mRNA_Ecto-sp9_F_contig1092.805.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1092.805.1
Unique NamemRNA_Ecto-sp9_F_contig1092.805.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1092.805.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR7_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 4.740e-59
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 3 
Query:   42 MRVGLATARALGFVTRRARRGRGPCSQSGAHRTPNAAAGPQAAGPRTASSSAASQGRMLEEFVMSRSQLGAATVLATQIRGAVCSVGGGDFSLEVEGDGDDDDGT 356
            MRVGLATARALGFVTRRARRGRGPCSQSG HRTPNAAAGPQAAGPRTASSSAASQGRM+EEFVMSRSQLGAATVLATQIRGAVCSVGGGDFSLEVEGDGDDDDGT
Sbjct:    1 MRVGLATARALGFVTRRARRGRGPCSQSGLHRTPNAAAGPQAAGPRTASSSAASQGRMVEEFVMSRSQLGAATVLATQIRGAVCSVGGGDFSLEVEGDGDDDDGT 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1092.805.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.740e-5998.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1092contigEcto-sp9_F_contig1092:7696..8838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size596
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1092.805.1prot_Ecto-sp9_F_contig1092.805.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1092 7737..8601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928322.022405-UTR-Ecto-sp9_F_contig1092:7695..77361622928322.022405-UTR-Ecto-sp9_F_contig1092:7695..7736Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1092 7696..7736 +
1692277832.5128183-UTR-Ecto-sp9_F_contig1092:7695..77361692277832.5128183-UTR-Ecto-sp9_F_contig1092:7695..7736Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1092 7696..7736 +
1622928322.0654008-UTR-Ecto-sp9_F_contig1092:8601..88381622928322.0654008-UTR-Ecto-sp9_F_contig1092:8601..8838Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1092 8602..8838 +
1692277832.556766-UTR-Ecto-sp9_F_contig1092:8601..88381692277832.556766-UTR-Ecto-sp9_F_contig1092:8601..8838Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1092 8602..8838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928322.0335305-CDS-Ecto-sp9_F_contig1092:7736..78041622928322.0335305-CDS-Ecto-sp9_F_contig1092:7736..7804Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 7737..7804 +
1692277832.5238266-CDS-Ecto-sp9_F_contig1092:7736..78041692277832.5238266-CDS-Ecto-sp9_F_contig1092:7736..7804Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 7737..7804 +
1622928322.0447009-CDS-Ecto-sp9_F_contig1092:8059..81831622928322.0447009-CDS-Ecto-sp9_F_contig1092:8059..8183Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 8060..8183 +
1692277832.53872-CDS-Ecto-sp9_F_contig1092:8059..81831692277832.53872-CDS-Ecto-sp9_F_contig1092:8059..8183Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 8060..8183 +
1622928322.0538878-CDS-Ecto-sp9_F_contig1092:8475..86011622928322.0538878-CDS-Ecto-sp9_F_contig1092:8475..8601Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 8476..8601 +
1692277832.548928-CDS-Ecto-sp9_F_contig1092:8475..86011692277832.548928-CDS-Ecto-sp9_F_contig1092:8475..8601Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 8476..8601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1092.805.1

>prot_Ecto-sp9_F_contig1092.805.1 ID=prot_Ecto-sp9_F_contig1092.805.1|Name=mRNA_Ecto-sp9_F_contig1092.805.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp
MRVGLATARALGFVTRRARRGRGPCSQSGAHRTPNAAAGPQAAGPRTASS
SAASQGRMLEEFVMSRSQLGAATVLATQIRGAVCSVGGGDFSLEVEGDGD
DDDGT*
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mRNA from alignment at Ecto-sp9_F_contig1092:7696..8838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1092.805.1 ID=mRNA_Ecto-sp9_F_contig1092.805.1|Name=mRNA_Ecto-sp9_F_contig1092.805.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1143bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1092:7696..8838+ (Ectocarpus species9 EcSCA_722f female)
ACCGTCCGTACAACACGAACACATAACAACACCACTGCACCATGAGGGTG
GGGTTGGCAACAGCAAGGGCACTGGGATTTGTGACGAGAAGGGCGCGACG
AGGAAGAGGGTGAGCGGAGCATGCTCTTGTGACGGGAGAGGACCTCGTTT
GCTGATCTGCGGGTGTCCGCAGCTGTGGCCTTCCGGCAGACACAGAGTCA
ACACCACTCGTGGCCGTGGAGCCAACACGACTGTGGTAGCAAAAGCAGCG
TAGCTTCCTTATGGCACACAAGTTTTGGAGTGTTGGCTCTCTGTTGTTGC
GTTAGACTCGAGTCTTGCCTCTAATGGTACTGCCGTATGCCGTATTGTTG
TGTGTGTTCGGCAGGCCGTGCTCACAATCAGGGGCTCATCGGACACCAAA
TGCAGCAGCAGGGCCTCAAGCGGCAGGACCAAGAACAGCATCATCTTCTG
CAGCATCACAGGGGCGCATGTTGGAAGAGTTTGTCATGGTGAGTTCGGTT
TTTAGTCCCATTCTCAGGCCACGACACCAACTTCTGTCCTTGTTGCGTCA
AGGGGAGGTTGTCGGCGTGTCACACAGCAGCAACGACAATTTACGCTTGA
CAATCATGCCGCAGCATGGTACAACGACCCATCCCGCGACTGCTCGTACA
GTATCAGTCACGCATGCTGATGAATGTTTCAATTCCACTACATACCACCC
TGTCCGTTTCCCGCCAGATCAATCTGTACCAACTGCCATTACGGCTATTC
CTTCCGTTGTTTTGGCCGTATTCTCGACAGTCTCGTAGCCAGCTTGGGGC
CGCCACCGTGCTCGCGACGCAAATACGCGGTGCCGTGTGCTCCGTGGGCG
GGGGCGACTTTAGCTTGGAGGTGGAAGGAGATGGAGACGACGACGATGGA
ACGTAGGTTGGTGATACCACAAGTATTATGAAGTACGAACTTTCCGCTCG
GTCAGATGGTTGTCATCCCCTCTCCACAAGTCTTTCACTACGACGGTAGC
AGATTGATGCGATGCAGAGATGGCAAGTATTCTGGATCCATGTTCGCGAG
AGAAAATGCTCAGGGTGGGGTCAAGCGTGTGAGAGGCCTGCAACTACTGG
TATATAACCGTGTTGACAGGTCGAAGGCAAAACAATCGGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1092:7696..8838+

>mRNA_Ecto-sp9_F_contig1092.805.1 ID=mRNA_Ecto-sp9_F_contig1092.805.1|Name=mRNA_Ecto-sp9_F_contig1092.805.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1092:7696..8838+ (Ectocarpus species9 EcSCA_722f female)
ATGAGGGTGGGGTTGGCAACAGCAAGGGCACTGGGATTTGTGACGAGAAG
GGCGCGACGAGGAAGAGGATGAGGGTGGGGTTGGCAACAGCAAGGGCACT
GGGATTTGTGACGAGAAGGGCGCGACGAGGAAGAGGGCCGTGCTCACAAT
CAGGGGCTCATCGGACACCAAATGCAGCAGCAGGGCCTCAAGCGGCAGGA
CCAAGAACAGCATCATCTTCTGCAGCATCACAGGGGCGCATGTTGGAAGA
GTTTGTCATGGCCGTGCTCACAATCAGGGGCTCATCGGACACCAAATGCA
GCAGCAGGGCCTCAAGCGGCAGGACCAAGAACAGCATCATCTTCTGCAGC
ATCACAGGGGCGCATGTTGGAAGAGTTTGTCATGTCTCGTAGCCAGCTTG
GGGCCGCCACCGTGCTCGCGACGCAAATACGCGGTGCCGTGTGCTCCGTG
GGCGGGGGCGACTTTAGCTTGGAGGTGGAAGGAGATGGAGACGACGACGA
TGGAACGTAGTCTCGTAGCCAGCTTGGGGCCGCCACCGTGCTCGCGACGC
AAATACGCGGTGCCGTGTGCTCCGTGGGCGGGGGCGACTTTAGCTTGGAG
GTGGAAGGAGATGGAGACGACGACGATGGAACGTAG
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