mRNA_Ecto-sp9_F_contig1090.785.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1090.785.1
Unique NamemRNA_Ecto-sp9_F_contig1090.785.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.870e-42
Identity = 76/86 (88.37%), Postives = 77/86 (89.53%), Query Frame = 1
Query:    1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
            MVGRF         ADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAI+KCMISEICGKQHEKVGMGYVTG
Sbjct:   91 MVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMGYVTG 176          
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 4.420e-41
Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 1
Query:    1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
            MVGRFATS      ADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMN L+ I+KCMISEICGKQHE VGMGYVTG
Sbjct:  127 MVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMGYVTG 212          
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.610e-40
Identity = 74/86 (86.05%), Postives = 76/86 (88.37%), Query Frame = 1
Query:    1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
            MVGRF         ADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAI+KCMISEICGKQHE VGMGY+TG
Sbjct:   59 MVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMGYITG 144          
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.910e-33
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
            MVGR  +SYFWGRFAD +GRLPV+Y GL+S+ VLS+AFGLST+F WAL CRFLLG +NGL+ I+K M SE+CGK+HE  GM YV G
Sbjct:   80 MVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCRFLLGVLNGLLGISKAMTSEVCGKEHEATGMAYVLG 165          
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV5_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.540e-27
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVT 255
            M GR  ++YFWG  ADR GR PVV + L+S G L++AFG ST F WAL CRFLLG +NG+  I   ++SEICGK+HE VG+G VT
Sbjct:   15 MFGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPTLVSEICGKEHEVVGLGAVT 99          
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Major (facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.070e-26
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
            M+GRFA+SY WGRF+D+YGR P + IG +S+ V SL FGLST  W A+  R LLGA+NG ++  K  +SEICGK HE  GMGY+TG
Sbjct:   15 MLGRFASSYPWGRFSDKYGRKPALLIGAASVCVFSLGFGLSTELWVAVLMRLLLGALNGTVSTCKVCVSEICGKAHEVKGMGYITG 100          
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.340e-25
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVT 255
            MVGR  ++YFWG  ADR GR PVV + L+S G L++AFG ST F WAL CRFLLG +NG+  I   ++SEICGK+HE VG+G VT
Sbjct:   15 MVGRVISAYFWGIIADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPSLVSEICGKEHEVVGLGAVT 99          
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: MFS (domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AF44_OPUST)

HSP 1 Score: 94.4 bits (233), Expect = 9.730e-21
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVT 255
            M+GR  TS FWG  ADRYGR PV+  G +++ + +  FGLS  FW A++ RFLLG++NGL+   K  ISE+C ++H+ VGM  +T
Sbjct:   87 MLGRALTSVFWGTIADRYGRKPVMIFGAAAVVIFNTLFGLSVNFWMAVSTRFLLGSLNGLLGPAKAYISEVCREEHQAVGMSVIT 171          
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB92_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.830e-20
Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTG 258
            M GR  +S+FWG +ADRYGR PV+ IG +SI VLS+ FG+ST F  AL  RFL+G  NG+   +K +++E+C +  +   MG+VTG
Sbjct:   80 MAGRTVSSFFWGIYADRYGRKPVILIGCASIAVLSVLFGVSTTFSMALVTRFLIGLGNGIAGTSKTIVAELCSEDFQPRAMGFVTG 165          
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Match: MFS (domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QBB5_SPIOL)

HSP 1 Score: 92.0 bits (227), Expect = 1.050e-19
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVT 255
            M GR  TS FWG+ ADRYGR P++ IG +++ + +  FGLS  FW A++ RFLLG++ G++   K  +SE+C ++H+ VGM  +T
Sbjct:   87 MFGRALTSVFWGKLADRYGRKPIIIIGTTAVVIFNTMFGLSVNFWMAVSSRFLLGSLCGILGPAKAYVSEVCREEHQAVGMSVIT 171          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1090.785.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.870e-4288.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.420e-4187.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.610e-4086.05protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.910e-3368.60protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
MFS1.540e-2758.82domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Major5.070e-2659.30facilitator superfamily domain-containing protein ... [more]
MFS1.340e-2560.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
MFS9.730e-2149.41domain-containing protein (Fragment) n=1 Tax=Opunt... [more]
Hypothetical2.830e-2050.00protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
MFS1.050e-1945.88domain-containing protein n=2 Tax=Spinacia olerace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1090contigEcto-sp9_F_contig1090:2453..3112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue5e-34
Seed eggNOG ortholog2880.D8LRH7
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size296
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928318.7874105-CDS-Ecto-sp9_F_contig1090:2452..25941622928318.7874105-CDS-Ecto-sp9_F_contig1090:2452..2594Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1090 2453..2594 -
1692277831.2755518-CDS-Ecto-sp9_F_contig1090:2452..25941692277831.2755518-CDS-Ecto-sp9_F_contig1090:2452..2594Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1090 2453..2594 -
1622928318.80471-CDS-Ecto-sp9_F_contig1090:2960..31121622928318.80471-CDS-Ecto-sp9_F_contig1090:2960..3112Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1090 2961..3112 -
1692277831.2850888-CDS-Ecto-sp9_F_contig1090:2960..31121692277831.2850888-CDS-Ecto-sp9_F_contig1090:2960..3112Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1090 2961..3112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1090.785.1prot_Ecto-sp9_F_contig1090.785.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1090 2453..3112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1090.785.1

>prot_Ecto-sp9_F_contig1090.785.1 ID=prot_Ecto-sp9_F_contig1090.785.1|Name=mRNA_Ecto-sp9_F_contig1090.785.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=98bp
MVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTC
RFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGNDMYLGKYTCDS
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mRNA from alignment at Ecto-sp9_F_contig1090:2453..3112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1090.785.1 ID=mRNA_Ecto-sp9_F_contig1090.785.1|Name=mRNA_Ecto-sp9_F_contig1090.785.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=660bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1090:2453..3112- (Ectocarpus species9 EcSCA_722f female)
ATGGTTGGTCGGTTCGCCACCTCGTACTTCTGGGGCCGCTTCGCAGACCG ATACGGGCGGCTGCCGGTGGTGTACATCGGACTCAGCTCCATCGGCGTCC TGTCTTTGGCTTTCGGGCTGTCGACCGCCTTCTGGTGGGCCCTCACTTGC CGGTGAGGGTGAGGGTTAGGGTTAGGGTTAGGATTGGACCTATAGATGAG GTCTTGAGTTGCATGCTCTCGTACGTTACACAAGATACCGCACCTCCCTG AACAAATTCTAAGGCCGAGTGTGTAGCTTGACAACAGGCATGGTGCGTCC ATTGGGGCGGCGCTGGTAAGATCTTGTCCAAGACCTTGAAAGCCTCCAAT TGTTTGGAATCGGCGACCCTCTTTTGTTGGGGAGAAAATTCGATCTTCTC GATTTTCTCGATTTTCGCATGAGGAGGGTTGTACCCATCTTTTGCGATCA CATCCAAAGGCAGCGAAGAATGCATCGGCTTGATTTGCTATTCACGCCGA CGACCTCCCAACCACTAGGTTTCTCCTGGGAGCGATGAACGGCCTCATCG CTATAACGAAGTGCATGATCTCCGAGATCTGCGGGAAGCAGCACGAGAAA GTTGGAATGGGCTACGTCACAGGTAACGATATGTACTTGGGTAAGTATAC TTGTGATTCA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1090:2453..3112-

>mRNA_Ecto-sp9_F_contig1090.785.1 ID=mRNA_Ecto-sp9_F_contig1090.785.1|Name=mRNA_Ecto-sp9_F_contig1090.785.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1090:2453..3112- (Ectocarpus species9 EcSCA_722f female)
ATGGTTGGTCGGTTCGCCACCTCGTACTTCTGGGGCCGCTTCGCAGACCG
ATACGGGCGGCTGCCGGTGGTGTACATCGGACTCAGCTCCATCGGCGTCC
TGTCTTTGGCTTTCGGGCTGTCGACCGCCTTCTGGTGGGCCCTCACTTGC
CGATGGTTGGTCGGTTCGCCACCTCGTACTTCTGGGGCCGCTTCGCAGAC
CGATACGGGCGGCTGCCGGTGGTGTACATCGGACTCAGCTCCATCGGCGT
CCTGTCTTTGGCTTTCGGGCTGTCGACCGCCTTCTGGTGGGCCCTCACTT
GCCGGTTTCTCCTGGGAGCGATGAACGGCCTCATCGCTATAACGAAGTGC
ATGATCTCCGAGATCTGCGGGAAGCAGCACGAGAAAGTTGGAATGGGCTA
CGTCACAGGTAACGATATGTACTTGGGTAAGTATACTTGTGATTCAGTTT
CTCCTGGGAGCGATGAACGGCCTCATCGCTATAACGAAGTGCATGATCTC
CGAGATCTGCGGGAAGCAGCACGAGAAAGTTGGAATGGGCTACGTCACAG
GTAACGATATGTACTTGGGTAAGTATACTTGTGATTCA
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