mRNA_Ecto-sp9_F_contig1089.773.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Match: Enoyl-CoA (hydratase/isomerase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS1_ECTSI) HSP 1 Score: 429 bits (1102), Expect = 4.540e-149 Identity = 218/229 (95.20%), Postives = 218/229 (95.20%), Query Frame = 1
Query: 1 PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEALAADGGDDPASVLGRFASGAGDPASSMLAQARPHHKRHNKRWIDEAFGGVPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEIEAGETVF 687
P VIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEALAADGGDDPASVLGRFASGAGDPASSMLAQ NKRWIDEAFGG PSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEIEAGETVF
Sbjct: 160 PETVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEALAADGGDDPASVLGRFASGAGDPASSMLAQ--------NKRWIDEAFGGAPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEIEAGETVF 380
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Match: 3-hydroxyisobutyryl-coenzyme (a hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS6_9STRA) HSP 1 Score: 171 bits (434), Expect = 4.800e-48 Identity = 105/228 (46.05%), Postives = 130/228 (57.02%), Query Frame = 1
Query: 1 PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEALAADGGDDPASVLGRFASGAGDPASSMLAQARPHHKRHNKRWIDEAFGGVPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEIEAGETV 684
P IGLFPDVG + VL+RLPGGLG Y+ L GARLR DLL+ GLATH V DR + L + ADG D P +L RF+S A + P + H ID FGG VE +V LR + G EW++ LE+L K SPTALKVTH +S A +L+ C DFR Q A DF EGVRA+L+DKD P W P LE V+ V+ F+ + A + V
Sbjct: 176 PETAIGLFPDVGASFVLARLPGGLGAYIALLGARLRACDLLYAGLATHCVAADRRAAL---IDADGRDVP-DILARFSS-----APXXXXKGGPVLEPHRDA-IDRCFGGKNGVEGVVAALR------AEGSEWSRATLEALLKMSPTALKVTHHQLSLARGLSLRGCFVNDFRASQRRAAAPDFVEGVRAVLVDKDGAPRWRPAALEDVSAQDVEGHFATLGAHDLV 387
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Match: 3-hydroxyisobutyryl-CoA (hydrolase n=1 Tax=Limimonas halophila TaxID=1082479 RepID=A0A1G7QHC6_9HYPH) HSP 1 Score: 166 bits (419), Expect = 4.430e-46 Identity = 103/231 (44.59%), Postives = 128/231 (55.41%), Query Frame = 1
Query: 1 PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEAL--AADGGDDPASVLGRFASGAGDPASSMLAQARPHHKRHNKRWIDEAFGGVPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEIEAGETVF 687
P IG FPDVG VLSRLPG LG YL LTGARL D ++ GLATH VP DR++ELEEAL AA D A+V A AGDP + LA+ R ID F SVE I+ L + G EWAQ +L + SP+++KVT I AA C+ ++R+ Q M DF EGVRA+L+DKDN PAW+P LE V D+ V F ++ + F
Sbjct: 148 PETAIGFFPDVGATWVLSRLPGQLGMYLALTGARLTAADAVYTGLATHYVPSDRMAELEEALPSAAFEDDAHAAVADVLADFAGDPGPAPLAEHR--------EAIDRCFAA-ESVEGILAALD------AEGSEWAQQTAATLRQRSPSSMKVTFAAIRAAADRDFDACMVTEYRLSQAMTARADFFEGVRAVLVDKDNSPAWNPARLEDVTDAEVARCFDPLDVPDLSF 363
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Match: 3-hydroxyisobutyryl-CoA (hydrolase, mitochondrial n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3AFK5_LUTLO) HSP 1 Score: 165 bits (417), Expect = 4.490e-46 Identity = 101/225 (44.89%), Postives = 130/225 (57.78%), Query Frame = 1
Query: 1 PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEAL---AADGGDDPASVLGRFASGAGDPASSMLAQARPHHKRHNKRWIDEAFGGVPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEI 666
P IGLFPDVG + L RL G LG +LGLTG RL+G D+ G+ATH R+ ELEEAL + DG D A+ L +F D + +L +H + IDE F G +VEEI+ RLR EWAQ L+ LAK SPT++KV+ + I A TL +CL ++R+ A + D EGVRALL+D+DNQP W+PPTLE V D RV F +
Sbjct: 126 PETAIGLFPDVGGGYFLPRLRGKLGMFLGLTGFRLKGRDVEKAGVATHYCESARIPELEEALTKCSTDG--DVAATLAKFCPK--DTSEFIL-------NKHLAQ-IDECFSGA-TVEEILERLR------KDNSEWAQKTLQGLAKMSPTSMKVSKKQIDLGANMTLPECLVMEYRLAVRHAQDSDLKEGVRALLVDRDNQPKWNPPTLEEVTDERVDSFFKPL 331
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Match: 3-hydroxyisobutyryl-CoA (hydrolase, mitochondrial (Fragment) n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2EC45_9DIPT) HSP 1 Score: 163 bits (413), Expect = 2.360e-45 Identity = 95/224 (42.41%), Postives = 126/224 (56.25%), Query Frame = 1
Query: 1 PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEALAADGGD-DPASVLGRFASGAGDPASSMLAQARPHHKRHNKRWIDEAFGGVPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEIE 669
P IGLFPDVG L RL G LG +LGLTG RL+G D+ G+ATH ++ ELE L D + A+ LG+F S + P I+E F G +VEEI+ RL+ EWA+G L++LAK SPT++KV+ + I A TL +CL ++R+ A + D EGVRALL+D+DNQP W+PPTLE V D RV F+ +E
Sbjct: 129 PETAIGLFPDVGGGFFLPRLRGKLGMFLGLTGVRLKGRDVEKSGVATHFCESAKIPELEAELCKCSSDQEVAATLGKFCS----------KDSTPFVLEQYMEQINECFSGA-TVEEILERLK------RDNSEWAKGILKTLAKMSPTSMKVSKKQIDLGANLTLPECLVMEYRLAVRHAKDSDLKEGVRALLVDRDNQPKWNPPTLEEVTDQRVDSFFAPLE 335
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Match: 3-hydroxyisobutyryl-CoA (hydrolase, mitochondrial n=7 Tax=Muscinae TaxID=43910 RepID=A0A1I8MUP3_MUSDO) HSP 1 Score: 162 bits (410), Expect = 1.200e-44 Identity = 94/223 (42.15%), Postives = 126/223 (56.50%), Query Frame = 1
Query: 1 PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEALA-ADGGDDPASVLGRFASGAGDPASSMLAQARPHHKRHNKRWIDEAFGGVPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEI 666
P IGLFPDVG ++ L RL G +G YLGLTG RL+G D+L G+ATH +LS+LE AL D+ +L +F S A+P I+ F G SVEEIV L+ G EWA L++++K SPT+LKVT R + + +L CL ++R++ N DF EGVRALLIDKD +P W+P TLE V + RVQ F+++
Sbjct: 160 PETAIGLFPDVGGSYFLPRLEGKIGLYLGLTGFRLKGEDVLKAGIATHFCESSKLSDLESALLNCPDADEVPEILSKFNS----------PSAKPFVLTPQMEQINNCFSG-ESVEEIVENLK------KDGSEWATKTLQTMSKMSPTSLKVTFRQLELGSKLSLPQCLNMEYRMVVRHLENSDFKEGVRALLIDKDQKPNWNPTTLEAVNEERVQSFFAKL 365
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Match: Hypothetical (protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SUW8_9SPIT) HSP 1 Score: 162 bits (410), Expect = 1.260e-44 Identity = 98/231 (42.42%), Postives = 124/231 (53.68%), Query Frame = 1
Query: 1 PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEALA-ADGGDDPASVLGRFASGAGDPASSMLAQARPHHKRHNKRWIDEAFGGVPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQH-MAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEIEAGETVF 687
P IGLFPDVG +H LS +PGGLG YL LTGARL DLL+ GLATH +P + L L DG A AG P +M+ H RH+ SVE I+ LR M EWA+G L++L K SPT+ KVT R + A TL++CL +FR Q M DF EG+RA L+DKD P W+PPT++GV+++ V E F + E F
Sbjct: 164 PETNIGLFPDVGASHFLSSMPGGLGTYLSLTGARLGAADLLYTGLATHYIPSSSIPSLLSKLELCDGAAHVEEACAMLAEDAGAPPLAMVRPQIDHCFRHD------------SVENILTELRAM-----DSSEWAEGTLKTLEKMSPTSCKVTLRLVRQAKGQTLENCLRAEFRACQRFMQQPSDFFEGIRAALVDKDKHPFWNPPTIDGVSEAAVNEYFVPLGERELEF 377
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Match: 3-hydroxyisobutyryl-CoA (hydrolase, mitochondrial n=7 Tax=Nyssorhynchus TaxID=44543 RepID=W5JCR8_ANODA) HSP 1 Score: 161 bits (408), Expect = 1.850e-44 Identity = 97/226 (42.92%), Postives = 126/226 (55.75%), Query Frame = 1
Query: 1 PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEAL-AADGGDDPASVLGRFASGAGDPASSMLAQARPHHKRHNKRWIDEAFGGVPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEIEAG 675
P IGLFPDVG + L RL G LG YLGLTG RL+G D+ G+ATH V LS LE+ L A + +VL RF+ +L + R + ID+ FG P+VEEI+ RL G EWAQ L+ L K SPT+L VT + + A LK CL ++R+ H A++ DF EGVRALLID+D +P W P TL V +RV++ F + G
Sbjct: 137 PETAIGLFPDVGGGYFLPRLEGKLGLYLGLTGFRLKGRDVFKAGVATHYVESKNLSALEQQLLATTSSTEVENVLERFSEKRDAGVEFVLEKQR--------KQIDQCFGA-PTVEEILKRLE------QDGSEWAQSTLKLLHKMSPTSLIVTQKQLELGAKMDLKTCLRMEYRLAVHHAIDSDFKEGVRALLIDRDQKPRWQPATLAEVDPARVEKFFGPLPDG 347
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Match: enoyl-CoA (hydratase/isomerase family protein n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D4CB0F) HSP 1 Score: 160 bits (405), Expect = 4.290e-44 Identity = 97/231 (41.99%), Postives = 131/231 (56.71%), Query Frame = 1
Query: 1 PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEALAADG--GDDPASVLGRFASGAGDPASSMLAQARPHHKRHNKRWIDEAFGGVPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFDEGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEIEAGETVF 687
P IGLFPDVG H L R PGG+G YLGLTG RL+G D++ G+ LVP DRL L +A+AA G D+ ++L A+ A D + LA RP ID F G SVE I+ L + G +WA+G L+ A+ +PT+LKVT + A +DC+ ++R+ Q DF EGVRALL+DKD P W+P TL+ V +RV+ F+ +AG+ F
Sbjct: 142 PETGIGLFPDVGGTHFLPRCPGGVGLYLGLTGERLKGADVVEAGVGDVLVPSDRLDSLVDAIAASGCGADEVMAILRAHAAPAAD---APLAALRPA--------IDRCFAGA-SVEAIMAALD------AEGTDWARGVLDIFARVAPTSLKVTLEAMRRGAALEFEDCMVMEYRLSQSFLAADDFYEGVRALLVDKDKNPRWNPATLDAVDAARVERYFATPKAGDLSF 354
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Match: ECH_2 (domain-containing protein n=2 Tax=Sorghum bicolor TaxID=4558 RepID=A0A1Z5RJZ9_SORBI) HSP 1 Score: 161 bits (408), Expect = 5.050e-44 Identity = 97/233 (41.63%), Postives = 135/233 (57.94%), Query Frame = 1
Query: 1 PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDRLSELEEALAADGGDDP---ASVLGRFASGAGDPASSMLAQARPHHKRHNKRWIDEAFGGVPSVEEIVLRLRGMVAEASGGREWAQGALESLAKASPTALKVTHRHISWAATTTLKDCLEQDFRVMQHMAMNGDFD----EGVRALLIDKDNQPAWSPPTLEGVADSRVQELFSEIEAGE 678
P +GLFPDVG ++ LSRLPG G+YLGL+GARL G ++L CGLATH VP +RL LEE+L +P S + +FA +S L + +K +KR ++E + S+EE+ L EW ++ L KASPT+LK++ R I T T+ +CL +++R++ H+ M GDF EG RA+L+DKD P W PP LE V D V+E FS I+ E
Sbjct: 171 PETALGLFPDVGASYFLSRLPGFYGEYLGLSGARLDGAEMLACGLATHFVPSNRLLLLEESLKKVNTSNPFVVGSTIDQFAQQPSLKENSSLNRMEIINKCFSKRTVEEI---ISSLEEVASDL---------ADEWVAATIQYLKKASPTSLKISLRSIREGRTQTVGECLHREYRMVCHV-MRGDFSPDFFEGCRAVLVDKDKNPMWMPPRLEQVHDKAVEEYFSRIDDPE 390 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1089.773.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1089.773.1 >prot_Ecto-sp9_F_contig1089.773.1 ID=prot_Ecto-sp9_F_contig1089.773.1|Name=mRNA_Ecto-sp9_F_contig1089.773.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=230bp PRPVIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVback to top mRNA from alignment at Ecto-sp9_F_contig1089:22870..26806- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1089.773.1 ID=mRNA_Ecto-sp9_F_contig1089.773.1|Name=mRNA_Ecto-sp9_F_contig1089.773.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3937bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1089:22870..26806- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1089:22870..26806- >mRNA_Ecto-sp9_F_contig1089.773.1 ID=mRNA_Ecto-sp9_F_contig1089.773.1|Name=mRNA_Ecto-sp9_F_contig1089.773.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1089:22870..26806- (Ectocarpus species9 EcSCA_722f female)back to top |