mRNA_Ecto-sp9_F_contig10929.814.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Match: FAD (dependent oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN35_ECTSI) HSP 1 Score: 306 bits (783), Expect = 2.630e-101 Identity = 171/181 (94.48%), Postives = 174/181 (96.13%), Query Frame = 1
Query: 85 AGQVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRTYWPGIEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXX--HRQYPPVPRRGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGMLEGRRRQQQQ 621
A VRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIR YWPG+EESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXX HRQYPPVPR GASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGMLEGRRR++QQ
Sbjct: 19 AFSVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRRYWPGVEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXDEEHRQYPPVPRPGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGMLEGRRRRRQQ 199
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Match: DAO (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE6_9PHAE) HSP 1 Score: 308 bits (790), Expect = 6.340e-95 Identity = 176/195 (90.26%), Postives = 182/195 (93.33%), Query Frame = 1
Query: 52 AGLGVHATLDLAGQVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRTYWPGIEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXXHRQ-YPPVPRRGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGMLEGRRRQQQQ*APL 633
AGLGVHATLDLAGQVRFGPDVEWLP+PTTQPHQHR+H GVSREAFE+DGFDYGVDPSRSVDFCNAIR YWPG+EESKLVPDYSGIRPKLVGPDGPSVV HXXXXXXXXXXXXXXXXXXXXXX +PPVPRRG SHFRG ADFVIQGRD HGVDGLVN+MGIESPGLTASLAIADHVVGMLE RRRQQQ APL
Sbjct: 216 AGLGVHATLDLAGQVRFGPDVEWLPRPTTQPHQHRQHHGVSREAFEKDGFDYGVDPSRSVDFCNAIRRYWPGVEESKLVPDYSGIRPKLVGPDGPSVVVHXXXXXXXXXXXXXXXXXXXXXXXXXXHPPVPRRGTSHFRGVADFVIQGRDVHGVDGLVNVMGIESPGLTASLAIADHVVGMLEMRRRQQQG-APL 409
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Match: NAD(P)/FAD-dependent (oxidoreductase n=1 Tax=Marinobacter sp. CAU 1620 TaxID=2856822 RepID=UPI001E37DFEC) HSP 1 Score: 152 bits (385), Expect = 1.120e-39 Identity = 88/198 (44.44%), Postives = 104/198 (52.53%), Query Frame = 1
Query: 1 GRPPFRHLVYPLPEPNQAGLGVHATLDLAGQVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRTYWPGIEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXXHRQYPPVPRRGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGML 594
GR PFR+L+YP+PEP GLGVH TLDLAGQ RFGPDVEW+ D DY VDP R F ++IR +WPG++ES+L P Y+GIRPKL GPDG G +DF I+G +EHGVDG+VNL GIESPGLT+ LAIAD V L
Sbjct: 221 GRHPFRNLIYPVPEPG--GLGVHLTLDLAGQARFGPDVEWI-----------------------DNEDYSVDPGRVARFTDSIRRWWPGLDESRLQPAYAGIRPKLTGPDG--------------------------------------------GVSDFRIEGPEEHGVDGVVNLFGIESPGLTSCLAIADLVTAKL 349
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Match: NAD(P)/FAD-dependent (oxidoreductase n=2 Tax=Azospirillum TaxID=191 RepID=A0A3S0KWB7_9PROT) HSP 1 Score: 152 bits (385), Expect = 2.150e-39 Identity = 87/197 (44.16%), Postives = 101/197 (51.27%), Query Frame = 1
Query: 1 GRPPFRHLVYPLPEPNQAGLGVHATLDLAGQVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRTYWPGIEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXXHRQYPPVPRRGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGM 591
GR PF LVYP+P GLGVH TLDLAGQ RFGPDVEWL P T P DG DY VDP+R+ F +++R YWPG+ + LVP YSG+RPKL GP P DF++QG + HG+ GLVNL GIESPGLT+ LAIAD V GM
Sbjct: 238 GRSPFARLVYPVPV--DGGLGVHLTLDLAGQARFGPDVEWLGNPDTGP--------------TGDGIDYAVDPARAESFYDSVRAYWPGLPDGALVPAYSGVRPKLSGPGQPQ--------------------------------------------RDFLLQGPETHGIPGLVNLFGIESPGLTSCLAIADAVAGM 374
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Match: FAD-dependent (oxidoreductase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4ATP7_9PROT) HSP 1 Score: 152 bits (383), Expect = 3.190e-39 Identity = 88/199 (44.22%), Postives = 103/199 (51.76%), Query Frame = 1
Query: 1 GRPPFRHLVYPLPEPNQAGLGVHATLDLAGQVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRTYWPGIEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXXHRQYPPVPRRGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGMLE 597
GR PF+HLVYP+PEP GLGVH TLDLAGQ RFGPDVEW+ D +Y VDP+R+ F +IR YWPG+ + L P Y GIRPK+ GP P AADF+IQG EHG+ GLVNL GIESPGLTASLA+AD VV ++E
Sbjct: 237 GRAPFKHLVYPVPEPG--GLGVHLTLDLAGQARFGPDVEWI-----------------------DRIEYSVDPARAERFYGSIRRYWPGLPDGALSPAYCGIRPKISGPGEP--------------------------------------------AADFLIQGPKEHGIPGLVNLFGIESPGLTASLALADDVVNLIE 366
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Match: FAD-dependent (oxidoreductase n=1 Tax=Burkholderia sp. Ac-20379 TaxID=2703900 RepID=UPI0019825B71) HSP 1 Score: 147 bits (372), Expect = 3.310e-39 Identity = 90/199 (45.23%), Postives = 99/199 (49.75%), Query Frame = 1
Query: 1 GRPPFRHLVYPLPEPNQAGLGVHATLDLAGQVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRTYWPGIEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXXHRQYPPVPRRGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGMLE 597
GR PF L+YP+PEP GLGVH TLDLA Q RFGPDVEW+ D DY VDP R+ F AIR YWP + +S L P YSGIRPKL PDG G+ADF+IQ EHGV GLVNL GIESPGLTASLAIAD V+ LE
Sbjct: 89 GRAPFSRLIYPVPEPG--GLGVHLTLDLANQARFGPDVEWI-----------------------DTIDYRVDPGRAERFYQAIRRYWPALPDSALQPAYSGIRPKLDAPDG--------------------------------------------GSADFMIQSAREHGVPGLVNLYGIESPGLTASLAIADEVLARLE 218
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Match: NAD(P)/FAD-dependent (oxidoreductase n=1 Tax=Gordonia jinghuaiqii TaxID=2758710 RepID=A0A7D7LP07_9ACTN) HSP 1 Score: 152 bits (383), Expect = 3.940e-39 Identity = 89/200 (44.50%), Postives = 102/200 (51.00%), Query Frame = 1
Query: 4 RPPFRHLVYPLPEPNQAGLGVHATLDLAGQVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRTYWPGIEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXXHRQYPPVPRRGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGMLEGR 603
R PFRHL+YP+P GLGVH T+DLAG RFGPDVEWL +D DY VD R+ F +AIRTYWPG+ LVP Y+G+RPK GP P AADFV+QG HGVDGLVNL GIESPG+T+SLAIADHVVG+L R
Sbjct: 235 RAPFRHLIYPVPV--DGGLGVHFTMDLAGAARFGPDVEWLDAERLDDQA-------------DDTLDYSVDIGRTDAFEHAIRTYWPGMPRGALVPAYAGVRPKTSGPGEP--------------------------------------------AADFVVQGPSSHGVDGLVNLFGIESPGITSSLAIADHVVGLLSTR 375
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Match: NAD(P)/FAD-dependent (oxidoreductase n=1 Tax=Piscinibacter defluvii TaxID=1796922 RepID=UPI000FDEAAD9) HSP 1 Score: 151 bits (381), Expect = 7.540e-39 Identity = 89/198 (44.95%), Postives = 102/198 (51.52%), Query Frame = 1
Query: 1 GRPPFRHLVYPLPEPNQAGLGVHATLDLAGQVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRTYWPGIEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXXHRQYPPVPRRGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGML 594
GR PF L+YP+PE AGLGVH TLDLAGQ RFGPDV+WLP A + D DY VDP+R F IR YWP + + L P YSG+RPKL GP+ P AADFV+QG DEHG+ GL+NL GIESPGLTASLAIAD V+ L
Sbjct: 236 GRAPFSRLIYPVPE--AAGLGVHLTLDLAGQARFGPDVQWLP------------------AGDPDAIDYRVDPARGEAFYAEIRRYWPALPDGALQPAYSGVRPKLGGPEAP--------------------------------------------AADFVLQGPDEHGIAGLMNLFGIESPGLTASLAIADEVLHRL 369
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Match: FAD-dependent (oxidoreductase n=1 Tax=Pseudomonas stutzeri TaxID=316 RepID=A0A2N8T4D7_PSEST) HSP 1 Score: 150 bits (379), Expect = 1.270e-38 Identity = 92/200 (46.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query: 1 GRPPFRHLVYPLPEPNQAGLGVHATLDLAGQVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRTYWPGIEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXXHRQYPPVPRRGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGMLEG 600
GR PF HLVYPLPEP GLGVH TLDLAGQ RFGPDVEW+ DG DY V+P R+ F AIR YWPG+ + L P YSGIRPK+ GP P AADF I G +HGV GLVNL GIESPGLTA LAIAD V LEG
Sbjct: 237 GRTPFTHLVYPLPEPG--GLGVHLTLDLAGQARFGPDVEWV-----------------------DGLDYQVEPQRAEGFYAAIRRYWPGLSDGALQPAYSGIRPKISGPGEP--------------------------------------------AADFRIDGPAQHGVPGLVNLFGIESPGLTACLAIADEVCRRLEG 367
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Match: NAD(P)/FAD-dependent (oxidoreductase n=3 Tax=Candidatus Accumulibacter phosphatis TaxID=327160 RepID=A0A369XNI4_9PROT) HSP 1 Score: 150 bits (380), Expect = 1.350e-38 Identity = 91/197 (46.19%), Postives = 101/197 (51.27%), Query Frame = 1
Query: 1 GRPPFRHLVYPLPEPNQAGLGVHATLDLAGQVRFGPDVEWLPKPTTQPHQHRRHLGVSREAFEEDGFDYGVDPSRSVDFCNAIRTYWPGIEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXXHRQYPPVPRRGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGM 591
GR PF LVYPLPE GLGVH TLDL GQ RFGPDVEWLP+PT P Q L DY VDP R+ F IR YWPG+ + L P Y+GIRPK+VGP P A DF+IQG +HG+ GLVNL GIESPGLTA LAIA H VG+
Sbjct: 239 GRAPFSRLVYPLPE--AGGLGVHLTLDLGGQARFGPDVEWLPQPT--PGQAIGEL------------DYRVDPGRADVFYAEIRRYWPGLPDKALTPAYAGIRPKIVGPGAP--------------------------------------------AGDFLIQGPAQHGIPGLVNLFGIESPGLTACLAIAAHAVGV 375 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10929.814.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10929.814.1 >prot_Ecto-sp9_F_contig10929.814.1 ID=prot_Ecto-sp9_F_contig10929.814.1|Name=mRNA_Ecto-sp9_F_contig10929.814.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=208bp GRPPFRHLVYPLPEPNQAGLGVHATLDLAGQVRFGPDVEWLPKPTTQPHQback to top mRNA from alignment at Ecto-sp9_F_contig10929:1190..3557- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10929.814.1 ID=mRNA_Ecto-sp9_F_contig10929.814.1|Name=mRNA_Ecto-sp9_F_contig10929.814.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2368bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10929:1190..3557- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10929:1190..3557- >mRNA_Ecto-sp9_F_contig10929.814.1 ID=mRNA_Ecto-sp9_F_contig10929.814.1|Name=mRNA_Ecto-sp9_F_contig10929.814.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1248bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10929:1190..3557- (Ectocarpus species9 EcSCA_722f female)back to top |