mRNA_Ecto-sp9_F_contig10914.798.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10914.798.1
Unique NamemRNA_Ecto-sp9_F_contig10914.798.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10914.798.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FN95_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 2.820e-5
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:  115 LHSIAAKNGHLELLKCLWLDGPELDATVCDRAAFAGRLDVVKYAR---DKNCPWDSCMFSMAATRG 303
            L + A++ GHL  LK L  +G  L + VC RAA AG L V+ +AR      CPWDS   + AA  G
Sbjct:   61 LAAFASEGGHLGTLKWLRQEGCTLTSEVCTRAALAGHLHVIYWARRTVKPKCPWDSMTVANAAYAG 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10914.798.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Hypothetical2.820e-543.94protein (Fragment) n=1 Tax=Chloropicon roscoffensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10914contigEcto-sp9_F_contig10914:2105..2407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928321.5412738-CDS-Ecto-sp9_F_contig10914:2104..23801622928321.5412738-CDS-Ecto-sp9_F_contig10914:2104..2380Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10914 2105..2380 -
1692277832.2817938-CDS-Ecto-sp9_F_contig10914:2104..23801692277832.2817938-CDS-Ecto-sp9_F_contig10914:2104..2380Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10914 2105..2380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928321.5623603-UTR-Ecto-sp9_F_contig10914:2380..24071622928321.5623603-UTR-Ecto-sp9_F_contig10914:2380..2407Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10914 2381..2407 -
1692277832.2904005-UTR-Ecto-sp9_F_contig10914:2380..24071692277832.2904005-UTR-Ecto-sp9_F_contig10914:2380..2407Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10914 2381..2407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10914.798.1prot_Ecto-sp9_F_contig10914.798.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10914 2105..2380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10914.798.1

>prot_Ecto-sp9_F_contig10914.798.1 ID=prot_Ecto-sp9_F_contig10914.798.1|Name=mRNA_Ecto-sp9_F_contig10914.798.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp
MYTAYAATAGGHLKVMRWLKKQTCVCGPSLHSIAAKNGHLELLKCLWLDG
PELDATVCDRAAFAGRLDVVKYARDKNCPWDSCMFSMAATRG
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mRNA from alignment at Ecto-sp9_F_contig10914:2105..2407-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10914.798.1 ID=mRNA_Ecto-sp9_F_contig10914.798.1|Name=mRNA_Ecto-sp9_F_contig10914.798.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10914:2105..2407- (Ectocarpus species9 EcSCA_722f female)
CGGTGGGTTTTAGGCCAGGGGGTGGACATGTACACGGCTTACGCCGCCAC
GGCCGGTGGCCACTTGAAAGTCATGAGGTGGTTGAAAAAGCAAACCTGTG
TCTGTGGACCTTCTTTGCACTCCATCGCCGCCAAGAACGGCCACCTCGAA
CTATTGAAGTGCTTGTGGTTGGACGGGCCCGAGCTAGATGCCACGGTGTG
TGACAGGGCCGCCTTCGCGGGTCGTTTGGACGTTGTCAAGTATGCGCGTG
ATAAAAACTGCCCTTGGGATTCATGTATGTTTTCGATGGCAGCAACACGT
GGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10914:2105..2407-

>mRNA_Ecto-sp9_F_contig10914.798.1 ID=mRNA_Ecto-sp9_F_contig10914.798.1|Name=mRNA_Ecto-sp9_F_contig10914.798.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10914:2105..2407- (Ectocarpus species9 EcSCA_722f female)
ATGTACACGGCTTACGCCGCCACGGCCGGTGGCCACTTGAAAGTCATGAG
GTGGTTGAAAAAGCAAACCTGTGTCTGTGGACCTTCTTTGCACTCCATCG
CCGCCAAGAACGGCCACCTCGAACTATTGAAGTGCTTGTGGTTGGACGGG
CCCGAGCTAGATGCCACGGTGTGTGACAGGGCCGCCTTCGCGGGTCGTTT
GGACGTTGTCAAGTATGCGCGTGATAAAAACTGCCCTTGGGATTCATGTA
TGTTTTCGATGGCAGCAACACGTGGAATGTACACGGCTTACGCCGCCACG
GCCGGTGGCCACTTGAAAGTCATGAGGTGGTTGAAAAAGCAAACCTGTGT
CTGTGGACCTTCTTTGCACTCCATCGCCGCCAAGAACGGCCACCTCGAAC
TATTGAAGTGCTTGTGGTTGGACGGGCCCGAGCTAGATGCCACGGTGTGT
GACAGGGCCGCCTTCGCGGGTCGTTTGGACGTTGTCAAGTATGCGCGTGA
TAAAAACTGCCCTTGGGATTCATGTATGTTTTCGATGGCAGCAACACGTG
GA
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