mRNA_Ecto-sp9_F_contig10899.778.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10899.778.1
Unique NamemRNA_Ecto-sp9_F_contig10899.778.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z6_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 3.190e-94
Identity = 130/137 (94.89%), Postives = 131/137 (95.62%), Query Frame = 1
Query:    1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSKDYGWQNPVAVVVVSKA 411
            CGFAAP SKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFP GSCPSKHFPPAFDAGSETNNEKC CMPGRACP+ TRD RE HGRNSEGFIHVHRGFQGIGDLSKDYGWQNPVAVVVVSKA
Sbjct:   92 CGFAAPESKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPAGSCPSKHFPPAFDAGSETNNEKCTCMPGRACPKGTRDARERHGRNSEGFIHVHRGFQGIGDLSKDYGWQNPVAVVVVSKA 228          
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G405_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 4.490e-65
Identity = 102/138 (73.91%), Postives = 110/138 (79.71%), Query Frame = 1
Query:    1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSKA 411
            CGFA   ++G + PGKTW G+I FD NKCK+PVYSVVAKL NTNDAFMGI GSKF    CPSK FPPAFDAG+E NNEKC CMPGRACP S +  RE HGR SEGFIHVHRG  G+GDLSK DYGW NPVA VVVSKA
Sbjct:   80 CGFAV--AEGPLLPGKTWNGEITFDTNKCKEPVYSVVAKLTNTNDAFMGIDGSKF-LDKCPSKRFPPAFDAGTEKNNEKCTCMPGRACPASPKT-RENHGRGSEGFIHVHRGIDGVGDLSKADYGWNNPVAEVVVSKA 213          
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z4_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 3.890e-61
Identity = 100/138 (72.46%), Postives = 110/138 (79.71%), Query Frame = 1
Query:    1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSKA 411
            CGFAA  ++G + PGKTW G+I FD +KCK+PVYSVVAKL NTNDAFMGI GSKF     PSK FPPAFDAG+E NNEKC CMPGRACP S +  RE HG  SEGFIHVHRG  G+GDLSK DYGW+NPVA VVVSKA
Sbjct:  136 CGFAA--AEGPLLPGKTWNGEITFDTDKCKEPVYSVVAKLTNTNDAFMGIDGSKF-LDKHPSKLFPPAFDAGTEKNNEKCTCMPGRACPASPKS-RENHGLGSEGFIHVHRGINGVGDLSKADYGWKNPVAEVVVSKA 269          
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G413_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.530e-58
Identity = 95/137 (69.34%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSK 408
            CGFAA  ++G + PGKTW G+I FDANKCK PVYSVVAKL NTNDAFMGI GSKF     PSK FPPAFDAG+E NNEKC C+ GRACP S +    + GR SEGFIHVHRG  G+GDLS+ DY W+NPVA VVVSK
Sbjct:   65 CGFAA--AEGPLLPGKTWNGEITFDANKCKRPVYSVVAKLTNTNDAFMGIDGSKF-LDKRPSKLFPPAFDAGTEKNNEKCTCIRGRACPASPKPRENLGGRGSEGFIHVHRGINGVGDLSQADYDWKNPVAEVVVSK 198          
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Spondin (domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.010e-35
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPT-GSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIG-DLSK-DYGWQNPVAVVVVSK 408
            CG  A   +G +FPG+TW G +  D + C DPVYSVV+ L NTNDAF+GI        GS  SK FPPAFDAG+E NNE C  +PG ACP  + +  ++ G   E FIHVHRGF G+G DL + +Y W+NPVA V +++
Sbjct:   86 CGAVA--GEGPVFPGETWRGTLTIDESACPDPVYSVVSMLINTNDAFVGIDSDDLNVYGS--SKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDVPG---EEFIHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 217          
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Spondin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.720e-35
Identity = 65/137 (47.45%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSK 408
            CG     ++G +FPG+TW G++  D   C +PVYSVV  L NTNDAF+GI       GS  +K FPPAFDAG+E N+E+C+ +PG  CP  + + +   G   EG+IHVHRG  G+GDL +  Y W+NPVA + + K
Sbjct:   93 CGVVV--AEGPVFPGETWRGQLDVDPYICPNPVYSVVTMLINTNDAFVGIDSDTLELGS--TKAFPPAFDAGTEVNDERCSNIPGPGCPAGSGNNQNGPG---EGYIHVHRGVHGVGDLEEASYDWRNPVAEIYIQK 222          
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Spondin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 7.030e-29
Identity = 63/126 (50.00%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   34 IFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIG-DLSK-DYGWQNPVAVVVVS 405
            +FPG TW G +  D + C D  YSVV+ L NTNDAF+GI  ++        K FPPAFDAG+E NNE C  +PG ACP    D   +     EGFI V RGF G+G DL + +Y W+NPVA VVV+
Sbjct:   80 LFPGDTWRGVMTVDESICPDAQYSVVSMLINTNDAFVGIDSNRLVG---TEKVFPPAFDAGTEANNELCTHIPGPACPA---DSGNMEDGPGEGFISVSRGFHGVGPDLGEANYDWRNPVAEVVVA 199          
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G406_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.100e-23
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 1
Query:  214 GSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSKA 411
            G+E NNEKC+CMPGRA P S +  RE HGR SEGFIHVHRG +G+GDLS+ DY W+NPVA V VSKA
Sbjct:   16 GTEKNNEKCSCMPGRAWPASPKT-RENHGRGSEGFIHVHRGIKGVGDLSQADYDWKNPVAEVAVSKA 81          
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Spondin (domain-containing protein n=1 Tax=Nitrospira bacterium SG8_35_4 TaxID=1704025 RepID=A0A0S8ARA7_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 1.220e-17
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   22 SKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSKD-YGWQNPVAVVVVSK 408
            S GL+FPG+T   K        +    S+ A +  TND F+ + G + P G     +  PA+DAGSE N+E C+ +PG  C      G  I   + EG++ +H G  GIG L +  Y W+NPVA +V+ +
Sbjct:   97 SDGLLFPGET---KTIMIPQSERYRYISIAAMIIPTNDGFIALNGVQAPAGGNAVMYLSPAYDAGSEMNDELCDNIPGPVC-----GGEAISEEDGEGYVRIHEGIHGIGSLDESIYDWRNPVARIVIQR 218          
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Match: Spondin (domain-containing protein n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A353ZYF9_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 1.650e-17
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   22 SKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHGRNSEGFIHVHRGFQGIGDLSKD-YGWQNPVAVVVVSK 408
            S GL+ PG+T    ++  A +  D V S+ A L  TND F+ + G   P G     +  PA+DAGSE N+E+C  +PG A       G   +  + EG++H+H G  GIGD+    Y W+NPVA +V+ K
Sbjct:   97 SGGLLGPGET--ATVKIAAGRGFDYV-SLAAMLVPTNDGFIALNGVHAPLGHTAEMYLSPAYDAGSEMNDEQCEHIPGGAMCA----GEGFNEEDGEGYVHIHAGIHGIGDIDAALYDWRNPVARIVIQK 219          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10899.778.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.190e-9494.89protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.490e-6573.91protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.890e-6172.46protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.530e-5869.34protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Spondin5.010e-3551.08domain-containing protein n=3 Tax=Ectocarpus TaxID... [more]
Spondin5.720e-3547.45domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Spondin7.030e-2950.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized3.100e-2370.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Spondin1.220e-1736.15domain-containing protein n=1 Tax=Nitrospira bacte... [more]
Spondin1.650e-1738.46domain-containing protein n=1 Tax=Nitrospiraceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10899contigEcto-sp9_F_contig10899:2883..4287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue2e-28
Seed eggNOG ortholog2880.D7FIE5
EggNOG OGs28TMI@1,2S5Q9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size414
Cds size414
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10899.778.1prot_Ecto-sp9_F_contig10899.778.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10899 2883..4287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928310.6889863-CDS-Ecto-sp9_F_contig10899:2882..30821622928310.6889863-CDS-Ecto-sp9_F_contig10899:2882..3082Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10899 2883..3082 -
1692277830.7547886-CDS-Ecto-sp9_F_contig10899:2882..30821692277830.7547886-CDS-Ecto-sp9_F_contig10899:2882..3082Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10899 2883..3082 -
1622928310.7042787-CDS-Ecto-sp9_F_contig10899:3596..36891622928310.7042787-CDS-Ecto-sp9_F_contig10899:3596..3689Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10899 3597..3689 -
1692277830.7641692-CDS-Ecto-sp9_F_contig10899:3596..36891692277830.7641692-CDS-Ecto-sp9_F_contig10899:3596..3689Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10899 3597..3689 -
1622928310.7169187-CDS-Ecto-sp9_F_contig10899:4166..42871622928310.7169187-CDS-Ecto-sp9_F_contig10899:4166..4287Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10899 4167..4287 -
1692277830.7732008-CDS-Ecto-sp9_F_contig10899:4166..42871692277830.7732008-CDS-Ecto-sp9_F_contig10899:4166..4287Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10899 4167..4287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10899.778.1

>prot_Ecto-sp9_F_contig10899.778.1 ID=prot_Ecto-sp9_F_contig10899.778.1|Name=mRNA_Ecto-sp9_F_contig10899.778.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=138bp
CGFAAPGSKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGI
AGSKFPTGSCPSKHFPPAFDAGSETNNEKCNCMPGRACPESTRDGREIHG
RNSEGFIHVHRGFQGIGDLSKDYGWQNPVAVVVVSKA*
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mRNA from alignment at Ecto-sp9_F_contig10899:2883..4287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10899.778.1 ID=mRNA_Ecto-sp9_F_contig10899.778.1|Name=mRNA_Ecto-sp9_F_contig10899.778.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1405bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10899:2883..4287- (Ectocarpus species9 EcSCA_722f female)
TGTGGCTTTGCCGCGCCCGGGAGCAAGGGTTTGATCTTTCCCGGGAAGAC ATGGGAGGGCAAAATCCAGTTTGACGCGAACAAGTGCAAGGACCCCGTCT ACTCGGTGGTGGCCAAGCTCGGTGAGTTTTCGGAACACAGAAGACGACGC AGGTACCCATCGATAAGTCGATTCAGGAAAGTGAACTTCGATCCATATGA AAAACCTGGGGGCGTGTGAATGTTGCGAATGCGGCGCAATACGCCCATCT GGGAAGGGGCTGTCCGGTGGAATACGGCCTCAGAAGTGACTTGTGGATTT CAGTGGCACGGCGCCCCTTCAGAACGTTTGGCCTGTGGTTCGACCTACCA TCTTCGTCAAACCTGACCGAACACCGCCTCACCCCGCGTGATGGGTCGAG TCTACAACGTAGGTACCCTTCACCATTCCCGGGGATAGCGCTTAACTCAT TGATGCAATCGCGTGTCAATACTGTGCGTCCCTCCCCCCGTCCTTGTTCT GCGAGATGGTGTGTGTGCTCAAACCTGTGTTCGACGAAGCTGTTCAAAAA CGCAACCCACATTCCGATCGTCGCAACTGTCTGGTGAATTTTGCGCAGAC AACACCAACGACGCCTTCATGGGAATTGCTGGTTCCAAATTCCCCACGGG TAGTTGCCCGTCCAAGCACTTTCCCCCCGCCTTTGATGCCGGTAAGGAAC AGGAAATTTTCACACACAGTTGACACCAAGTTGTCGCGCACGTGAATCGG AAGCATTAGCTCTTGTCGAAAGCTTACGCCACACGGCCATGATGCTGTCG CTCTCGCCAATCAAAATTCTCCACAGTTGCAACCTACAGCTGCCGTTCCT CTGCCAAACGTTCACCTACCTGTCTGATGTTGATGTGTGTTCACACCACG TGTTGTGTGTTCACGCCACGGTCTGCGTGTACGTGTCACACATGGACCCT GGACCGCATGTCCCTTGCCGTGCTGTGGTTACCAACACGTCCCGACTCGG ATTAGTGAGTGTGTTCTCTGGGGAGCTTGCATCGGTTCTCCACCCCGGGG AGAAGCAGTCGAGATCCCCTCTTGCTAATACAGTGTAGTGAGACCCAATA ACCACAAGAATTGCCCACTACTGGTAGAAAAGCTCGAGCACACGAAGTGA GACCAAGCCGGAGACCCCAGTCACGACACCTTTGTCGCCCTGCCCCCTCC CAAAGGTTCCGAGACGAACAACGAGAAGTGTAACTGCATGCCGGGCCGGG CATGCCCCGAAAGCACCAGGGACGGCCGTGAAATTCACGGCAGAAACTCA GAGGGCTTCATCCACGTGCACCGAGGTTTCCAAGGCATTGGAGATCTCTC CAAAGACTACGGCTGGCAAAACCCGGTGGCGGTTGTTGTGGTCTCCAAGG CCTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10899:2883..4287-

>mRNA_Ecto-sp9_F_contig10899.778.1 ID=mRNA_Ecto-sp9_F_contig10899.778.1|Name=mRNA_Ecto-sp9_F_contig10899.778.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10899:2883..4287- (Ectocarpus species9 EcSCA_722f female)
TGTGGCTTTGCCGCGCCCGGGAGCAAGGGTTTGATCTTTCCCGGGAAGAC
ATGGGAGGGCAAAATCCAGTTTGACGCGAACAAGTGCAAGGACCCCGTCT
ACTCGGTGGTGGCCAAGCTCGTGTGGCTTTGCCGCGCCCGGGAGCAAGGG
TTTGATCTTTCCCGGGAAGACATGGGAGGGCAAAATCCAGTTTGACGCGA
ACAAGTGCAAGGACCCCGTCTACTCGGTGGTGGCCAAGCTCGACAACACC
AACGACGCCTTCATGGGAATTGCTGGTTCCAAATTCCCCACGGGTAGTTG
CCCGTCCAAGCACTTTCCCCCCGCCTTTGATGCCGACAACACCAACGACG
CCTTCATGGGAATTGCTGGTTCCAAATTCCCCACGGGTAGTTGCCCGTCC
AAGCACTTTCCCCCCGCCTTTGATGCCGGTTCCGAGACGAACAACGAGAA
GTGTAACTGCATGCCGGGCCGGGCATGCCCCGAAAGCACCAGGGACGGCC
GTGAAATTCACGGCAGAAACTCAGAGGGCTTCATCCACGTGCACCGAGGT
TTCCAAGGCATTGGAGATCTCTCCAAAGACTACGGCTGGCAAAACCCGGT
GGCGGTTGTTGTGGTCTCCAAGGCCTAAGTTCCGAGACGAACAACGAGAA
GTGTAACTGCATGCCGGGCCGGGCATGCCCCGAAAGCACCAGGGACGGCC
GTGAAATTCACGGCAGAAACTCAGAGGGCTTCATCCACGTGCACCGAGGT
TTCCAAGGCATTGGAGATCTCTCCAAAGACTACGGCTGGCAAAACCCGGT
GGCGGTTGTTGTGGTCTCCAAGGCCTAA
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