCACGGGCGG
GGAGGATGGAAAGGTGGGTGTGCGGTAGATGCGCGGCCACAACGGAGACG
TGGTGGACCTCTCCTGGTCCCTGAACGCCTTCCTCCTGTCGGCCGGCCGG
GACGGCAGCCTCCGGCTGTGGCACCCGGCCCGCCTCGGGTGCGTGCACCT
GTTCCCGCAGACGGGGTCGGCGACGCCGACGTCGTGCTCGTTCAACCCGC
GGCTGGAGAACTCGTTCGCCACGGGCGGGGAGGATGGAAAGGTGGGTGTG
CGGTAG