mRNA_Ecto-sp9_F_contig1092.804.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1092.804.1
Unique NamemRNA_Ecto-sp9_F_contig1092.804.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1092.804.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR8_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.220e-41
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 MRIAASAAARAFAKAARRTARPGQIGEGVSHGEAGRTMAATRMRAINTATGIQTHVGAAAVLVSKVVMISCSSSVAPTFLEXXXXXXXXXXXRRN 285
            MRIAASAAARAFAKAARRTARPGQIGEGVSHGEAGRTMAATRMRAINTATGIQTHVGAAAVLVSKVVMISCSSSVAPTFLEXXXXXXXXXXXRRN
Sbjct:    1 MRIAASAAARAFAKAARRTARPGQIGEGVSHGEAGRTMAATRMRAINTATGIQTHVGAAAVLVSKVVMISCSSSVAPTFLEXXXXXXXXXXXRRN 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1092.804.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.220e-41100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1092contigEcto-sp9_F_contig1092:6097..7484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006090.1
Exons3
Model size543
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1092.804.1prot_Ecto-sp9_F_contig1092.804.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1092 6352..7484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928321.9439175-UTR-Ecto-sp9_F_contig1092:6096..63511622928321.9439175-UTR-Ecto-sp9_F_contig1092:6096..6351Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1092 6097..6351 -
1692277832.4621816-UTR-Ecto-sp9_F_contig1092:6096..63511692277832.4621816-UTR-Ecto-sp9_F_contig1092:6096..6351Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1092 6097..6351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928321.9613478-CDS-Ecto-sp9_F_contig1092:6351..64861622928321.9613478-CDS-Ecto-sp9_F_contig1092:6351..6486Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 6352..6486 -
1692277832.4717097-CDS-Ecto-sp9_F_contig1092:6351..64861692277832.4717097-CDS-Ecto-sp9_F_contig1092:6351..6486Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 6352..6486 -
1622928321.973579-CDS-Ecto-sp9_F_contig1092:7011..71021622928321.973579-CDS-Ecto-sp9_F_contig1092:7011..7102Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 7012..7102 -
1692277832.4807978-CDS-Ecto-sp9_F_contig1092:7011..71021692277832.4807978-CDS-Ecto-sp9_F_contig1092:7011..7102Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 7012..7102 -
1622928321.987985-CDS-Ecto-sp9_F_contig1092:7422..74841622928321.987985-CDS-Ecto-sp9_F_contig1092:7422..7484Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 7423..7484 -
1692277832.5013468-CDS-Ecto-sp9_F_contig1092:7422..74841692277832.5013468-CDS-Ecto-sp9_F_contig1092:7422..7484Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1092 7423..7484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1092.804.1

>prot_Ecto-sp9_F_contig1092.804.1 ID=prot_Ecto-sp9_F_contig1092.804.1|Name=mRNA_Ecto-sp9_F_contig1092.804.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=96bp
MRIAASAAARAFAKAARRTARPGQIGEGVSHGEAGRTMAATRMRAINTAT
GIQTHVGAAAVLVSKVVMISCSSSVAPTFLEEEEEDEDDDGGRRN*
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mRNA from alignment at Ecto-sp9_F_contig1092:6097..7484-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1092.804.1 ID=mRNA_Ecto-sp9_F_contig1092.804.1|Name=mRNA_Ecto-sp9_F_contig1092.804.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1388bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1092:6097..7484- (Ectocarpus species9 EcSCA_722f female)
ATGAGAATAGCCGCATCAGCAGCAGCCCGGGCCTTCGCCAAAGCAGCTCG
ACGAACGGCCAGGTGAGTTGTGTTGGAAATTACCGACCGTTGGTTGGCGA
ACGTACAGCGGGGTCTCGTGGTGCGAGCGCTGCAACCGCACACAGCAGCA
GCAGCAGCCTGCGTAAAATGTAGACTACTGCCGTCCCTATTGTCGGCGAG
TGAGGTAGCAGTGAAGAAATATGACATTCTACCATCACGCACCCACACGC
TCGATGTCTGTGTCATCAGAGCAGTTACACCTCACGTGCAACACTTCACG
ACAACTACGCTGAATATCCCTCAAAGGCGGCGTAACCTCTCGTATGATCC
CGCGCCCCATTCGTCGTCCACTGCTGTCACAGGCCGGGACAGATTGGGGA
AGGCGTCAGCCACGGCGAAGCTGGGCGAACAATGGCGGCAACAAGAATGC
GAGCCATTAATACTGCTACGGGGGTGAGTGTTCGTGGGTCGTGCCTTCGT
TCACACTGCAAGGCCGCACATGTGTACGAATCATGTGTTCCCTGCTGCAG
TGCTGTAGACTCGAGCGTAGCCTCGACCGTCGTCGTTGTGGTGCTTGTGG
TGGCGGTAGGTTTTGACGTGCAAGACAAGACCCCTTCGCGTAGCGTTCTA
AGGTAACATCAGTTGTTGAAGCAGTCCACGGCTGTAGCCCCGCTTGAAGG
TTATCAACTAGAGGTTGAGGCGATGCTTGCTCGGTCCGGGAAGGAGAGGG
GGGGGCGTGACTTGATCCAGTTACACGCCATGACGAGGACCGAGCAATCT
TCGAGCTGAAACCCAGTGGTACCATGTGGTGAGCTTCAAGATAGGCGTTG
ATACATCCGCTGCAATAAGCCGCAATCTTTTAGCGCGTCGCATCTAGAGA
GACCGTGACGACGTTTCTCTTAATTTCAAGTGGCCACCCGCCACCACCAC
CGATTCCCACTCGTGCTGCCGCCCCCCCGCGATCATAACCCCTGGCAGAT
TCAGACACACGTCGGGGCAGCCGCCGTACTCGTTTCAAAGGTGGTGATGA
TCTCGTGTTCATCATCAGTAGCGCCGACTTTTTTGGAAGAGGAAGAAGAG
GATGAGGATGACGATGGAGGACGGAGGAATTGAGACACCAGCATTGGCGC
GGACGCCAAACAACTAGTGGGAGGGAGGGGGCATGACGGTGGTGTTAGGC
CATAAAGGAGTATTTTCAAGCGCACGTGTGGGCTTGCGTTGTCGGTTTAG
ACGCTGGACGGTGGTTCGGGGACAACGAGAGTGCAACCTGTTAAACTTGC
AATTGTTTGTTTGGGGCGATATTTTTCGTCGACATCGCCGAAACTCGTCA
TTTTTTTGGCGCTGCAAGAGGGCTCAAAGATCACGACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1092:6097..7484-

>mRNA_Ecto-sp9_F_contig1092.804.1 ID=mRNA_Ecto-sp9_F_contig1092.804.1|Name=mRNA_Ecto-sp9_F_contig1092.804.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1092:6097..7484- (Ectocarpus species9 EcSCA_722f female)
ATGAGAATAGCCGCATCAGCAGCAGCCCGGGCCTTCGCCAAAGCAGCTCG
ACGAACGGCCAGATGAGAATAGCCGCATCAGCAGCAGCCCGGGCCTTCGC
CAAAGCAGCTCGACGAACGGCCAGGCCGGGACAGATTGGGGAAGGCGTCA
GCCACGGCGAAGCTGGGCGAACAATGGCGGCAACAAGAATGCGAGCCATT
AATACTGCTACGGGGGCCGGGACAGATTGGGGAAGGCGTCAGCCACGGCG
AAGCTGGGCGAACAATGGCGGCAACAAGAATGCGAGCCATTAATACTGCT
ACGGGGATTCAGACACACGTCGGGGCAGCCGCCGTACTCGTTTCAAAGGT
GGTGATGATCTCGTGTTCATCATCAGTAGCGCCGACTTTTTTGGAAGAGG
AAGAAGAGGATGAGGATGACGATGGAGGACGGAGGAATTGAATTCAGACA
CACGTCGGGGCAGCCGCCGTACTCGTTTCAAAGGTGGTGATGATCTCGTG
TTCATCATCAGTAGCGCCGACTTTTTTGGAAGAGGAAGAAGAGGATGAGG
ATGACGATGGAGGACGGAGGAATTGA
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