mRNA_Ecto-sp9_F_contig10899.778.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z6_ECTSI) HSP 1 Score: 280 bits (716), Expect = 3.190e-94 Identity = 130/137 (94.89%), Postives = 131/137 (95.62%), Query Frame = 1
Query: 1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSKDYGWQNPVAVVVVSKA 411
CGFAAP SKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFP GSCPSKHFPPAFDAGSETNNEKC CMPGRACP+ TRD RE HGRNSEGFIHVHRGFQGIGDLSKDYGWQNPVAVVVVSKA
Sbjct: 92 CGFAAPESKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPAGSCPSKHFPPAFDAGSETNNEKCTCMPGRACPKGTRDARERHGRNSEGFIHVHRGFQGIGDLSKDYGWQNPVAVVVVSKA 228
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G405_ECTSI) HSP 1 Score: 206 bits (523), Expect = 4.490e-65 Identity = 102/138 (73.91%), Postives = 110/138 (79.71%), Query Frame = 1
Query: 1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSKA 411
CGFA ++G + PGKTW G+I FD NKCK+PVYSVVAKL NTNDAFMGI GSKF CPSK FPPAFDAG+E NNEKC CMPGRACP S + RE HGR SEGFIHVHRG G+GDLSK DYGW NPVA VVVSKA
Sbjct: 80 CGFAV--AEGPLLPGKTWNGEITFDTNKCKEPVYSVVAKLTNTNDAFMGIDGSKF-LDKCPSKRFPPAFDAGTEKNNEKCTCMPGRACPASPKT-RENHGRGSEGFIHVHRGIDGVGDLSKADYGWNNPVAEVVVSKA 213
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z4_ECTSI) HSP 1 Score: 197 bits (502), Expect = 3.890e-61 Identity = 100/138 (72.46%), Postives = 110/138 (79.71%), Query Frame = 1
Query: 1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSKA 411
CGFAA ++G + PGKTW G+I FD +KCK+PVYSVVAKL NTNDAFMGI GSKF PSK FPPAFDAG+E NNEKC CMPGRACP S + RE HG SEGFIHVHRG G+GDLSK DYGW+NPVA VVVSKA
Sbjct: 136 CGFAA--AEGPLLPGKTWNGEITFDTDKCKEPVYSVVAKLTNTNDAFMGIDGSKF-LDKHPSKLFPPAFDAGTEKNNEKCTCMPGRACPASPKS-RENHGLGSEGFIHVHRGINGVGDLSKADYGWKNPVAEVVVSKA 269
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G413_ECTSI) HSP 1 Score: 189 bits (479), Expect = 1.530e-58 Identity = 95/137 (69.34%), Postives = 106/137 (77.37%), Query Frame = 1
Query: 1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSK 408
CGFAA ++G + PGKTW G+I FDANKCK PVYSVVAKL NTNDAFMGI GSKF PSK FPPAFDAG+E NNEKC C+ GRACP S + + GR SEGFIHVHRG G+GDLS+ DY W+NPVA VVVSK
Sbjct: 65 CGFAA--AEGPLLPGKTWNGEITFDANKCKRPVYSVVAKLTNTNDAFMGIDGSKF-LDKRPSKLFPPAFDAGTEKNNEKCTCIRGRACPASPKPRENLGGRGSEGFIHVHRGINGVGDLSQADYDWKNPVAEVVVSK 198
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Spondin (domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI) HSP 1 Score: 129 bits (325), Expect = 5.010e-35 Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1
Query: 1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPT-GSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIG-DLSK-DYGWQNPVAVVVVSK 408
CG A +G +FPG+TW G + D + C DPVYSVV+ L NTNDAF+GI GS SK FPPAFDAG+E NNE C +PG ACP + + ++ G E FIHVHRGF G+G DL + +Y W+NPVA V +++
Sbjct: 86 CGAVA--GEGPVFPGETWRGTLTIDESACPDPVYSVVSMLINTNDAFVGIDSDDLNVYGS--SKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDVPG---EEFIHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 217
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Spondin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI) HSP 1 Score: 129 bits (325), Expect = 5.720e-35 Identity = 65/137 (47.45%), Postives = 88/137 (64.23%), Query Frame = 1
Query: 1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSK 408
CG ++G +FPG+TW G++ D C +PVYSVV L NTNDAF+GI GS +K FPPAFDAG+E N+E+C+ +PG CP + + + G EG+IHVHRG G+GDL + Y W+NPVA + + K
Sbjct: 93 CGVVV--AEGPVFPGETWRGQLDVDPYICPNPVYSVVTMLINTNDAFVGIDSDTLELGS--TKAFPPAFDAGTEVNDERCSNIPGPGCPAGSGNNQNGPG---EGYIHVHRGVHGVGDLEEASYDWRNPVAEIYIQK 222
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Spondin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI) HSP 1 Score: 113 bits (283), Expect = 7.030e-29 Identity = 63/126 (50.00%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 34 IFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIG-DLSK-DYGWQNPVAVVVVS 405
+FPG TW G + D + C D YSVV+ L NTNDAF+GI ++ K FPPAFDAG+E NNE C +PG ACP D + EGFI V RGF G+G DL + +Y W+NPVA VVV+
Sbjct: 80 LFPGDTWRGVMTVDESICPDAQYSVVSMLINTNDAFVGIDSNRLVG---TEKVFPPAFDAGTEANNELCTHIPGPACPA---DSGNMEDGPGEGFISVSRGFHGVGPDLGEANYDWRNPVAEVVVA 199
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G406_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.100e-23 Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 1
Query: 214 GSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSKA 411
G+E NNEKC+CMPGRA P S + RE HGR SEGFIHVHRG +G+GDLS+ DY W+NPVA V VSKA
Sbjct: 16 GTEKNNEKCSCMPGRAWPASPKT-RENHGRGSEGFIHVHRGIKGVGDLSQADYDWKNPVAEVAVSKA 81
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Spondin (domain-containing protein n=1 Tax=Nitrospira bacterium SG8_35_4 TaxID=1704025 RepID=A0A0S8ARA7_9BACT) HSP 1 Score: 85.1 bits (209), Expect = 1.220e-17 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 22 SKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSKD-YGWQNPVAVVVVSK 408
S GL+FPG+T K + S+ A + TND F+ + G + P G + PA+DAGSE N+E C+ +PG C G I + EG++ +H G GIG L + Y W+NPVA +V+ +
Sbjct: 97 SDGLLFPGET---KTIMIPQSERYRYISIAAMIIPTNDGFIALNGVQAPAGGNAVMYLSPAYDAGSEMNDELCDNIPGPVC-----GGEAISEEDGEGYVRIHEGIHGIGSLDESIYDWRNPVARIVIQR 218
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Spondin (domain-containing protein n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A353ZYF9_9BACT) HSP 1 Score: 84.7 bits (208), Expect = 1.650e-17 Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query: 22 SKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSKD-YGWQNPVAVVVVSK 408
S GL+ PG+T ++ A + D V S+ A L TND F+ + G P G + PA+DAGSE N+E+C +PG A G + + EG++H+H G GIGD+ Y W+NPVA +V+ K
Sbjct: 97 SGGLLGPGET--ATVKIAAGRGFDYV-SLAAMLVPTNDGFIALNGVHAPLGHTAEMYLSPAYDAGSEMNDEQCEHIPGGAMCA----GEGFNEEDGEGYVHIHAGIHGIGDIDAALYDWRNPVARIVIQK 219 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10899.778.1 >prot_Ecto-sp9_F_contig10899.778.1 ID=prot_Ecto-sp9_F_contig10899.778.1|Name=mRNA_Ecto-sp9_F_contig10899.778.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=138bp CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIback to top mRNA from alignment at Ecto-sp9_F_contig10899:2883..4287- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10899.778.1 ID=mRNA_Ecto-sp9_F_contig10899.778.1|Name=mRNA_Ecto-sp9_F_contig10899.778.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1405bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10899:2883..4287- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10899:2883..4287- >mRNA_Ecto-sp9_F_contig10899.778.1 ID=mRNA_Ecto-sp9_F_contig10899.778.1|Name=mRNA_Ecto-sp9_F_contig10899.778.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10899:2883..4287- (Ectocarpus species9 EcSCA_722f female)back to top |