mRNA_Ecto-sp9_F_contig10947.827.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10947.827.1
Unique NamemRNA_Ecto-sp9_F_contig10947.827.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10947.827.1 vs.
Match: Telomerase (reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC2_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 9.900e-67
Identity = 114/142 (80.28%), Postives = 120/142 (84.51%), Query Frame = 2 
Query:  317 PIPHEHASQLSAKQCTALVYFLLVSCRLRATA----GNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVL*RLPNRCYMQARPRQSAPTMLNEGWY 730
            P+P  HAS L  +   A +   +V   LR++     GNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVL RLPNRCYMQARPRQSAPTMLNEG Y
Sbjct:  104 PLPR-HAS-LQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQARPRQSAPTMLNEGRY 243
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BLAST of mRNA_Ecto-sp9_F_contig10947.827.1 vs.
Match: Telomerase (reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G237_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 4.690e-51
Identity = 100/127 (78.74%), Postives = 106/127 (83.46%), Query Frame = 2 
Query:  317 PIPHEHASQLSAKQCTALVYFLLVSCRLRATA----GNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVL*RLPNRCYMQA 685
            P+P  HAS L  +   A +   +V   LR++     GNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVL RLPNRCYMQA
Sbjct:  104 PLPR-HAS-LQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQA 228
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BLAST of mRNA_Ecto-sp9_F_contig10947.827.1 vs.
Match: Telomerase (reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G7_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.480e-49
Identity = 99/127 (77.95%), Postives = 105/127 (82.68%), Query Frame = 2 
Query:  317 PIPHEHASQLSAKQCTALVYFLLVSCRLRATA----GNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVL*RLPNRCYMQA 685
            P+P  HAS L  +   A +   +V   LR++     GNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVL RLPNR YMQA
Sbjct:  104 PLPR-HAS-LQHRSSMADLLDRVVKSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRWYMQA 228
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BLAST of mRNA_Ecto-sp9_F_contig10947.827.1 vs.
Match: Probable (telomerase reverse transcriptase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S211_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 7.020e-8
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 2 
Query:  461 RNVLSLGCRVAGPQA-TSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVL*RLPNRCYMQ 682
            RNVL LG R   P +  +  + + G     PNTT ++++  PW+LLLSRIGD LM  LL   ++   LPN C++Q
Sbjct:  109 RNVLCLGFRKKRPSSRAAPSVGLFGTEAHHPNTTTDLLKGEPWQLLLSRIGDTLMLYLLMHTSLFLPLPNGCFLQ 183
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BLAST of mRNA_Ecto-sp9_F_contig10947.827.1 vs.
Match: Telomerase (reverse transcriptase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UNU5_CAPO3)

HSP 1 Score: 60.8 bits (146), Expect = 5.460e-7
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:  521 SVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVL*RLPNRCYMQ 682
            S+ GV   FPNTT+N +++ PWELLL+R+GD ++  LL   +V  RL N CYMQ
Sbjct:  228 SLYGVENYFPNTTLNYLKTLPWELLLARMGDSVVLHLLLSASVFVRLNNGCYMQ 281
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BLAST of mRNA_Ecto-sp9_F_contig10947.827.1 vs.
Match: Telomerase (reverse transcriptase n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507F327_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 1.040e-5
Identity = 29/80 (36.25%), Postives = 42/80 (52.50%), Query Frame = 2 
Query:  443 QGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVL*RLPNRCYMQ 682
            +G D   NVL+ G R    +  + +    G+   FPNT VN +++P WE+LL RIG   M  LL    +   L + CY+Q
Sbjct:   86 KGCDGAANVLTFGYRKLSGKGGNRVTGTHGIENFFPNTIVNYVKAPVWEMLLGRIGVRAMTDLLLNTTMFMTLQDGCYVQ 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10947.827.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Telomerase9.900e-6780.28reverse transcriptase n=1 Tax=Ectocarpus siliculos... [more]
Telomerase4.690e-5178.74reverse transcriptase n=1 Tax=Ectocarpus siliculos... [more]
Telomerase2.480e-4977.95reverse transcriptase n=1 Tax=Ectocarpus siliculos... [more]
Probable7.020e-842.67telomerase reverse transcriptase n=1 Tax=Coccomyxa... [more]
Telomerase5.460e-751.85reverse transcriptase n=1 Tax=Capsaspora owczarzak... [more]
Telomerase1.040e-536.25reverse transcriptase n=1 Tax=Spizellomyces sp. 'p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10947contigEcto-sp9_F_contig10947:935..2607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue3.8e-39
Seed eggNOG ortholog2880.D7FJC2
EggNOG OGs2E3KT@1,2SANA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size730
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10947.827.1prot_Ecto-sp9_F_contig10947.827.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10947 1010..2318 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928326.7157803-UTR-Ecto-sp9_F_contig10947:934..10091622928326.7157803-UTR-Ecto-sp9_F_contig10947:934..1009Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10947 935..1009 -
1692277833.8855917-UTR-Ecto-sp9_F_contig10947:934..10091692277833.8855917-UTR-Ecto-sp9_F_contig10947:934..1009Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10947 935..1009 -
1622928326.7551918-UTR-Ecto-sp9_F_contig10947:2318..26071622928326.7551918-UTR-Ecto-sp9_F_contig10947:2318..2607Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10947 2319..2607 -
1692277833.9206543-UTR-Ecto-sp9_F_contig10947:2318..26071692277833.9206543-UTR-Ecto-sp9_F_contig10947:2318..2607Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10947 2319..2607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928326.7294762-CDS-Ecto-sp9_F_contig10947:1009..12521622928326.7294762-CDS-Ecto-sp9_F_contig10947:1009..1252Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10947 1010..1252 -
1692277833.8989928-CDS-Ecto-sp9_F_contig10947:1009..12521692277833.8989928-CDS-Ecto-sp9_F_contig10947:1009..1252Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10947 1010..1252 -
1622928326.7423158-CDS-Ecto-sp9_F_contig10947:2195..23181622928326.7423158-CDS-Ecto-sp9_F_contig10947:2195..2318Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10947 2196..2318 -
1692277833.9074578-CDS-Ecto-sp9_F_contig10947:2195..23181692277833.9074578-CDS-Ecto-sp9_F_contig10947:2195..2318Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10947 2196..2318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10947.827.1

>prot_Ecto-sp9_F_contig10947.827.1 ID=prot_Ecto-sp9_F_contig10947.827.1|Name=mRNA_Ecto-sp9_F_contig10947.827.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=122bp
MREQTKLLYPIPHEHASQLSAKQCTALVYFLLVSCRLRATAGNSVGGYYA
AQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWE
LLLSRIGDDLMFALLRQHAVL*
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mRNA from alignment at Ecto-sp9_F_contig10947:935..2607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10947.827.1 ID=mRNA_Ecto-sp9_F_contig10947.827.1|Name=mRNA_Ecto-sp9_F_contig10947.827.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1673bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10947:935..2607- (Ectocarpus species9 EcSCA_722f female)
ATGCCATCGGTGCAAGGCGGACGGTGCCAGTCTCCTGGAAAGGGCCAAAG
TCCCGATGGACGATGGATGCTGAAGCTCATCTATCCGAACGCGGTCAGCC
TCGACTCGTATCTCGAGGTGTGGTTGCAAGCTGTCGCGGCGGCGGCAGCG
CCTGGCTCTGCGTCCCTGGCCGCAATCGAGGGCTGCGGCGGACCTGCCTC
GTACCTTAGCCGCCAGGGTGACGGCCCGGAGTACAAGAAGGTCCGTAGCT
CCATAGCTGGTGGGAGTGCTAGAGGCCGGAGCTTGATTCATGAGAGAGCA
AACGAAACTGTTGTACCCAATACCGCATGAGCATGCGTCGCAATTATCTG
CCAAGCAATGCACCGCGTTGGTGTATTTCTTGCTTGTCAGTTGCAGACTG
AGGGCTACTGCTGTACGCGGGCCCGACTTACCATTGCAAGCATATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGA
AAGCCGAATGAACCACCAAGAACCCCCTTCCCGATGACCTCAAGAAACAC
CCCCGCTACATGATACCCCGACCCGCCTGCTTCTTCTTCTATCTTTCGTC
GGCAGGGGAACAGTGTCGGCGGGTACTACGCCGCTCAGGGAGACGACCCG
CGCCGTAACGTCCTCTCCCTCGGATGCCGAGTAGCGGGACCGCAGGCGAC
GAGCGAGCTGCTGAGCGTGCAAGGGGTAGCATGCACGTTCCCCAACACTA
CGGTCAACGTCATCCGGTCGCCTCCGTGGGAGCTCCTGCTGTCCAGAATT
GGGGATGACTTGATGTTTGCTCTCCTGAGACAGCACGCCGTGCTGTAGCG
GCTGCCTAACCGCTGCTACATGCAGGCAAGGCCTCGACAGTCAGCACCAA
CGATGCTCAATGAAGGGTGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10947:935..2607-

>mRNA_Ecto-sp9_F_contig10947.827.1 ID=mRNA_Ecto-sp9_F_contig10947.827.1|Name=mRNA_Ecto-sp9_F_contig10947.827.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10947:935..2607- (Ectocarpus species9 EcSCA_722f female)
ATGAGAGAGCAAACGAAACTGTTGTACCCAATACCGCATGAGCATGCGTC
GCAATTATCTGCCAAGCAATGCACCGCGTTGGTGTATTTCTTGCTTGTCA
GTTGCAGACTGAGGGCTACTGCTATGAGAGAGCAAACGAAACTGTTGTAC
CCAATACCGCATGAGCATGCGTCGCAATTATCTGCCAAGCAATGCACCGC
GTTGGTGTATTTCTTGCTTGTCAGTTGCAGACTGAGGGCTACTGCTGGGA
ACAGTGTCGGCGGGTACTACGCCGCTCAGGGAGACGACCCGCGCCGTAAC
GTCCTCTCCCTCGGATGCCGAGTAGCGGGACCGCAGGCGACGAGCGAGCT
GCTGAGCGTGCAAGGGGTAGCATGCACGTTCCCCAACACTACGGTCAACG
TCATCCGGTCGCCTCCGTGGGAGCTCCTGCTGTCCAGAATTGGGGATGAC
TTGATGTTTGCTCTCCTGAGACAGCACGCCGTGCTGTAGGGGAACAGTGT
CGGCGGGTACTACGCCGCTCAGGGAGACGACCCGCGCCGTAACGTCCTCT
CCCTCGGATGCCGAGTAGCGGGACCGCAGGCGACGAGCGAGCTGCTGAGC
GTGCAAGGGGTAGCATGCACGTTCCCCAACACTACGGTCAACGTCATCCG
GTCGCCTCCGTGGGAGCTCCTGCTGTCCAGAATTGGGGATGACTTGATGT
TTGCTCTCCTGAGACAGCACGCCGTGCTGTAG
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