mRNA_Ecto-sp9_F_contig10891.774.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10891.774.1
Unique NamemRNA_Ecto-sp9_F_contig10891.774.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10891.774.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIG6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.870e-10
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  991 GAVLGVNTPFDRGKKLGWRRPGRVRLRPEQRG-IRW*RERGAETCWRKFEDLD 1146
            G VLGV TPFDRGK LG RRPGR+R R EQR  I W RE GA+ CWRK   LD
Sbjct:   70 GGVLGVETPFDRGKALGRRRPGRMRSRVEQRRRIWWPRELGAKACWRKTPRLD 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10891.774.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.870e-1067.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10891contigEcto-sp9_F_contig10891:1350..2495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1146
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10891.774.1prot_Ecto-sp9_F_contig10891.774.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10891 1466..2110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928310.3525305-UTR-Ecto-sp9_F_contig10891:1349..14651622928310.3525305-UTR-Ecto-sp9_F_contig10891:1349..1465Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10891 1350..1465 +
1692277830.5714612-UTR-Ecto-sp9_F_contig10891:1349..14651692277830.5714612-UTR-Ecto-sp9_F_contig10891:1349..1465Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10891 1350..1465 +
1622928310.3836532-UTR-Ecto-sp9_F_contig10891:2110..24951622928310.3836532-UTR-Ecto-sp9_F_contig10891:2110..2495Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10891 2111..2495 +
1692277830.5885746-UTR-Ecto-sp9_F_contig10891:2110..24951692277830.5885746-UTR-Ecto-sp9_F_contig10891:2110..2495Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10891 2111..2495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928310.366489-CDS-Ecto-sp9_F_contig10891:1465..21101622928310.366489-CDS-Ecto-sp9_F_contig10891:1465..2110Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10891 1466..2110 +
1692277830.5788393-CDS-Ecto-sp9_F_contig10891:1465..21101692277830.5788393-CDS-Ecto-sp9_F_contig10891:1465..2110Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10891 1466..2110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10891.774.1

>prot_Ecto-sp9_F_contig10891.774.1 ID=prot_Ecto-sp9_F_contig10891.774.1|Name=mRNA_Ecto-sp9_F_contig10891.774.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=215bp
MGSCQQMQDRGSQQWVPQRSFLPQKQQMARCGRSQQQEQQRQPFVRSSGT
SSTRRGCGAIAQQQPQQRGDPPCQQRPQQQQQQCFEPEPGTVAELRAKLA
QTAKELAQTAKKLEQVQAERAVIRVETAVIRAKRDPAEELVLLQKSELDA
AQRNGGDGGCSRPTGVGSGGGSAGDMLWHQRGIATHGRVVTVVTERCSPA
VVERTTPPTPPVQQ*
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mRNA from alignment at Ecto-sp9_F_contig10891:1350..2495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10891.774.1 ID=mRNA_Ecto-sp9_F_contig10891.774.1|Name=mRNA_Ecto-sp9_F_contig10891.774.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1146bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10891:1350..2495+ (Ectocarpus species9 EcSCA_722f female)
TGCCGTGTCGGCACGGCAGGCGGCAACATCTTACTCCAGCGGCTACACCC
GCCGCTGGATTTCAAGGACGCGGCGCAACTACGCGGCCGCAGCAACAGCA
GTAGAGGTTCCACCATATGGGTAGTTGCCAGCAGATGCAGGACCGGGGGA
GTCAGCAGTGGGTACCCCAACGAAGTTTTCTGCCGCAGAAACAGCAGATG
GCTCGATGTGGAAGGAGCCAGCAGCAGGAGCAGCAGCGCCAACCGTTTGT
CCGCAGCAGCGGGACCTCCTCGACACGACGTGGATGCGGCGCAATTGCGC
AGCAGCAGCCGCAGCAGCGAGGTGATCCTCCTTGCCAGCAACGACCGCAA
CAGCAACAACAGCAGTGTTTTGAGCCGGAACCTGGCACGGTGGCTGAACT
AAGAGCCAAACTAGCCCAGACGGCCAAGGAGCTAGCCCAAACCGCCAAGA
AGTTGGAGCAGGTGCAAGCAGAAAGAGCTGTTATTCGAGTAGAGACAGCT
GTTATTCGAGCAAAGAGAGATCCGGCGGAGGAACTGGTTCTACTGCAGAA
ATCCGAGCTTGATGCGGCCCAGCGCAATGGTGGTGATGGCGGTTGCAGCA
GGCCCACTGGTGTTGGATCTGGGGGTGGATCTGCTGGAGATATGTTGTGG
CATCAGCGGGGAATTGCTACTCATGGGCGTGTGGTGACGGTGGTGACGGA
ACGTTGCTCCCCAGCGGTGGTGGAGAGGACAACACCGCCCACACCACCTG
TGCAACAGTAGTCCCAGCACCCGGAAGTGACGAGGATGTCGCCTTTCAGG
GGCGAGAAACTGTACATCCGGCGGGAGGACGGGATAGAGCAGACAGATGG
TGGAGGATACGCCGAGGAGGTCGACGACAGGAACAGCAGCAGCAGCATCA
GCAGTGACGAAGGGCTGGATGTGGCCTGGTTTGGGGCACTGCTGCGCCCG
TTCGACCCGGGCAAACGGCGTCTGCTGATCGAGCAGAACGGGGGCGGTGC
TGGGGGTGAACACTCCTTTTGACCGTGGCAAAAAGTTGGGGTGGCGACGG
CCGGGGCGTGTGCGTTTGCGGCCGGAGCAACGGGGGATACGGTGGTGACG
AGAGCGGGGCGCCGAAACGTGTTGGCGGAAGTTTGAAGATCTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10891:1350..2495+

>mRNA_Ecto-sp9_F_contig10891.774.1 ID=mRNA_Ecto-sp9_F_contig10891.774.1|Name=mRNA_Ecto-sp9_F_contig10891.774.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1290bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10891:1350..2495+ (Ectocarpus species9 EcSCA_722f female)
ATGGGTAGTTGCCAGCAGATGCAGGACCGGGGGAGTCAGCAGTGGGTACC
CCAACGAAGTTTTCTGCCGCAGAAACAGCAGATGGCTCGATGTGGAAGGA
GCCAGCAGCAGGAGCAGCAGCGCCAACCGTTTGTCCGCAGCAGCGGGACC
TCCTCGACACGACGTGGATGCGGCGCAATTGCGCAGCAGCAGCCGCAGCA
GCGAGGTGATCCTCCTTGCCAGCAACGACCGCAACAGCAACAACAGCAGT
GTTTTGAGCCGGAACCTGGCACGGTGGCTGAACTAAGAGCCAAACTAGCC
CAGACGGCCAAGGAGCTAGCCCAAACCGCCAAGAAGTTGGAGCAGGTGCA
AGCAGAAAGAGCTGTTATTCGAGTAGAGACAGCTGTTATTCGAGCAAAGA
GAGATCCGGCGGAGGAACTGGTTCTACTGCAGAAATCCGAGCTTGATGCG
GCCCAGCGCAATGGTGGTGATGGCGGTTGCAGCAGGCCCACTGGTGTTGG
ATCTGGGGGTGGATCTGCTGGAGATATGTTGTGGCATCAGCGGGGAATTG
CTACTCATGGGCGTGTGGTGACGGTGGTGACGGAACGTTGCTCCCCAGCG
GTGGTGGAGAGGACAACACCGCCCACACCACCTGTGCAACAGTAGATGGG
TAGTTGCCAGCAGATGCAGGACCGGGGGAGTCAGCAGTGGGTACCCCAAC
GAAGTTTTCTGCCGCAGAAACAGCAGATGGCTCGATGTGGAAGGAGCCAG
CAGCAGGAGCAGCAGCGCCAACCGTTTGTCCGCAGCAGCGGGACCTCCTC
GACACGACGTGGATGCGGCGCAATTGCGCAGCAGCAGCCGCAGCAGCGAG
GTGATCCTCCTTGCCAGCAACGACCGCAACAGCAACAACAGCAGTGTTTT
GAGCCGGAACCTGGCACGGTGGCTGAACTAAGAGCCAAACTAGCCCAGAC
GGCCAAGGAGCTAGCCCAAACCGCCAAGAAGTTGGAGCAGGTGCAAGCAG
AAAGAGCTGTTATTCGAGTAGAGACAGCTGTTATTCGAGCAAAGAGAGAT
CCGGCGGAGGAACTGGTTCTACTGCAGAAATCCGAGCTTGATGCGGCCCA
GCGCAATGGTGGTGATGGCGGTTGCAGCAGGCCCACTGGTGTTGGATCTG
GGGGTGGATCTGCTGGAGATATGTTGTGGCATCAGCGGGGAATTGCTACT
CATGGGCGTGTGGTGACGGTGGTGACGGAACGTTGCTCCCCAGCGGTGGT
GGAGAGGACAACACCGCCCACACCACCTGTGCAACAGTAG
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