mRNA_Ecto-sp9_F_contig10917.800.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10917.800.1
Unique NamemRNA_Ecto-sp9_F_contig10917.800.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Match: P-type (ATPase (PMID 12707717) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM94_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 7.850e-43
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 204
            MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR
Sbjct:    1 MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 68
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BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LVN7_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 3.600e-9
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   10 ATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 204
            A +Y+FYK+V   + LF++ FFNG SG   Y+ + S  + +++T LP+++LG+ D DV P  AL 
Sbjct:  520 AINYIFYKNVMNTLVLFLFCFFNGFSGSSLYESLTSAAYNVVWTSLPVIVLGIIDKDVSPKHALE 584
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BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K1G8_SCHJY)

HSP 1 Score: 60.1 bits (144), Expect = 6.800e-9
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   25 FYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 204
            FYKS+ W   LF Y  FNG    + +D+   ML+ ++++ LP++++GVYD DV    +LR
Sbjct: 1048 FYKSIVWTFTLFWYQIFNGFDANYLFDYTYIMLFNIVFSSLPVIVMGVYDQDVSAEMSLR 1107
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6JYR4_SCHJY)

HSP 1 Score: 59.7 bits (143), Expect = 9.290e-9
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   25 FYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 204
            FYK+V W   LF Y  FN   G + +D+   ML+ L++T LP++++G +D DV  +T+LR
Sbjct: 1063 FYKNVVWTFTLFWYQLFNEFDGNYIFDYTYVMLFNLVFTSLPVIIIGCFDQDVDATTSLR 1122
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BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Match: Phospholipid-transporting (ATPase (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821B8Q9_9NEOB)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   16 SYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDV 183
            SY FYK+ ++ +  F Y+FFNG SGQ  YD V   L+ LLY+ LPI+++G+ D DV
Sbjct:  583 SYFFYKNFAYTLVHFWYSFFNGFSGQTVYDTVFIALYNLLYSSLPIIIVGLQDQDV 638
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BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Match: phospholipid-transporting (ATPase IC n=1 Tax=Bufo bufo TaxID=8384 RepID=UPI001ABE5FBE)

HSP 1 Score: 59.3 bits (142), Expect = 1.270e-8
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   16 SYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDV 183
            +Y FYK+ ++ +  F YAFFNG SGQ  YD V   L+ LLY+ LPI+++G+ D DV
Sbjct:  943 TYFFYKNFAYTLVHFWYAFFNGFSGQTVYDTVFMALYNLLYSSLPIIVVGLQDQDV 998
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BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0H983_SPIPD)

HSP 1 Score: 59.3 bits (142), Expect = 1.270e-8
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   25 FYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTAL 201
            F K+V W + LF Y F+ G S Q  YD+  ++L+ +++TGLP++++GV+D D+ P + L
Sbjct:  965 FVKNVVWVMVLFWYQFYAGFSAQSVYDFTYTLLYNIVFTGLPVIMIGVFDQDLSPRSIL 1023
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BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WPS0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.270e-8
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    1 MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 204
            MS    Y+FYK++   +  F Y F++G SGQ FY      L+  +YT LPI++LGV+DMDV P T  R
Sbjct:  959 MSVLVGYMFYKNILMVLAQFYYTFYSGASGQKFYSEFYFQLYNAMYTTLPILVLGVFDMDV-PWTISR 1025
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BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGU9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.740e-8
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDV 183
            MS    Y+FYK++   +  F Y F++G SGQ FY      L+  +YT LPI++LGV+DMDV
Sbjct:  961 MSVLVGYMFYKNILMVLAQFYYTFYSGASGQKFYSEFYFQLYNAMYTTLPILVLGVFDMDV 1021
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Match: P-type (phospholipid transporter n=6 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CL41_RHOTO)

HSP 1 Score: 58.2 bits (139), Expect = 3.260e-8
Identity = 23/59 (38.98%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   25 FYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTAL 201
            FYK++ W + LF++ FF      + Y++   ML++L++T LP+ +LG++D DV   TAL
Sbjct: 1239 FYKNIVWTLTLFIFQFFCNFDSTYLYEYTLLMLFSLVFTSLPVAVLGIFDQDVHAKTAL 1297
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10917.800.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
P-type7.850e-43100.00ATPase (PMID 12707717) n=2 Tax=Ectocarpus TaxID=28... [more]
Phospholipid-transporting3.600e-941.54ATPase n=1 Tax=Palpitomonas bilix TaxID=652834 Rep... [more]
Phospholipid-transporting6.800e-940.00ATPase n=1 Tax=Schizosaccharomyces japonicus (stra... [more]
Phospholipid-transporting9.290e-941.67ATPase n=1 Tax=Schizosaccharomyces japonicus (stra... [more]
Phospholipid-transporting1.260e-850.00ATPase (Fragment) n=1 Tax=Ranitomeya imitator TaxI... [more]
phospholipid-transporting1.270e-850.00ATPase IC n=1 Tax=Bufo bufo TaxID=8384 RepID=UPI00... [more]
Phospholipid-transporting1.270e-840.68ATPase n=1 Tax=Spizellomyces punctatus (strain DAO... [more]
Phospholipid-transporting1.270e-845.59ATPase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 ... [more]
Phospholipid-transporting1.740e-845.90ATPase n=1 Tax=Albugo candida TaxID=65357 RepID=A0... [more]
P-type3.260e-838.98phospholipid transporter n=6 Tax=Rhodosporidium to... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10917contigEcto-sp9_F_contig10917:2287..2983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue4.7e-31
Seed eggNOG ortholog2880.D7FM94
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.1.3,3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionP-type ATPase (PMID 12707717)
Ec32 orthologEc-00_002770.1
Exons2
Model size207
Cds size207
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928321.6043773-CDS-Ecto-sp9_F_contig10917:2286..24141622928321.6043773-CDS-Ecto-sp9_F_contig10917:2286..2414Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10917 2287..2414 -
1692277832.300352-CDS-Ecto-sp9_F_contig10917:2286..24141692277832.300352-CDS-Ecto-sp9_F_contig10917:2286..2414Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10917 2287..2414 -
1622928321.6327207-CDS-Ecto-sp9_F_contig10917:2904..29831622928321.6327207-CDS-Ecto-sp9_F_contig10917:2904..2983Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10917 2905..2983 -
1692277832.3131568-CDS-Ecto-sp9_F_contig10917:2904..29831692277832.3131568-CDS-Ecto-sp9_F_contig10917:2904..2983Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10917 2905..2983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10917.800.1prot_Ecto-sp9_F_contig10917.800.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10917 2287..2983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10917.800.1

>prot_Ecto-sp9_F_contig10917.800.1 ID=prot_Ecto-sp9_F_contig10917.800.1|Name=mRNA_Ecto-sp9_F_contig10917.800.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=69bp
MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLP
IVLLGVYDMDVLPSTALR*
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mRNA from alignment at Ecto-sp9_F_contig10917:2287..2983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10917.800.1 ID=mRNA_Ecto-sp9_F_contig10917.800.1|Name=mRNA_Ecto-sp9_F_contig10917.800.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=697bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10917:2287..2983- (Ectocarpus species9 EcSCA_722f female)
ATGAGCTTCGCAACCAGCTACCTCTTCTACAAGTCGGTCAGCTGGGCCGT
CCCTCTCTTTGTTTACGCCTTCTTTAACGGTAAGTTTTTTTATTTCTTTT
TTCTTCGTTTCTTTTTGCTTGTGTTCTCGAATTCCACCGACACCCGTCCA
CACATCAGGAATGGTCATCAAAGCTACCAAGAATCATTTGGCGGAGTCCA
CTTGTGCCAAACCACTGCTGTGTAGTACGCGACGAACGTATTCGTTGATT
TTTTCGCCATGAGCCTGATGATGTTTTTCATGTCTCTCGCTTTTTTTGGC
ATCATCACCAGCACGTTGCCCAAGCATTGTCGCGTACAACACACGAGTAT
TTTTCACAGCACACAAACAGCCCTTCATTTCTCCCGCCTCCTCTCTTGTC
GAAATCTGCGCGTCGTAGTTCAGTATGTGCTCAACGCTATTGAGAACCAA
TCCACCTCCCCTCCCAAACATTGACGCGTTTTCATTGGTCAGCCGGTAGC
GCGGTCAATGCTAGCCGGTCAATACCGTACACCGCAACCCCCCCAACCCT
CCGGCCTCCTGTCGTCCAGGGCTTAGCGGACAGTTCTTCTACGACTGGGT
GAACTCCATGCTGTGGGCCCTGCTCTACACCGGCCTGCCGATCGTGCTGC
TAGGGGTGTACGACATGGATGTTTTGCCCTCGACAGCGCTAAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10917:2287..2983-

>mRNA_Ecto-sp9_F_contig10917.800.1 ID=mRNA_Ecto-sp9_F_contig10917.800.1|Name=mRNA_Ecto-sp9_F_contig10917.800.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10917:2287..2983- (Ectocarpus species9 EcSCA_722f female)
ATGAGCTTCGCAACCAGCTACCTCTTCTACAAGTCGGTCAGCTGGGCCGT
CCCTCTCTTTGTTTACGCCTTCTTTAACGATGAGCTTCGCAACCAGCTAC
CTCTTCTACAAGTCGGTCAGCTGGGCCGTCCCTCTCTTTGTTTACGCCTT
CTTTAACGGGCTTAGCGGACAGTTCTTCTACGACTGGGTGAACTCCATGC
TGTGGGCCCTGCTCTACACCGGCCTGCCGATCGTGCTGCTAGGGGTGTAC
GACATGGATGTTTTGCCCTCGACAGCGCTAAGGTAGGGCTTAGCGGACAG
TTCTTCTACGACTGGGTGAACTCCATGCTGTGGGCCCTGCTCTACACCGG
CCTGCCGATCGTGCTGCTAGGGGTGTACGACATGGATGTTTTGCCCTCGA
CAGCGCTAAGGTAG
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