mRNA_Ecto-sp9_F_contig10946.826.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10946.826.1
Unique NamemRNA_Ecto-sp9_F_contig10946.826.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10946.826.1 vs.
Match: Cleavage (and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.470e-54
Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = 1 
Query:    1 HDLAHAGKTGDILKQVLRARGHYVALVSTMEDALAAQPKSGLKEGEEGEQGDGDXXXXXEAAGLLDRHTVKHKNWTVADPSLGGAPPLLVPRFELRVLALAPGAAS 318
            HDLAHAGKTGDILKQ+LRARGHYVALVSTMEDAL AQPKSGLKEGEEGEQGDGDXXXXXEAAGLLDRHTVKHKNWTVADPSLGGAPPLLVPRFELRVLALAPGA S
Sbjct: 1629 HDLAHAGKTGDILKQLLRARGHYVALVSTMEDALVAQPKSGLKEGEEGEQGDGDXXXXXEAAGLLDRHTVKHKNWTVADPSLGGAPPLLVPRFELRVLALAPGAVS 1734
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10946.826.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Cleavage1.470e-5497.17and polyadenylation specificity factor CG10110-PA ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10946contigEcto-sp9_F_contig10946:1030..3534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue2.3e-47
Seed eggNOG ortholog2880.D7G8W8
KEGG koko:K14401
KEGG Pathwayko03015,map03015
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG5161@1,KOG1896@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Exons3
Model size385
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10946.826.1prot_Ecto-sp9_F_contig10946.826.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10946 1030..3533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928326.457561-CDS-Ecto-sp9_F_contig10946:1029..11461622928326.457561-CDS-Ecto-sp9_F_contig10946:1029..1146Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10946 1030..1146 +
1692277833.840891-CDS-Ecto-sp9_F_contig10946:1029..11461692277833.840891-CDS-Ecto-sp9_F_contig10946:1029..1146Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10946 1030..1146 +
1622928326.469885-CDS-Ecto-sp9_F_contig10946:2355..24571622928326.469885-CDS-Ecto-sp9_F_contig10946:2355..2457Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10946 2356..2457 +
1692277833.8570142-CDS-Ecto-sp9_F_contig10946:2355..24571692277833.8570142-CDS-Ecto-sp9_F_contig10946:2355..2457Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10946 2356..2457 +
1622928326.4825044-CDS-Ecto-sp9_F_contig10946:3368..35331622928326.4825044-CDS-Ecto-sp9_F_contig10946:3368..3533Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10946 3369..3533 +
1692277833.867588-CDS-Ecto-sp9_F_contig10946:3368..35331692277833.867588-CDS-Ecto-sp9_F_contig10946:3368..3533Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10946 3369..3533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10946.826.1

>prot_Ecto-sp9_F_contig10946.826.1 ID=prot_Ecto-sp9_F_contig10946.826.1|Name=mRNA_Ecto-sp9_F_contig10946.826.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=128bp
HDLAHAGKTGDILKQVLRARGHYVALVSTMEDALAAQPKSGLKEGEEGEQ
GDGDDDEEEEAAGLLDRHTVKHKNWTVADPSLGGAPPLLVPRFELRVLAL
APGAASAAAATSSSSSARSPSSANDKSG
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mRNA from alignment at Ecto-sp9_F_contig10946:1030..3534+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10946.826.1 ID=mRNA_Ecto-sp9_F_contig10946.826.1|Name=mRNA_Ecto-sp9_F_contig10946.826.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2505bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10946:1030..3534+ (Ectocarpus species9 EcSCA_722f female)
CATGATCTGGCTCACGCGGGCAAGACCGGGGACATCCTGAAGCAGGTCTT
GAGGGCGAGGGGCCACTACGTGGCGCTTGTCTCGACCATGGAGGATGCCC
TTGCGGCACAGCCTAAGGTATGGGGGGGCCTGCTTAGTGCCGGCGAACGG
AATATTGCCAGATTATTTCGCGGGCTCAGACTGAGTACCGTAAGAGTCGG
AGAGATGGCACCCCCGTGTTAGCGTTTTTTTGTAGCGTATTTCTCCACAA
CTAGGAGGGTGCGAACACCAACCGATACCTCTCAGGAAAGCCCTCGACGA
GATTTTTCCAAAACTGCCCTTTTCGGCAGTGGTACAGTACCCCCCTGGTT
GTGGAGAAAAACGCTATACAAAAACGCTAACACGGGGGTGCCATCTCTCC
GACTCTTACGGTACCCGAGTGATTCGTAAGTACTTGGATAGTGTCGGTGT
CCGGAATAGTGCCGATCAATTCTCTGGGCACATACCGGCACTACACAGCC
CCCGCCTCCACTGTACTGGTATCTGTGTAGGTGTCTGGCGCGGAGTTTGG
TAGTGAGGAACGCGCGCTGTTGTTGACTTCTGTCGTAGGACCTGCGCCCT
CTCTCCCCTACGCCCTCTGTCCTACATGACAAAGCTCTTTCTCCCAGATA
CATGAGAGTTTGTTTGGTGTTTCGGAAAGGGGTGCTTGGTTGATTCACTT
CGATGTTATTTACTCTTCTCTTGAAGGCCGTACTGAGGTTCTGCACATTT
CGGCCGCCTTCGAAGGTTGACGAACGGTGTTCTTGAAGCACGCTGCCGCT
ACTTGCGACAATCGAACGAACTCTGTTCTTTTTTTCACACATGTTTTTTT
TCCTGGCGATCGTGTCCTGCGGTTTAAACATGTGACGCTTCCACGAGTGT
CCTCCTGGGCAGATGTGGCAAAAGAACAGAGAACATCAGTAGGGCTTGCG
GTGCGATTCGAAGCACGCACGATCAACGTGGCAAGGCTGCTGCGATGTCT
CTACTCACCATTTCACTCCGGTTGTATGCGAGATTTTTGTTTTTCTTGAT
CATCCCTTCATCTCACCTGTCGTTGTGTTGTTTATGTAGAGATGGCGAGA
ACCTCCTGCTGGCGCAGGAAGCCTCACCCAACTTCATTACTTACATTAAA
TTATCCTCGTGATAGAGGCAGAATACACAGAGATTTTGTACGTGCTGTTT
GTGCGGAAGTGACCTTTGAAAAGGTCCCATCTACCCAATCTCCGTCGAGG
ACGAACCCAAACTAATATTGAAGTATCAATAATCTTGTTGCGTTTTCTTT
TAATTGTCTCTCGTGGTATTCTGTAGTCGGGACTCAAGGAAGGAGAGGAA
GGGGAGCAGGGGGACGGAGATGATGACGAGGAGGAAGAGGCGGCGGGATT
GCTGGACCGGCATACCGTCAAGCACAAGGTAGGTAACTTGCTCGATCAAT
GTGGAAGTAGATGTAATGGAACGGTATGATGGTGAGAGTAGCGGCATGTA
ATAACAACATGGAAACACATGTTGGAATGAAAAGGCATGGTATGTGTGTA
ACGGCTTATACTAATACCATGGAAATATGGAATGAAACGGCGGGACAACA
ACACACGAACCGGAACTTTCCGCACGATGTAACCGTCAAACGCGAGACAT
GGTAGAAGGGAGCACTCACCGGAAGCGCAAGAGGGATGGTGGACAAGCAG
TAGCATAATACTGCCAAGCACGAAAGATGGAACGTACCGTGTGTGCCATA
TGGCTAACCCAAAGTGTGGGATTCTCGTTGACAGTAGTGAGATGCTCTTG
ACGAGCGACGTAGGCGAAACGATGTGCCTTCCTTGGCTTCTGTTGTTCCT
TTGCTTGTCTAGGCTAACCAAGTACCACAGCAGTGGTCGTGGTCGTGACC
ACAGCAATGTGCGACCACTCACCAGAGAACAGGCATTGGACATATTGCGT
TCGTGCAGTATTCAGAGAGCACCAATAGCTTTAGCACCAATAGCTTTGGC
GCCGCTTGTAGAAGAGGTTACTGGAGACTTGATTCGGGTTTAAGAGAAGA
ATGCTGCACGCAATAGTCGATGGTCCAAACGAACGGCCCAATATTTGAAT
ATTGCTAAACATCATCGTGGGGGGAGCCGCAGAAAGGGAAATAGCCAAAC
GAGTGTACCCGCCTGCCGTGTAGGGACGGAAGCAAGGTCTTTAGTCTGAG
GGTTAGGAGTATGCACGATATCGCGTAGCCCCCTTTGGCCTTGCCCCCAA
AGTACCCCGCCCCGAACGAAACTCCCGGGCAACGCTCAACGACTTAGGCA
AGCAACAACCCACTTAACCCTGATCTCCACCGCTGGCAGAACTGGACGGT
GGCCGACCCCAGCCTAGGTGGCGCGCCCCCGCTCCTCGTCCCGAGATTCG
AGCTGCGCGTGCTAGCTCTAGCGCCCGGAGCGGCATCGGCAGCAGCAGCG
ACATCGTCATCATCGTCAGCAAGAAGCCCTTCCTCTGCTAACGACAAGAG
TGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10946:1030..3534+

>mRNA_Ecto-sp9_F_contig10946.826.1 ID=mRNA_Ecto-sp9_F_contig10946.826.1|Name=mRNA_Ecto-sp9_F_contig10946.826.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10946:1030..3534+ (Ectocarpus species9 EcSCA_722f female)
CATGATCTGGCTCACGCGGGCAAGACCGGGGACATCCTGAAGCAGGTCTT
GAGGGCGAGGGGCCACTACGTGGCGCTTGTCTCGACCATGGAGGATGCCC
TTGCGGCACAGCCTAAGCATGATCTGGCTCACGCGGGCAAGACCGGGGAC
ATCCTGAAGCAGGTCTTGAGGGCGAGGGGCCACTACGTGGCGCTTGTCTC
GACCATGGAGGATGCCCTTGCGGCACAGCCTAAGTCGGGACTCAAGGAAG
GAGAGGAAGGGGAGCAGGGGGACGGAGATGATGACGAGGAGGAAGAGGCG
GCGGGATTGCTGGACCGGCATACCGTCAAGCACAAGTCGGGACTCAAGGA
AGGAGAGGAAGGGGAGCAGGGGGACGGAGATGATGACGAGGAGGAAGAGG
CGGCGGGATTGCTGGACCGGCATACCGTCAAGCACAAGAACTGGACGGTG
GCCGACCCCAGCCTAGGTGGCGCGCCCCCGCTCCTCGTCCCGAGATTCGA
GCTGCGCGTGCTAGCTCTAGCGCCCGGAGCGGCATCGGCAGCAGCAGCGA
CATCGTCATCATCGTCAGCAAGAAGCCCTTCCTCTGCTAACGACAAGAGT
GGGAACTGGACGGTGGCCGACCCCAGCCTAGGTGGCGCGCCCCCGCTCCT
CGTCCCGAGATTCGAGCTGCGCGTGCTAGCTCTAGCGCCCGGAGCGGCAT
CGGCAGCAGCAGCGACATCGTCATCATCGTCAGCAAGAAGCCCTTCCTCT
GCTAACGACAAGAGTGGG
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