mRNA_Ecto-sp9_F_contig10908.792.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10908.792.1
Unique NamemRNA_Ecto-sp9_F_contig10908.792.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10908.792.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10908contigEcto-sp9_F_contig10908:3316..3480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_010290.1
Exons1
Model size165
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928319.694394-CDS-Ecto-sp9_F_contig10908:3315..34801622928319.694394-CDS-Ecto-sp9_F_contig10908:3315..3480Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10908 3316..3480 -
1692277831.7038896-CDS-Ecto-sp9_F_contig10908:3315..34801692277831.7038896-CDS-Ecto-sp9_F_contig10908:3315..3480Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10908 3316..3480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10908.792.1prot_Ecto-sp9_F_contig10908.792.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10908 3316..3480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10908.792.1

>prot_Ecto-sp9_F_contig10908.792.1 ID=prot_Ecto-sp9_F_contig10908.792.1|Name=mRNA_Ecto-sp9_F_contig10908.792.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=55bp
MFVRPLDLLVLEWIKQSIVDDSTPPRYLGPNLDRPSSHDTLFPTLYDGTS
LKTA*
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mRNA from alignment at Ecto-sp9_F_contig10908:3316..3480-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10908.792.1 ID=mRNA_Ecto-sp9_F_contig10908.792.1|Name=mRNA_Ecto-sp9_F_contig10908.792.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10908:3316..3480- (Ectocarpus species9 EcSCA_722f female)
ATGTTCGTTCGACCTCTCGACCTCCTTGTACTCGAATGGATTAAGCAAAG
CATAGTGGATGATTCGACCCCCCCTCGATATCTCGGACCAAATCTGGATC
GCCCCTCATCACACGACACATTGTTTCCGACGCTCTACGACGGAACCTCG
CTGAAGACTGCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10908:3316..3480-

>mRNA_Ecto-sp9_F_contig10908.792.1 ID=mRNA_Ecto-sp9_F_contig10908.792.1|Name=mRNA_Ecto-sp9_F_contig10908.792.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10908:3316..3480- (Ectocarpus species9 EcSCA_722f female)
ATGTTCGTTCGACCTCTCGACCTCCTTGTACTCGAATGGATTAAGCAAAG
CATAGTGGATGATTCGACCCCCCCTCGATATCTCGGACCAAATCTGGATC
GCCCCTCATCACACGACACATTGTTTCCGACGCTCTACGACGGAACCTCG
CTGAAGACTGCCTAGATGTTCGTTCGACCTCTCGACCTCCTTGTACTCGA
ATGGATTAAGCAAAGCATAGTGGATGATTCGACCCCCCCTCGATATCTCG
GACCAAATCTGGATCGCCCCTCATCACACGACACATTGTTTCCGACGCTC
TACGACGGAACCTCGCTGAAGACTGCCTAG
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