mRNA_Ecto-sp9_F_contig1090.785.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE) HSP 1 Score: 153 bits (387), Expect = 2.870e-42 Identity = 76/86 (88.37%), Postives = 77/86 (89.53%), Query Frame = 1
Query: 1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
MVGRF ADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAI+KCMISEICGKQHEKVGMGYVTG
Sbjct: 91 MVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMGYVTG 176
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE) HSP 1 Score: 152 bits (384), Expect = 4.420e-41 Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 1
Query: 1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
MVGRFATS ADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMN L+ I+KCMISEICGKQHE VGMGYVTG
Sbjct: 127 MVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMGYVTG 212
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI) HSP 1 Score: 150 bits (380), Expect = 1.610e-40 Identity = 74/86 (86.05%), Postives = 76/86 (88.37%), Query Frame = 1
Query: 1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
MVGRF ADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAI+KCMISEICGKQHE VGMGY+TG
Sbjct: 59 MVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMGYITG 144
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI) HSP 1 Score: 129 bits (325), Expect = 5.910e-33 Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1
Query: 1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
MVGR +SYFWGRFAD +GRLPV+Y GL+S+ VLS+AFGLST+F WAL CRFLLG +NGL+ I+K M SE+CGK+HE GM YV G
Sbjct: 80 MVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCRFLLGVLNGLLGISKAMTSEVCGKEHEATGMAYVLG 165
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV5_ECTSI) HSP 1 Score: 105 bits (263), Expect = 1.540e-27 Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 1
Query: 1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVT 255
M GR ++YFWG ADR GR PVV + L+S G L++AFG ST F WAL CRFLLG +NG+ I ++SEICGK+HE VG+G VT
Sbjct: 15 MFGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPTLVSEICGKEHEVVGLGAVT 99
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Major (facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M2_9STRA) HSP 1 Score: 110 bits (274), Expect = 5.070e-26 Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
M+GRFA+SY WGRF+D+YGR P + IG +S+ V SL FGLST W A+ R LLGA+NG ++ K +SEICGK HE GMGY+TG
Sbjct: 15 MLGRFASSYPWGRFSDKYGRKPALLIGAASVCVFSLGFGLSTELWVAVLMRLLLGALNGTVSTCKVCVSEICGKAHEVKGMGYITG 100
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.340e-25 Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1
Query: 1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVT 255
MVGR ++YFWG ADR GR PVV + L+S G L++AFG ST F WAL CRFLLG +NG+ I ++SEICGK+HE VG+G VT
Sbjct: 15 MVGRVISAYFWGIIADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPSLVSEICGKEHEVVGLGAVT 99
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: MFS (domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AF44_OPUST) HSP 1 Score: 94.4 bits (233), Expect = 9.730e-21 Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVT 255
M+GR TS FWG ADRYGR PV+ G +++ + + FGLS FW A++ RFLLG++NGL+ K ISE+C ++H+ VGM +T
Sbjct: 87 MLGRALTSVFWGTIADRYGRKPVMIFGAAAVVIFNTLFGLSVNFWMAVSTRFLLGSLNGLLGPAKAYISEVCREEHQAVGMSVIT 171
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB92_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.830e-20 Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
M GR +S+FWG +ADRYGR PV+ IG +SI VLS+ FG+ST F AL RFL+G NG+ +K +++E+C + + MG+VTG
Sbjct: 80 MAGRTVSSFFWGIYADRYGRKPVILIGCASIAVLSVLFGVSTTFSMALVTRFLIGLGNGIAGTSKTIVAELCSEDFQPRAMGFVTG 165
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: MFS (domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QBB5_SPIOL) HSP 1 Score: 92.0 bits (227), Expect = 1.050e-19 Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVT 255
M GR TS FWG+ ADRYGR P++ IG +++ + + FGLS FW A++ RFLLG++ G++ K +SE+C ++H+ VGM +T
Sbjct: 87 MFGRALTSVFWGKLADRYGRKPIIIIGTTAVVIFNTMFGLSVNFWMAVSSRFLLGSLCGILGPAKAYVSEVCREEHQAVGMSVIT 171 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1090.785.1 >prot_Ecto-sp9_F_contig1090.785.1 ID=prot_Ecto-sp9_F_contig1090.785.1|Name=mRNA_Ecto-sp9_F_contig1090.785.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=98bp MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCback to top mRNA from alignment at Ecto-sp9_F_contig1090:2453..3112- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1090.785.1 ID=mRNA_Ecto-sp9_F_contig1090.785.1|Name=mRNA_Ecto-sp9_F_contig1090.785.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=660bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1090:2453..3112- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1090:2453..3112- >mRNA_Ecto-sp9_F_contig1090.785.1 ID=mRNA_Ecto-sp9_F_contig1090.785.1|Name=mRNA_Ecto-sp9_F_contig1090.785.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1090:2453..3112- (Ectocarpus species9 EcSCA_722f female)back to top |