mRNA_Ecto-sp9_F_contig10917.801.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10917.801.1
Unique NamemRNA_Ecto-sp9_F_contig10917.801.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Match: Phospholipid-translocating (P-type atpase domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJY5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.030e-37
Identity = 60/91 (65.93%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   16 LFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 288
            L K   +C++ V CR+SPDQKR +VHL+K+N P  R L++GDGANDVPMIQ AHVGVGI+G EG+QAVNASDY+++QFRFL+ LLL HGR+
Sbjct:  127 LLKLTRICKSVVACRVSPDQKRSIVHLVKNNEPACRALSIGDGANDVPMIQEAHVGVGIAGMEGMQAVNASDYAISQFRFLRSLLLAHGRW 217
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BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Match: Phospholipid-transporting (ATPase n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E1R7_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.430e-36
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   13 LLFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 288
            LL K A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+
Sbjct:  936 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEVRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRW 1027
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Match: Phospholipid-transporting (ATPase n=14 Tax=Phytophthora TaxID=4783 RepID=W2HMC0_PHYPR)

HSP 1 Score: 138 bits (347), Expect = 7.410e-36
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   13 LLFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 288
            LL K A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+
Sbjct:  925 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEMRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRW 1016
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP37_PHYRM)

HSP 1 Score: 138 bits (347), Expect = 7.410e-36
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   13 LLFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 288
            LL K A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+
Sbjct:  924 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRW 1015
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8V4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.530e-35
Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:   13 LLFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 288
            LL K A  C A + CR+SP QK QLV L++DNNP  RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+
Sbjct:  261 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPKIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRW 352
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W7A7_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.880e-35
Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:   13 LLFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 288
            LL K A  C A + CR+SP QK QLV L++DNNP  RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+
Sbjct:  904 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPKIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRW 995
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NQA7_PHYIT)

HSP 1 Score: 136 bits (343), Expect = 2.570e-35
Identity = 64/92 (69.57%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   13 LLFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 288
            LL K A  C A + CR+SP QK QLV L+++NNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+
Sbjct:  806 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRENNPEMRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRW 897
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Match: Phospholipid-transporting (ATPase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRZ8_9STRA)

HSP 1 Score: 136 bits (342), Expect = 3.500e-35
Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:   13 LLFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 288
            LL   A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+
Sbjct:  938 LLLSVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAMAQFRFLSRLLLVHGRW 1029
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AK28_PLAHL)

HSP 1 Score: 135 bits (341), Expect = 4.770e-35
Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:   13 LLFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 288
            LL K A  C A + CR+SP QK QLV L++DN P+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+
Sbjct:  912 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNKPEIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRW 1003
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Match: Phospholipid-transporting (ATPase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8V7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.200e-34
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 TTQFLLFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 288
            T ++ L +FA  C+A + CR+SP QK Q+V LIKDN P  RTLA+GDGANDVPMIQ AHVGVGISGQEGLQAVNASDY++ +F F+ +LLL HGR+
Sbjct:  775 TCRYALLEFAQHCKAVIACRVSPGQKAQMVALIKDNIPCVRTLAIGDGANDVPMIQEAHVGVGISGQEGLQAVNASDYAIGRFSFIGRLLLVHGRW 870
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10917.801.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Phospholipid-translocating1.030e-3765.93P-type atpase domain containing protein n=1 Tax=Na... [more]
Phospholipid-transporting5.430e-3670.65ATPase n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A... [more]
Phospholipid-transporting7.410e-3670.65ATPase n=14 Tax=Phytophthora TaxID=4783 RepID=W2HM... [more]
Phospholipid-transporting7.410e-3670.65ATPase n=1 Tax=Phytophthora ramorum TaxID=164328 R... [more]
Phospholipid-transporting1.530e-3570.65ATPase n=1 Tax=Phytophthora palmivora var. palmivo... [more]
Phospholipid-transporting1.880e-3570.65ATPase n=1 Tax=Phytophthora megakarya TaxID=4795 R... [more]
Phospholipid-transporting2.570e-3569.57ATPase n=1 Tax=Phytophthora infestans (strain T30-... [more]
Phospholipid-transporting3.500e-3569.57ATPase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=... [more]
Phospholipid-transporting4.770e-3569.57ATPase n=1 Tax=Plasmopara halstedii TaxID=4781 Rep... [more]
Phospholipid-transporting1.200e-3466.67ATPase n=2 Tax=Aphanomyces invadans TaxID=157072 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10917contigEcto-sp9_F_contig10917:3549..4149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.5e-30
Seed eggNOG ortholog67593.Physo129570
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
EggNOG free text desc.Phospholipid-translocating ATPase N-terminal
EggNOG OGs3QE12@4776,COG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categorysignal peptide
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928321.6703355-CDS-Ecto-sp9_F_contig10917:3548..36491622928321.6703355-CDS-Ecto-sp9_F_contig10917:3548..3649Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10917 3549..3649 -
1692277832.3228471-CDS-Ecto-sp9_F_contig10917:3548..36491692277832.3228471-CDS-Ecto-sp9_F_contig10917:3548..3649Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10917 3549..3649 -
1622928321.7127583-CDS-Ecto-sp9_F_contig10917:3962..41491622928321.7127583-CDS-Ecto-sp9_F_contig10917:3962..4149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10917 3963..4149 -
1692277832.3340878-CDS-Ecto-sp9_F_contig10917:3962..41491692277832.3340878-CDS-Ecto-sp9_F_contig10917:3962..4149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10917 3963..4149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10917.801.1prot_Ecto-sp9_F_contig10917.801.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10917 3549..4149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10917.801.1

>prot_Ecto-sp9_F_contig10917.801.1 ID=prot_Ecto-sp9_F_contig10917.801.1|Name=mRNA_Ecto-sp9_F_contig10917.801.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=96bp
TTQFLLFKFAGVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGAN
DVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY
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mRNA from alignment at Ecto-sp9_F_contig10917:3549..4149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10917.801.1 ID=mRNA_Ecto-sp9_F_contig10917.801.1|Name=mRNA_Ecto-sp9_F_contig10917.801.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=601bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10917:3549..4149- (Ectocarpus species9 EcSCA_722f female)
ACAACCCAATTTCTGTTGTTCAAGTTCGCGGGCGTGTGTCAGGCGTTTGT
CGGCTGCCGCATGTCTCCGGACCAGAAGCGGCAGCTGGTGCACCTCATCA
AGGACAACAACCCGGACGCCCGGACGCTTGCTGTCGGCGATGGGGCCAAC
GACGTGCCAATGATCCAGGCAGCACACGTCGGAGTCGGTAAGTGTTCATT
CAATCCTTGTCGCCTTCGTGACGAACAGCAATCTTACCTAAATGTAGAAT
AGTCCGTGGGAACAGCAATAGTACGTGACGAACCGAAACCTGCTGTGTGT
GGGGAAAAAGGGAGTAGTACATATCATAACTGAAAATCAATAATACAGCA
TGATCACAGTAGAGTATAATAAGATATAGGGGTGAGCTTGATGTGTTTTT
GGTTTCGGGCAGGGCAACATGCGTCTATTTTTATGTGATTTTTATGCCCA
GTGTTTCCTCATGTGTACCATCGCTTTGTCTTATGTGCTTGGTGGTGCAG
GCATCAGCGGACAGGAGGGGCTGCAAGCGGTTAACGCGAGCGACTACTCC
CTCGCGCAGTTCCGGTTCCTGCAGAAGCTTCTTCTTTGCCATGGAAGGTA
T
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10917:3549..4149-

>mRNA_Ecto-sp9_F_contig10917.801.1 ID=mRNA_Ecto-sp9_F_contig10917.801.1|Name=mRNA_Ecto-sp9_F_contig10917.801.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10917:3549..4149- (Ectocarpus species9 EcSCA_722f female)
ACAACCCAATTTCTGTTGTTCAAGTTCGCGGGCGTGTGTCAGGCGTTTGT
CGGCTGCCGCATGTCTCCGGACCAGAAGCGGCAGCTGGTGCACCTCATCA
AGGACAACAACCCGGACGCCCGGACGCTTGCTGTCGGCGATGGGGCCAAC
GACGTGCCAATGATCCAGGCAGCACACGTCGGAGTCGACAACCCAATTTC
TGTTGTTCAAGTTCGCGGGCGTGTGTCAGGCGTTTGTCGGCTGCCGCATG
TCTCCGGACCAGAAGCGGCAGCTGGTGCACCTCATCAAGGACAACAACCC
GGACGCCCGGACGCTTGCTGTCGGCGATGGGGCCAACGACGTGCCAATGA
TCCAGGCAGCACACGTCGGAGTCGGCATCAGCGGACAGGAGGGGCTGCAA
GCGGTTAACGCGAGCGACTACTCCCTCGCGCAGTTCCGGTTCCTGCAGAA
GCTTCTTCTTTGCCATGGAAGGTATGCATCAGCGGACAGGAGGGGCTGCA
AGCGGTTAACGCGAGCGACTACTCCCTCGCGCAGTTCCGGTTCCTGCAGA
AGCTTCTTCTTTGCCATGGAAGGTAT
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