mRNA_Ecto-sp9_F_contig1089.771.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1089.771.1
Unique NamemRNA_Ecto-sp9_F_contig1089.771.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS2_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.560e-58
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
            MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGF+RRR GDLLAACDFE
Sbjct:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRAGDLLAACDFE 87          
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR8_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.520e-36
Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    4 SDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
            ++ + WEPL   DF+VLG V+TFQ VAL VCAHL++WRKWPPY+TKNVDVVIISTF+G+LW  +  I  G+IRR  GD+LAACDFE
Sbjct:    3 AEGEVWEPLSTPDFWVLGFVATFQAVALLVCAHLLRWRKWPPYVTKNVDVVIISTFSGVLWNVSMIISSGYIRREAGDILAACDFE 88          
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU03_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 5.970e-33
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
            MSD + WEPL M+D+ +LG V T Q  ALGVC HL+ WR WPPY+TKNVD+VI+ TFAG  WT   A+E G IRR  GD+LA C  E
Sbjct:    1 MSDEEVWEPLTMVDYTMLGFVGTVQAFALGVCVHLLIWRNWPPYVTKNVDIVIVMTFAGFAWTIAGALENGLIRRTEGDILAKCPLE 87          
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 7.870e-33
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
            MSD + WEPL M+D+ +LG+V TFQ +ALGVC HL  WR WPPY+TKNVD+VII TFAG  WT   A++VGF+ R  GDLLA C  E
Sbjct:    1 MSDEELWEPLTMVDYLMLGIVGTFQALALGVCVHLFLWRNWPPYVTKNVDIVIIMTFAGFAWTFANALDVGFVHRSKGDLLAECSLE 87          
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Similar (to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.590e-32
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
            MSD +PWEPL  +D+ +LGMV  FQ  ALGVC HL++WRKWPPY+TKNVD+VII T AG  WT   A+E G I R  GD LA C FE
Sbjct:    1 MSDEEPWEPLTFVDYVMLGMVGAFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTLAGFAWTFASALETGIIERSEGDFLANCYFE 87          
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Signal (transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.170e-30
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
            M D +PWEPL  +D+ +LG+V TFQ  ALGVC HL++WRKWPPY+TKNVD+VII TFAG  WT   A+  G I+R   D LA C FE
Sbjct:    1 MPDKEPWEPLAFVDYLMLGIVCTFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTFAGFAWTFAAAVGHGLIQRSEDDFLANCYFE 87          
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: RGS (domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.220e-28
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
            MSD + WEPL M+D+ +LG V T Q  ALGVC HL+ WR WPPY+TKNVD+VI+ TF G  WT + A++ G  RR  GD+LA C  E
Sbjct:    1 MSDEEVWEPLTMVDYIMLGFVGTVQAFALGVCVHLLSWRHWPPYVTKNVDIVIVMTFGGFGWTISVALDNGLFRRSEGDILAKCYLE 87          
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.610e-23
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
            M++++ WEPL   DF+VLG V+TFQ VAL VCAHL++WRKWPPY+TKNVDVVIIS  A  L T            R GD+LAACDFE
Sbjct:    1 MAEDEVWEPLSTPDFWVLGFVATFQTVALLVCAHLLRWRKWPPYVTKNVDVVIIS--AARLPTRQPG--------RPGDILAACDFE 77          
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Similar (to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 4.920e-23
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   49 VLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAAC 252
            +LGMV TFQ  ALGVC HL++WRKWPPY+TKNVD+VII T AG  WT   A++ G I R  GD LA C
Sbjct:    1 MLGMVGTFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTLAGFAWTFASALQSGLIPRNEGDFLAIC 68          
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU01_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.600e-23
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVII 162
            MSD +PWEPL M D+ +LG+V TFQ  ALGVC HL +WRKWPPY+TKNVD+VII
Sbjct:    1 MSDEEPWEPLTMADYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVII 54          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Uncharacterized1.560e-5897.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.520e-3666.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.970e-3359.77protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RGS7.870e-3362.07domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Similar1.590e-3262.07to regulator of G-protein signaling 16 n=1 Tax=Ect... [more]
Signal1.170e-3059.77transducer, putative n=1 Tax=Ectocarpus siliculosu... [more]
RGS2.220e-2856.32domain-containing protein n=3 Tax=Ectocarpus TaxID... [more]
RGS4.610e-2359.77domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Similar4.920e-2363.24to regulator of G-protein signaling 16 n=1 Tax=Ect... [more]
Uncharacterized6.600e-2370.37protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1089contigEcto-sp9_F_contig1089:17584..18298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue3.1e-27
Seed eggNOG ortholog2880.D7FTZ7
Preferred nameRGS1
KEGG koko:K16449
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_003140.1
Exons2
Model size261
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928310.152978-CDS-Ecto-sp9_F_contig1089:17583..176791622928310.152978-CDS-Ecto-sp9_F_contig1089:17583..17679Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1089 17584..17679 -
1692277830.5118628-CDS-Ecto-sp9_F_contig1089:17583..176791692277830.5118628-CDS-Ecto-sp9_F_contig1089:17583..17679Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1089 17584..17679 -
1622928310.170164-CDS-Ecto-sp9_F_contig1089:18133..182981622928310.170164-CDS-Ecto-sp9_F_contig1089:18133..18298Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1089 18134..18298 -
1692277830.5229456-CDS-Ecto-sp9_F_contig1089:18133..182981692277830.5229456-CDS-Ecto-sp9_F_contig1089:18133..18298Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1089 18134..18298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1089.771.1prot_Ecto-sp9_F_contig1089.771.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1089 17584..18298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1089.771.1

>prot_Ecto-sp9_F_contig1089.771.1 ID=prot_Ecto-sp9_F_contig1089.771.1|Name=mRNA_Ecto-sp9_F_contig1089.771.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=87bp
MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVD
VVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE
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mRNA from alignment at Ecto-sp9_F_contig1089:17584..18298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1089.771.1 ID=mRNA_Ecto-sp9_F_contig1089.771.1|Name=mRNA_Ecto-sp9_F_contig1089.771.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=715bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1089:17584..18298- (Ectocarpus species9 EcSCA_722f female)
ATGTCGGACAACCAGCCGTGGGAGCCGCTCGGCATGCTGGACTTCTTCGT CCTGGGCATGGTTTCCACCTTCCAGCTCGTGGCGCTGGGCGTTTGCGCCC ACCTCGTCAAGTGGCGGAAGTGGCCCCCCTACCTCACCAAGAACGTCGAC GTCGTCATCATCTCGGTGAGTTAGTCGCTCCTCAACTCTTGGTTGTGGTT GGCTTGAGACGTTAGCTGGTGGTGCGCGGGGGTGGAGTTGGCTCGATGCG ATCAGCGGCGGCGGGGGGGGGGGCCTCCGGAGCCGTCGTGGTGGACTTGG TGGTTGCTTGTGCCTCGGGCAAGCGGTGTTCGTTGTTGGTGAAGTGCTGG CGATTGTCGTCGGTTTCTGCTGGACGAGGACTTGGAACAGCTCTCCCGTG TCTGTTTTCAAGTTTGTGCGAAGTATCGAAAAAAATCTAAATAGGGATCT CAACGATACACATCAGCCAAAAAACCATTTCGATCCAGCTCACATCCCGC CCGTTGCCGTTGCTGCTGAAGCCTTTCCGTTCCGCGTCTTCATTGCCGCG CTGCCGCCCGCCCCGTTGCCTGCCGGCCTGTCGGTCTCCCCGCCGCTTTA TTTTTTGGGTTTTCTGCAGACTTTCGCGGGCATTCTCTGGACAGCCACGA AGGCGATCGAAGTGGGGTTTATTCGGAGGAGGGTGGGCGATCTGTTGGCC GCCTGCGACTTTGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1089:17584..18298-

>mRNA_Ecto-sp9_F_contig1089.771.1 ID=mRNA_Ecto-sp9_F_contig1089.771.1|Name=mRNA_Ecto-sp9_F_contig1089.771.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1089:17584..18298- (Ectocarpus species9 EcSCA_722f female)
ATGTCGGACAACCAGCCGTGGGAGCCGCTCGGCATGCTGGACTTCTTCGT
CCTGGGCATGGTTTCCACCTTCCAGCTCGTGGCGCTGGGCGTTTGCGCCC
ACCTCGTCAAGTGGCGGAAGTGGCCCCCCTACCTCACCAAGAACGTCGAC
GTCGTCATCATCTCGATGTCGGACAACCAGCCGTGGGAGCCGCTCGGCAT
GCTGGACTTCTTCGTCCTGGGCATGGTTTCCACCTTCCAGCTCGTGGCGC
TGGGCGTTTGCGCCCACCTCGTCAAGTGGCGGAAGTGGCCCCCCTACCTC
ACCAAGAACGTCGACGTCGTCATCATCTCGACTTTCGCGGGCATTCTCTG
GACAGCCACGAAGGCGATCGAAGTGGGGTTTATTCGGAGGAGGGTGGGCG
ATCTGTTGGCCGCCTGCGACTTTGAGACTTTCGCGGGCATTCTCTGGACA
GCCACGAAGGCGATCGAAGTGGGGTTTATTCGGAGGAGGGTGGGCGATCT
GTTGGCCGCCTGCGACTTTGAG
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