mRNA_Ecto-sp9_F_contig1089.771.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS2_ECTSI) HSP 1 Score: 183 bits (465), Expect = 1.560e-58 Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1
Query: 1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGF+RRR GDLLAACDFE
Sbjct: 1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRAGDLLAACDFE 87
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR8_ECTSI) HSP 1 Score: 132 bits (331), Expect = 1.520e-36 Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = 1
Query: 4 SDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
++ + WEPL DF+VLG V+TFQ VAL VCAHL++WRKWPPY+TKNVDVVIISTF+G+LW + I G+IRR GD+LAACDFE
Sbjct: 3 AEGEVWEPLSTPDFWVLGFVATFQAVALLVCAHLLRWRKWPPYVTKNVDVVIISTFSGVLWNVSMIISSGYIRREAGDILAACDFE 88
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU03_ECTSI) HSP 1 Score: 119 bits (298), Expect = 5.970e-33 Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
MSD + WEPL M+D+ +LG V T Q ALGVC HL+ WR WPPY+TKNVD+VI+ TFAG WT A+E G IRR GD+LA C E
Sbjct: 1 MSDEEVWEPLTMVDYTMLGFVGTVQAFALGVCVHLLIWRNWPPYVTKNVDIVIVMTFAGFAWTIAGALENGLIRRTEGDILAKCPLE 87
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI) HSP 1 Score: 126 bits (317), Expect = 7.870e-33 Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1
Query: 1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
MSD + WEPL M+D+ +LG+V TFQ +ALGVC HL WR WPPY+TKNVD+VII TFAG WT A++VGF+ R GDLLA C E
Sbjct: 1 MSDEELWEPLTMVDYLMLGIVGTFQALALGVCVHLFLWRNWPPYVTKNVDIVIIMTFAGFAWTFANALDVGFVHRSKGDLLAECSLE 87
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Similar (to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.590e-32 Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
MSD +PWEPL +D+ +LGMV FQ ALGVC HL++WRKWPPY+TKNVD+VII T AG WT A+E G I R GD LA C FE
Sbjct: 1 MSDEEPWEPLTFVDYVMLGMVGAFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTLAGFAWTFASALETGIIERSEGDFLANCYFE 87
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Signal (transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI) HSP 1 Score: 121 bits (304), Expect = 1.170e-30 Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
M D +PWEPL +D+ +LG+V TFQ ALGVC HL++WRKWPPY+TKNVD+VII TFAG WT A+ G I+R D LA C FE
Sbjct: 1 MPDKEPWEPLAFVDYLMLGIVCTFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTFAGFAWTFAAAVGHGLIQRSEDDFLANCYFE 87
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: RGS (domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE) HSP 1 Score: 115 bits (287), Expect = 2.220e-28 Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
MSD + WEPL M+D+ +LG V T Q ALGVC HL+ WR WPPY+TKNVD+VI+ TF G WT + A++ G RR GD+LA C E
Sbjct: 1 MSDEEVWEPLTMVDYIMLGFVGTVQAFALGVCVHLLSWRHWPPYVTKNVDIVIVMTFGGFGWTISVALDNGLFRRSEGDILAKCYLE 87
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE) HSP 1 Score: 101 bits (251), Expect = 4.610e-23 Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAACDFE 261
M++++ WEPL DF+VLG V+TFQ VAL VCAHL++WRKWPPY+TKNVDVVIIS A L T R GD+LAACDFE
Sbjct: 1 MAEDEVWEPLSTPDFWVLGFVATFQTVALLVCAHLLRWRKWPPYVTKNVDVVIIS--AARLPTRQPG--------RPGDILAACDFE 77
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Similar (to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI) HSP 1 Score: 100 bits (248), Expect = 4.920e-23 Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 49 VLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFIRRRVGDLLAAC 252
+LGMV TFQ ALGVC HL++WRKWPPY+TKNVD+VII T AG WT A++ G I R GD LA C
Sbjct: 1 MLGMVGTFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTLAGFAWTFASALQSGLIPRNEGDFLAIC 68
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU01_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 6.600e-23 Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1
Query: 1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVII 162
MSD +PWEPL M D+ +LG+V TFQ ALGVC HL +WRKWPPY+TKNVD+VII
Sbjct: 1 MSDEEPWEPLTMADYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVII 54 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1089.771.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1089.771.1 >prot_Ecto-sp9_F_contig1089.771.1 ID=prot_Ecto-sp9_F_contig1089.771.1|Name=mRNA_Ecto-sp9_F_contig1089.771.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=87bp MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDback to top mRNA from alignment at Ecto-sp9_F_contig1089:17584..18298- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1089.771.1 ID=mRNA_Ecto-sp9_F_contig1089.771.1|Name=mRNA_Ecto-sp9_F_contig1089.771.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=715bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1089:17584..18298- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1089:17584..18298- >mRNA_Ecto-sp9_F_contig1089.771.1 ID=mRNA_Ecto-sp9_F_contig1089.771.1|Name=mRNA_Ecto-sp9_F_contig1089.771.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1089:17584..18298- (Ectocarpus species9 EcSCA_722f female)back to top |