mRNA_Ecto-sp9_F_contig10889.768.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L5_ECTSI) HSP 1 Score: 404 bits (1039), Expect = 4.010e-125 Identity = 229/345 (66.38%), Postives = 230/345 (66.67%), Query Frame = 1
Query: 1 VRTGGVLGTLAGGAAAVRGLASKKAMDTSMPAMTTSKPVFQGFLMKRRETGNWQRRWCVLTERDMEYYHSRQDHVKGKRPAKSVSLASALLKKSGPPPALPPRPGAEPSGGGGIGVGSLGLGPTSISGGFGSNGSSGXXXXXXXXXXXGPRAAFPPVSPRVGPGAAVGAKGKGKGKSAPDLAHCFELHSGKLLGDKRNREGRLYFKALSEEELYSWMVPLRVLVGSHNLVRTGAAGSMCYVDVARRVELVNMRNRAGETPLHYSAKGEGKAERDAIGRVQIATWLVENGSAVNAADKGGSTALHVAVRRGHVPLAAALVRRGGDLTVVDRHGRSPLELVNRDQDV 1035
VRTGGVLGTLAGGAAAVRGLASK AMDTSMPAMTTSKPVFQGFLMKRRETGNWQRRWCVLTERDMEYYHSRQ G+GKGKSAPDLAHCFELHSGKLLGDKRNREGRLYFKALSEEELYSWMVPLRVLVGSHNLVRTGAAGSMCYVDVARRVELVNMRNRAGETPLHYSAKGEGKAERDAIGRVQIATWLVENGS VNAADKGGSTALHVAVRRGHVPLAA GRSPLELVNRDQDV
Sbjct: 1414 VRTGGVLGTLAGGAAAVRGLASK-AMDTSMPAMTTSKPVFQGFLMKRRETGNWQRRWCVLTERDMEYYHSRQ--------------------------------------------------------------------------------------------------GRGKGKSAPDLAHCFELHSGKLLGDKRNREGRLYFKALSEEELYSWMVPLRVLVGSHNLVRTGAAGSMCYVDVARRVELVNMRNRAGETPLHYSAKGEGKAERDAIGRVQIATWLVENGSEVNAADKGGSTALHVAVRRGHVPLAAXXXXXXXXXXXXXXXGRSPLELVNRDQDV 1659
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL8_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.070e-46 Identity = 123/339 (36.28%), Postives = 160/339 (47.20%), Query Frame = 1
Query: 82 TSMPAMTTSKPVFQGFLMKRRETGNWQRRWCV-LTERDMEYYHSRQ----------DHVKGKRPAKSVSLASALLKKSGPPPALPPRPGAEPSGGGGIGVGSLGLGPTSISGGFGSNGSSGXXXXXXXXXXXGPRAAFPPVSPRVGPGAAVGAKGKGKGKSAPDLAHCFELHSGKLLGDKRNREGRLYFKALS------EEELYSWMVPLRVLVGSHNLVRTGAAGSMCYVDVARRVELVNMRNRAGETPLHYSAK----GEGKAERDAIGRVQIATWLVENGSAVNAADKGGSTALHVAVRRGHVPLAAALVRRGGDLTVVDRHGRSPLELVNRDQDV 1035
T A+T + V G+L KRRETG WQRRWCV + + YYHS++ DH+ + PA + L A+L K P P PR + CF ++S +LL KRN+EGRLYFKA S E+ Y+W+VPLRVL HNL + A G YVD RR ELV N+ ETPLH++A+ G+ AE A+ RVQI +WLVENG+ +NAA G T LH A+ GH+ LAAAL RRGGDL++ R G S L+L+ R +D+
Sbjct: 1136 TGSGAITGAAIVHAGWLDKRRETGRWQRRWCVAFADGSLNYYHSQKVGGVGAARDGDHMAERPPANRLHLERAMLHKCADPEV--------------------------------------------------------PNDPR---------------------SACFAIYSQELLRSKRNKEGRLYFKATSGKFFESSEDAYAWLVPLRVLCKDHNLGVSQAQGITRYVDPERRRELVRALNKYHETPLHFAARSSDTGDTGAESQAVARVQIGSWLVENGAEINAASVSGETPLHAAIAHGHLALAAALARRGGDLSLKTRAGTSCLDLLQRPEDL 1397
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEI3_9STRA) HSP 1 Score: 110 bits (274), Expect = 9.150e-23 Identity = 88/285 (30.88%), Postives = 121/285 (42.46%), Query Frame = 1
Query: 121 QGFLMKRRETGNWQRRWCVLTERDMEYYHSRQDHVKGKRPAKSVSLASALLKKSGPPPALPPRPGAEPSGGGGIGVGSLGLGPTSISGGFGSNGSSGXXXXXXXXXXXGPRAAFPPVSPRVGPGAAVGAKGKGKGKSAPDLAHCFELHSGKLLGDKRNREGRLYFKALSEEELYSWMVPLRVLVGSHNLVRTGAAGS-----MCYVDVARRVELVNMRNRAGETPLHYSA---KGEGKAERDAIGR-VQIATWLVENGSAVNAADKGGSTALHVAVRRGHVPLAA 948
QG+L KRRET WQ+RWCVLT +++YYH V K+P+K V L A++KKS P FE+HS LL D+RNREGR+YFKA SE EL +W+ PLRV++ S GS M Y+D R +++++++ AG + LH +A K +A R VQ+A WLVENG + AD+ G LH+A ++ AA
Sbjct: 643 QGWLKKRRETDRWQKRWCVLTNTELKYYH----RVASKKPSKVVDLTGAIVKKSEQQP------------------------------------------------------------------------------------FTFEIHSPLLL-DRRNREGRIYFKASSEIELQAWLAPLRVVLAS-------CGGSIQQREMFYIDAELRKKILSVKDGAGRSLLHRAADVMKPSQEASEVFNSRLVQLACWLVENGCNPDQADQRGCAPLHIATSACNLEFAA 831
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Match: Myosin-like (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGA5_PYTIN) HSP 1 Score: 94.0 bits (232), Expect = 2.970e-17 Identity = 52/146 (35.62%), Postives = 79/146 (54.11%), Query Frame = 1
Query: 526 KSAPDLAHCFELHSGKLLGDKRNREGRLYFKALSEEELYSWMVPLRVLVGSHNLVRTGAAGSMCYVDVARRVELVNMRNRAGETPLHYSAKGEGKAERDAIGRVQIATWLVENGSAVNAADKGGSTALHVAVRRGHVPLAAALVRR 963
K + +CFE+HS +L K N EG + F A +E+E++ WM +R + G + +M VD + R E VNM+N+AG TPLH + + E + + ++ WL+ENG+ NAAD G T LH AV L L+++
Sbjct: 1651 KRISHVDNCFEIHSPRLKSSK-NPEGMMSFVADTEQEVHEWMAAIRKVHGVRIATMSPPFQNMICVDTSLRREYVNMKNKAGFTPLHLAVQNE---DDEGFEAAKVCVWLIENGADPNAADANGDTPLHYAVMLNRYDLVETLMKK 1792
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJJ8_PYTOL) HSP 1 Score: 85.9 bits (211), Expect = 1.440e-14 Identity = 50/159 (31.45%), Postives = 79/159 (49.69%), Query Frame = 1
Query: 550 CFELHSGKLLGDKRNREGRLYFKALSEEELYSWMVPLRVLVGSHNLVRTGAAGSMCYVDVARRVELVNMRNRAGETPLHYSAKGEGKAERDAIGRVQIATWLVENGSAVNAADKGGSTALHVAVRRGHVPLAAALVRRGGDLTVVDRHGRSPLELVNRD 1026
CFE++S +L K N +G + F A +EEE++ WM +R + G +M +D + R E +NM+N+AG TPLH + + + + + ++ WLVENG+ NA D G T LH AV L L+++ P+E+ D
Sbjct: 1517 CFEIYSPRLKCSK-NPDGIVSFVADTEEEVHEWMAAIRKVPGVRVKTSIPPFQNMICIDTSLRREYMNMKNKAGFTPLHLAVQND---DDEGFEAAKVCVWLVENGADPNAFDNNGDTPLHFAVMLNRYDLVETLMKKXXXXXXXXXXXLDPVEVAEED 1671
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phreatobacter sp. NMCR1094 TaxID=2570229 RepID=A0A4D7QSU8_9HYPH) HSP 1 Score: 59.7 bits (143), Expect = 3.850e-6 Identity = 35/90 (38.89%), Postives = 46/90 (51.11%), Query Frame = 1
Query: 748 VNMRNRAGETPLHYSAKGEGKAERDAIGRVQIATWLVENGSAVNAADKGGSTALHVAVRRGHVPLAAALVRRGGDLTVVDRHGRSPLELV 1017
V R G T LH + G G VQ+ T+LVE G A+NA ++ G T LHVA AA L+ G D T+ D GR P++L+
Sbjct: 515 VQARATDGSTLLHNFIRKSGPYPLQEPG-VQMVTFLVERGVAINAVNRAGRTVLHVAAETSEASTAATLIALGADKTIADAAGRRPVDLL 603
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Match: ankyrin (repeat domain-containing protein n=2 Tax=Endozoicomonas acroporae TaxID=1701104 RepID=UPI000C7834AB) HSP 1 Score: 58.9 bits (141), Expect = 7.120e-6 Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 1
Query: 751 NMRNRAGETPLHYSAKG-EGKAERDAIGRVQIATWLVENGSA-VNAADKGGSTALHVAVRRGHVPLAAALVRRGGDLTVVDRHGRSPLELVNR 1023
N+RN G T LHY+ + + D R+ I L+ENG +NA +KGG+TALH+A +G + + L+ RG D ++D + + NR
Sbjct: 522 NLRNIDGNTALHYAVSAPDWDYQVDWTVRLAILADLIENGEVEINAQNKGGATALHIAASQGSIDMIRELLMRGADFNILDEKKMTAFDHCNR 614
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IZY6_9HYME) HSP 1 Score: 58.9 bits (141), Expect = 8.530e-6 Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 1
Query: 751 NMRNRAGETPLHYSAKGEGKAERDAIGRVQIATWLVENGSAVN------AADKGGSTALHVAVRRGHVPLAAALVRRGGDLTVVDRHGRSPLELVN 1020
N+ N G TPLH + E V + L E G N A DK G TALH+A+ RGH +A L+RRG DL + + G +PL L++
Sbjct: 756 NLTNAEGRTPLHVICQREDDD-------VDLVKMLFEMGDKFNKPIQVDARDKSGCTALHLALNRGHQQIAEWLLRRGADLNLANAKGSTPLHLIS 844
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Match: Ankyrin (repeat n=1 Tax=Ferrimonas marina TaxID=299255 RepID=A0A1M5MXV5_9GAMM) HSP 1 Score: 58.2 bits (139), Expect = 1.190e-5 Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 760 NRAGETPLHYSAKGEGKAERDAIGRVQIATWLVENGSAVNAADKGGSTALHVAVRRGHVPLAAALVRRGGDLTVVDRHGRSPL 1008
N+ G+TPL +A+ AE ++ A WL+++ A++A D+GG TALH+A+ H LA L+ +G + DR G++PL
Sbjct: 246 NQQGQTPLMVAAELNDGAEA-----LRWANWLLDSKVALSARDRGGQTALHLALENNHHQLAGRLLAKGAQVNPADRLGQTPL 323
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Match: ANK3 (protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z7Q4_BRALA) HSP 1 Score: 58.5 bits (140), Expect = 1.200e-5 Identity = 48/138 (34.78%), Postives = 64/138 (46.38%), Query Frame = 1
Query: 658 LRVLVGSHNLVRTGAAGSMCYVDVARRVELVNMRNRAGETPLHYSAKGEGKAERDAIGRVQIATW-----------LVENGSAVNAADKGGSTALHVAVRRGHVPLAAALVRRGGDLTV-VDRHGRSPLELVNRDQDV 1035
L V++ S +LVR C + + V N N AGE PLHY G A + IAT LV++G+ +NA+DK G TALHVA RG + LV+ G D+ V G +PL L +V
Sbjct: 144 LAVIMRSEDLVR-------CLLQLGANV---NSTNEAGERPLHYVFTGMPPNPSHATRKTPIATKDRNVTDLVFAALVDSGADLNASDKQGFTALHVAAERGCLEEVQTLVKAGADINVQTPVTGLTPLSLAKHANNV 271 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10889.768.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10889.768.1 >prot_Ecto-sp9_F_contig10889.768.1 ID=prot_Ecto-sp9_F_contig10889.768.1|Name=mRNA_Ecto-sp9_F_contig10889.768.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=345bp VRTGGVLGTLAGGAAAVRGLASKKAMDTSMPAMTTSKPVFQGFLMKRRETback to top mRNA from alignment at Ecto-sp9_F_contig10889:188..4138+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10889.768.1 ID=mRNA_Ecto-sp9_F_contig10889.768.1|Name=mRNA_Ecto-sp9_F_contig10889.768.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3951bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10889:188..4138+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10889:188..4138+ >mRNA_Ecto-sp9_F_contig10889.768.1 ID=mRNA_Ecto-sp9_F_contig10889.768.1|Name=mRNA_Ecto-sp9_F_contig10889.768.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2070bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10889:188..4138+ (Ectocarpus species9 EcSCA_722f female)back to top |