mRNA_Ecto-sp9_F_contig10920.809.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10920.809.1
Unique NamemRNA_Ecto-sp9_F_contig10920.809.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10920.809.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK5_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 1.300e-101
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 1 
Query:    1 MVLQQYLDSLYKQEAVAGNQDFSGHGGVRRPSVPPVANGGEQANGASILGQQPLGGRDRMLLRELEGFPEMHAYAFLVNDVLGTNIPNNRQAWDTYSSASSSMNADGMNGNESDNSDFDESSSVGHEQRVKLSILLQLVKSMAASKPRIVVIDDAQFLDKDSWTLALQIATC 516
            MVLQQYLDSLYKQE VAGNQDFSGHGGVRRPSVPPVA+GGEQANGASILGQQPLGGRDRMLLRELEGFPEMHAYAFLVNDVLGTNIPNNRQ WDTYSSASSSMNADGMNGNESD+SDFDES+SVGHEQRVKLSILLQLVKSMAASKPRIVVIDDAQFLDKDSWTLALQIATC
Sbjct:  921 MVLQQYLDSLYKQEVVAGNQDFSGHGGVRRPSVPPVASGGEQANGASILGQQPLGGRDRMLLRELEGFPEMHAYAFLVNDVLGTNIPNNRQTWDTYSSASSSMNADGMNGNESDSSDFDESTSVGHEQRVKLSILLQLVKSMAASKPRIVVIDDAQFLDKDSWTLALQIATC 1092
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BLAST of mRNA_Ecto-sp9_F_contig10920.809.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ45_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 1.710e-49
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:  307 MNADGMNGNESDNSDFDESSSVGHEQRVKLSILLQLVKSMAASKPRIVVIDDAQFLDKDSWTLALQIATCGPMGTPLPLMLILSFRPLFHYRAIFSHIAPDYK 615
            MNADGMNG+ESD+SDFD+ SSVGHEQRVKLSILLQLVKSMAASK RIVVIDDAQFLDKDSWTLALQIATCGPMGTPLPLMLILSFRPL HY A+F+HI+PDY+
Sbjct:    1 MNADGMNGSESDSSDFDDGSSVGHEQRVKLSILLQLVKSMAASKHRIVVIDDAQFLDKDSWTLALQIATCGPMGTPLPLMLILSFRPLRHYGAMFAHISPDYE 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10920.809.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.300e-10197.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.710e-4989.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10920contigEcto-sp9_F_contig10920:231..2952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.1
Seed ortholog evalue2.4e-86
Seed eggNOG ortholog2880.D7FKK5
KEGG rclassRC00295
KEGG koko:K11265
KEGG ReactionR00089,R00434
KEGG Pathwayko00230,ko04024,ko04371,ko04713,ko04714,map00230,map04024,map04371,map04713,map04714
EggNOG free text desc.Adenylate cyclase
EggNOG OGs2QPPT@2759,COG2114@1
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-12_001750.1
EC4.6.1.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size616
Cds size615
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10920.809.1prot_Ecto-sp9_F_contig10920.809.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10920 231..2952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928324.0583773-CDS-Ecto-sp9_F_contig10920:230..3311622928324.0583773-CDS-Ecto-sp9_F_contig10920:230..331Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 231..331 -
1692277832.7410703-CDS-Ecto-sp9_F_contig10920:230..3311692277832.7410703-CDS-Ecto-sp9_F_contig10920:230..331Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 231..331 -
1622928324.0709126-CDS-Ecto-sp9_F_contig10920:680..7471622928324.0709126-CDS-Ecto-sp9_F_contig10920:680..747Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 681..747 -
1692277832.754859-CDS-Ecto-sp9_F_contig10920:680..7471692277832.754859-CDS-Ecto-sp9_F_contig10920:680..747Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 681..747 -
1622928324.0839024-CDS-Ecto-sp9_F_contig10920:1215..13691622928324.0839024-CDS-Ecto-sp9_F_contig10920:1215..1369Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 1216..1369 -
1692277832.765541-CDS-Ecto-sp9_F_contig10920:1215..13691692277832.765541-CDS-Ecto-sp9_F_contig10920:1215..1369Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 1216..1369 -
1622928324.0962045-CDS-Ecto-sp9_F_contig10920:1746..18621622928324.0962045-CDS-Ecto-sp9_F_contig10920:1746..1862Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 1747..1862 -
1692277832.7745655-CDS-Ecto-sp9_F_contig10920:1746..18621692277832.7745655-CDS-Ecto-sp9_F_contig10920:1746..1862Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 1747..1862 -
1622928324.106556-CDS-Ecto-sp9_F_contig10920:2253..23881622928324.106556-CDS-Ecto-sp9_F_contig10920:2253..2388Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 2254..2388 -
1692277832.7832792-CDS-Ecto-sp9_F_contig10920:2253..23881692277832.7832792-CDS-Ecto-sp9_F_contig10920:2253..2388Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 2254..2388 -
1622928324.117374-CDS-Ecto-sp9_F_contig10920:2910..29521622928324.117374-CDS-Ecto-sp9_F_contig10920:2910..2952Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 2911..2952 -
1692277832.7997465-CDS-Ecto-sp9_F_contig10920:2910..29521692277832.7997465-CDS-Ecto-sp9_F_contig10920:2910..2952Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10920 2911..2952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10920.809.1

>prot_Ecto-sp9_F_contig10920.809.1 ID=prot_Ecto-sp9_F_contig10920.809.1|Name=mRNA_Ecto-sp9_F_contig10920.809.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=205bp
MVLQQYLDSLYKQEAVAGNQDFSGHGGVRRPSVPPVANGGEQANGASILG
QQPLGGRDRMLLRELEGFPEMHAYAFLVNDVLGTNIPNNRQAWDTYSSAS
SSMNADGMNGNESDNSDFDESSSVGHEQRVKLSILLQLVKSMAASKPRIV
VIDDAQFLDKDSWTLALQIATCGPMGTPLPLMLILSFRPLFHYRAIFSHI
APDYK
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mRNA from alignment at Ecto-sp9_F_contig10920:231..2952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10920.809.1 ID=mRNA_Ecto-sp9_F_contig10920.809.1|Name=mRNA_Ecto-sp9_F_contig10920.809.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2722bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10920:231..2952- (Ectocarpus species9 EcSCA_722f female)
ATGGTGCTGCAGCAGTACCTAGACTCGCTCTACAAGCAGGAGGTGGGGTT
TTGGTTTAGCGCGGGGGGGTTACCGGGGTTCTGGTTGTTGATACGTTTGG
AGGGAGTGCTTGTTGTGCCATGTCCGGGTCGATGTAGCACGTGTGTCGGA
CCGCTTTTTTATGGCGTGGCAGATGTAGGTCAGCGTCTGTGCTGAGGGGG
GTAGTGCGACGGCAGCAAGTAGGGAATGCGGGTTACGGTGTCCGCTAACC
ATGTTTGTTTGCCAACTTCGAGACGTAAGAGAGGGTGAGAGCTTCTCCGC
GGGAGAATCGCCGCGGCAGTCCGTTGTTTTAAGAGACGATTGCTGTTGTC
TGTCTATGCGACGATTAATTGCACTGAAGTCGAGTCGGTAGTGGGTACAC
ATGGTCAAGCACTTATCGGTGTACTCATGCGCCTGTAGACGAACCACTGT
TATAGTTTCCCTTGCCACGCTGCCGGAGGAACGACCTAGCAATGGTTATC
TCCCCCCCCCCCCCCCCTGTCGGGCCACGTTTGCGTCCCCCCCCCCCCCC
CGGACCCCACATAGGCTGTAGCAGGAAACCAAGACTTTAGCGGCCACGGC
GGTGTGCGGCGGCCCTCTGTCCCCCCGGTCGCTAACGGTGGCGAGCAGGC
CAACGGGGCTAGCATTCTGGGGCAACAGCCGCTGGGCGGCAGAGATCGGG
TGAGGGGATACATGGCCGTGAACGTGGGGAAGGGGGGGGGGGGGGAGCAG
GGGTTTTCTATGTGTTTTGGATACCGTGCGCTCACTGCGGGATCCGCGAA
AGAACGGAGGGAGGGCAGCTCCATTGTTCGCCGTTTGTTTTTCGTCGGTG
GCGTGAACACCGCTCGACTACGCGTGTTGTGTCTACTTCTGCTGCTGTTG
ATGTTGCGGCGTCTGTTCTGCATTTTTGTTTTTGTGTTTGAGTGATGGTC
TCGAAGTGACCACACCCTACGACACCTCTCTAACCTGCATCTGCTGCTGC
ATCTGCTGCATCTGCTGCATCTGCTGCTGCTGCTGCTGCTGCTTGTTCGG
TGTTTGATCCTGCTTGCTCTGCTTCTCCCCGCGTGCCAAGATGCTCCTGA
GAGAGCTGGAGGGTTTCCCTGAGATGCATGCGTACGCCTTCCTCGTTAAC
GACGTCCTGGGCACCAACATCCCCAACAACAGGCAGGCCTGGGACACGTA
CTCGAGGCAAGCTCACCCATAGAGTTTGACAGAACACTCGGGAAACCATA
AGCAGAAAGAGAAGAAGAGAGGAACGCCCTTGATTTTGTCTTTTTTTTTC
CGAGACTGACTGCTGAGGTTGAAACTCTCCGTACGCGTGTTGGTGCGGTG
ACCGTGGCATGAAACGAAACGGTACATTACCCGCCGCTCACGTAAACGCA
CATTGATGTGGAGACAGCAACAGCAACAACAACAACAGCAGCATGCCCAC
CCCGTGGCTTTGCAGCACCTTCTCATTCACATTCAGCTAAAAATGAAATG
CGAATGGCAAGTGACAACCAAAGAACTCGCTTGTTGTTGTATTTGTACCC
CCCCCCCCCCGCCGGCCTTCTGTTGTGTTGCAGTGCCTCCTCATCCATGA
ACGCTGACGGGATGAACGGCAACGAGTCGGACAACTCGGACTTCGACGAA
AGCTCCAGCGTGGGGCACGAGCAGAGGGTCAAGCTGTCGATCCTGCTGCA
GCTGGTCAAGAGCATGGCCGCCAGCAAGCCCCGCATCGTGAGTTGGCCTA
CTTCCTTTGTTTACCAGCAGAGAGAGCCTTGTTTCGGTCGTTTTTTCTTT
TCGGTCAGCATTTTCATTGTGCGTTCATGAAGTGCTGGTGCGTGTAAAAA
CTGCGCACGGTGGGGATTGGGAAAACTAGAGCAGGTCGTCAGGTGCTGAG
TAGGAGGGACAGGGGGGAGAGGGCTCTCGTCCTCGTTTGTATCCTGCTGA
CGGTTCGGGTTCGGGCTGTTCGATGATGACTGCTGCGGTTGCTACTGCGG
CATTGCTGTCGCCGTCGCTGTTGTTGGCGCTGTCAATGTCAGTGTCAATG
ATATTGATGATGATGACCGTTGTTGTTGTTGTTGTTGTTGTTGTTGCCGT
TGCTGCTGGTATGGTGTCTGTTGGCGATGTTGATACTGTTGATGCTGTCA
ATGTCAATTGATGAGGAGGATATCGATGTCGATGTCGACTTTGCTTTCTG
TGCAGGTTGTGATCGACGATGCGCAATTCCTGGACAAGGACAGCTGGACG
CTTGCCCTGCAGATCGCAACCTGTGAGCAATCAAACCAACGAGTTGATGA
CGCGGTATAATAGCAGCCTCCCTGCTCCAATAGACTAAGTGCAATATCAG
CCTTTCTCTGCCCCAATAAATAGCCTTAAGTTATAGAACCACCCTGTTCT
CTGCTCCAATAGACTACAATTATAGATTATAGACTAGAGCAGTGTTGGGC
TCTTAACAGCCATCGCTTCTTTGTGCAGGAACGTGCCTTGTACACAACGC
CCCCGCACCCTCCCCTATGTTGCTGACTTTGCATCTACCCTGTTCGCTGA
TCGCCGTCGCCCTTGGGTGACGATGACGTCATCGTTCGTTGGTGGTGACG
TCACTGCCTTTCCCGAAACAGGCGGGCCCATGGGGACTCCGTTGCCCCTG
ATGCTCATCCTCTCCTTCCGGCCTCTGTTTCACTACCGAGCTATCTTCTC
ACATATCGCCCCTGATTACAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10920:231..2952-

>mRNA_Ecto-sp9_F_contig10920.809.1 ID=mRNA_Ecto-sp9_F_contig10920.809.1|Name=mRNA_Ecto-sp9_F_contig10920.809.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1230bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10920:231..2952- (Ectocarpus species9 EcSCA_722f female)
ATGGTGCTGCAGCAGTACCTAGACTCGCTCTACAAGCAGGAGATGGTGCT
GCAGCAGTACCTAGACTCGCTCTACAAGCAGGAGGCTGTAGCAGGAAACC
AAGACTTTAGCGGCCACGGCGGTGTGCGGCGGCCCTCTGTCCCCCCGGTC
GCTAACGGTGGCGAGCAGGCCAACGGGGCTAGCATTCTGGGGCAACAGCC
GCTGGGCGGCAGAGATCGGGCTGTAGCAGGAAACCAAGACTTTAGCGGCC
ACGGCGGTGTGCGGCGGCCCTCTGTCCCCCCGGTCGCTAACGGTGGCGAG
CAGGCCAACGGGGCTAGCATTCTGGGGCAACAGCCGCTGGGCGGCAGAGA
TCGGATGCTCCTGAGAGAGCTGGAGGGTTTCCCTGAGATGCATGCGTACG
CCTTCCTCGTTAACGACGTCCTGGGCACCAACATCCCCAACAACAGGCAG
GCCTGGGACACGTACTCGAGATGCTCCTGAGAGAGCTGGAGGGTTTCCCT
GAGATGCATGCGTACGCCTTCCTCGTTAACGACGTCCTGGGCACCAACAT
CCCCAACAACAGGCAGGCCTGGGACACGTACTCGAGTGCCTCCTCATCCA
TGAACGCTGACGGGATGAACGGCAACGAGTCGGACAACTCGGACTTCGAC
GAAAGCTCCAGCGTGGGGCACGAGCAGAGGGTCAAGCTGTCGATCCTGCT
GCAGCTGGTCAAGAGCATGGCCGCCAGCAAGCCCCGCATCTGCCTCCTCA
TCCATGAACGCTGACGGGATGAACGGCAACGAGTCGGACAACTCGGACTT
CGACGAAAGCTCCAGCGTGGGGCACGAGCAGAGGGTCAAGCTGTCGATCC
TGCTGCAGCTGGTCAAGAGCATGGCCGCCAGCAAGCCCCGCATCGTTGTG
ATCGACGATGCGCAATTCCTGGACAAGGACAGCTGGACGCTTGCCCTGCA
GATCGCAACCTGTTGTGATCGACGATGCGCAATTCCTGGACAAGGACAGC
TGGACGCTTGCCCTGCAGATCGCAACCTGCGGGCCCATGGGGACTCCGTT
GCCCCTGATGCTCATCCTCTCCTTCCGGCCTCTGTTTCACTACCGAGCTA
TCTTCTCACATATCGCCCCTGATTACAAGGCGGGCCCATGGGGACTCCGT
TGCCCCTGATGCTCATCCTCTCCTTCCGGCCTCTGTTTCACTACCGAGCT
ATCTTCTCACATATCGCCCCTGATTACAAG
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