mRNA_Ecto-sp9_F_contig10875.763.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10875.763.1
Unique NamemRNA_Ecto-sp9_F_contig10875.763.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10875.763.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY9_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 3.370e-118
Identity = 188/193 (97.41%), Postives = 191/193 (98.96%), Query Frame = 1 
Query:    1 VEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPRFMDGLTNEQICLLPAACVGDSICRLQESGTEESPAYDFHTATDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFIRILADQSGLPDTRTDQELEDFFDQTDKRVRTAVLNGLLRTLSPSDIARGAF 579
            VEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVP FMDGLTNEQICLLPAACVGDSICRLQESGTEESPAYDF+TATDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLLALVVLLN+ALPEGLSCPGSLHFIRILADQSGL DTRTDQELE+FFDQTDKRVRTAVLNGLLRTLSPSDIARGAF
Sbjct:  829 VEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGFMDGLTNEQICLLPAACVGDSICRLQESGTEESPAYDFNTATDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLLALVVLLNEALPEGLSCPGSLHFIRILADQSGLSDTRTDQELENFFDQTDKRVRTAVLNGLLRTLSPSDIARGAF 1021
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BLAST of mRNA_Ecto-sp9_F_contig10875.763.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFU0_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 7.140e-103
Identity = 156/166 (93.98%), Postives = 158/166 (95.18%), Query Frame = 1 
Query:    1 VEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPRFMDGLTNEQICLLPAACVGDSICRLQESGTEESPAYDFHTATDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFIRILADQSGLPDTRTDQELEDFFDQ 498
            VEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVP FMDGLTNEQICLLPAACVGDSICRL ESGTEESPA DF+T TDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQL ALVVLLN+ALPEGLSCP SLHFIRILADQSGL  TRTDQELEDFFDQ
Sbjct:   13 VEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGFMDGLTNEQICLLPAACVGDSICRLLESGTEESPACDFNTVTDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLFALVVLLNNALPEGLSCPESLHFIRILADQSGLCGTRTDQELEDFFDQ 178
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BLAST of mRNA_Ecto-sp9_F_contig10875.763.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL9_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.780e-57
Identity = 117/193 (60.62%), Postives = 124/193 (64.25%), Query Frame = 1 
Query:    1 VEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPRFMDGLTNEQICLLPAACVGDSICRLQESGTEESPAYDFHTATDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFIRILADQSGLPDTRTDQELEDFFDQTDKRVRTAVLNGLLRTLSPSDIARGAF 579
            +EEGQAKWALSVIGKIADAIDAPTHTVTLAA+TLGVAGGVP  MD L+NEQI LLPAACV DSICRLQESGTEESPAYD + ATDAML ITKTSSEGRGDGG+                                                          + F+QTDKRVRTAVL  LLRTLSPSDIARGAF
Sbjct:  710 LEEGQAKWALSVIGKIADAIDAPTHTVTLAAITLGVAGGVPGLMDALSNEQIYLLPAACVADSICRLQESGTEESPAYDLNRATDAMLTITKTSSEGRGDGGA---------------------------------------------------------RELFNQTDKRVRTAVLEDLLRTLSPSDIARGAF 845
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BLAST of mRNA_Ecto-sp9_F_contig10875.763.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P3_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.380e-49
Identity = 100/193 (51.81%), Postives = 128/193 (66.32%), Query Frame = 1 
Query:    1 VEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPRFMDGLTNEQICLLPAACVGDSICRLQESGTEESPAYDFHTATDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFIRILADQSGLPDTRTDQELEDFFDQTDKRVRTAVLNGLLRTLSPSDIARGAF 579
            + EG+ +WALSVI +I D I+ PT  V LAA+TLGV   +P F+   ++E +CLLPAACV  +I RL +   +ES + D +   D MLAITK +SEGRG  G  +FG+    D KT LLAL   L   LPE L+CPG + ++ + A+QSGL  T T QEL   +D+ D+ VR   LNGLLRTLSPSDIARGAF
Sbjct:  859 IPEGKVRWALSVIREITDTINVPTPIVALAAITLGVTAAIPGFLSRRSDEDLCLLPAACVSHAISRLDK--LDES-SVDLYGIMDQMLAITKAASEGRGKNGGPVFGQPGAGDPKTILLALFFYLMLTLPEELTCPGPMDYMEVFAEQSGLDHTLTGQELGCVYDEYDRFVRAVALNGLLRTLSPSDIARGAF 1048
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BLAST of mRNA_Ecto-sp9_F_contig10875.763.1 vs.
Match: N/a (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D9_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 4.940e-27
Identity = 61/115 (53.04%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:  235 DFHTATDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFIRILADQSGLPDTRTDQELEDFFDQTDKRVRTAVLNGLLRTLSPSDIARGAF 579
            D +   D ML ITK +SEGRG  G  +FG+   +D KT LLAL   L   +PE L+CPG + ++ + A+QSG+  T T QEL   +D+ D+ VR A LNGLLRTLSPSDIARGAF
Sbjct:  815 DLYGTMDQMLVITKAASEGRGKNGGPVFGQPGADDPKTILLALFYYLMLTMPEELTCPGPMDYMEVFAEQSGIDHTLTGQELGGVYDEYDRFVRAAALNGLLRTLSPSDIARGAF 929
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10875.763.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized3.370e-11897.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.140e-10393.98protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.780e-5760.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Protein1.380e-4951.81kinase domain-containing protein n=2 Tax=Ectocarpu... [more]
N/a4.940e-2753.04n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10875contigEcto-sp9_F_contig10875:3726..4306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_000950.1
Exons1
Model size581
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928309.411158-CDS-Ecto-sp9_F_contig10875:3727..43061622928309.411158-CDS-Ecto-sp9_F_contig10875:3727..4306Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10875 3728..4306 -
1692277830.2156327-CDS-Ecto-sp9_F_contig10875:3727..43061692277830.2156327-CDS-Ecto-sp9_F_contig10875:3727..4306Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10875 3728..4306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10875.763.1prot_Ecto-sp9_F_contig10875.763.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10875 3728..4306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10875.763.1

>prot_Ecto-sp9_F_contig10875.763.1 ID=prot_Ecto-sp9_F_contig10875.763.1|Name=mRNA_Ecto-sp9_F_contig10875.763.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=193bp
VEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPRFMDGLTNE
QICLLPAACVGDSICRLQESGTEESPAYDFHTATDAMLAITKTSSEGRGD
GGSDIFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFIRILADQSG
LPDTRTDQELEDFFDQTDKRVRTAVLNGLLRTLSPSDIARGAF
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mRNA from alignment at Ecto-sp9_F_contig10875:3726..4306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10875.763.1 ID=mRNA_Ecto-sp9_F_contig10875.763.1|Name=mRNA_Ecto-sp9_F_contig10875.763.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=581bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10875:3726..4306- (Ectocarpus species9 EcSCA_722f female)
GTTGAGGAAGGCCAGGCTAAGTGGGCTCTGTCGGTCATCGGGAAGATCGC
GGACGCGATCGATGCGCCGACGCACACCGTCACGCTTGCGGCCATGACCC
TCGGAGTGGCCGGCGGCGTGCCGAGATTCATGGACGGGCTGACCAATGAA
CAGATCTGCCTTCTCCCCGCGGCGTGCGTAGGGGACTCCATCTGTCGACT
GCAAGAATCTGGGACTGAAGAGAGCCCCGCCTATGACTTCCACACGGCGA
CAGACGCGATGCTGGCGATCACGAAGACCTCGTCGGAGGGCAGGGGTGAC
GGCGGTAGCGACATATTTGGCGAGACAAGCGATGAAGACGCCAAGACTCA
GTTGCTCGCTCTCGTCGTCCTCCTGAACGACGCCTTGCCGGAAGGCCTCT
CCTGCCCAGGGTCCCTGCACTTCATACGCATCCTCGCCGACCAGTCAGGC
CTACCCGACACCCGCACCGACCAGGAGCTCGAGGACTTTTTCGACCAGAC
CGACAAGCGCGTTCGTACCGCGGTCTTGAACGGCTTGCTCCGCACGCTTT
CGCCGTCGGACATAGCGCGCGGCGCCTTCTT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10875:3726..4306-

>mRNA_Ecto-sp9_F_contig10875.763.1 ID=mRNA_Ecto-sp9_F_contig10875.763.1|Name=mRNA_Ecto-sp9_F_contig10875.763.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10875:3726..4306- (Ectocarpus species9 EcSCA_722f female)
GTTGAGGAAGGCCAGGCTAAGTGGGCTCTGTCGGTCATCGGGAAGATCGC
GGACGCGATCGATGCGCCGACGCACACCGTCACGCTTGCGGCCATGACCC
TCGGAGTGGCCGGCGGCGTGCCGAGATTCATGGACGGGCTGACCAATGAA
CAGATCTGCCTTCTCCCCGCGGCGTGCGTAGGGGACTCCATCTGTCGACT
GCAAGAATCTGGGACTGAAGAGAGCCCCGCCTATGACTTCCACACGGCGA
CAGACGCGATGCTGGCGATCACGAAGACCTCGTCGGAGGGCAGGGGTGAC
GGCGGTAGCGACATATTTGGCGAGACAAGCGATGAAGACGCCAAGACTCA
GTTGCTCGCTCTCGTCGTCCTCCTGAACGACGCCTTGCCGGAAGGCCTCT
CCTGCCCAGGGTCCCTGCACTTCATACGCATCCTCGCCGACCAGTCAGGC
CTACCCGACACCCGCACCGACCAGGAGCTCGAGGACTTTTTCGACCAGAC
CGACAAGCGCGTTCGTACCGCGGTCTTGAACGGCTTGCTCCGCACGCTTT
CGCCGTCGGACATAGCGCGCGGCGCCTTCGTTGAGGAAGGCCAGGCTAAG
TGGGCTCTGTCGGTCATCGGGAAGATCGCGGACGCGATCGATGCGCCGAC
GCACACCGTCACGCTTGCGGCCATGACCCTCGGAGTGGCCGGCGGCGTGC
CGAGATTCATGGACGGGCTGACCAATGAACAGATCTGCCTTCTCCCCGCG
GCGTGCGTAGGGGACTCCATCTGTCGACTGCAAGAATCTGGGACTGAAGA
GAGCCCCGCCTATGACTTCCACACGGCGACAGACGCGATGCTGGCGATCA
CGAAGACCTCGTCGGAGGGCAGGGGTGACGGCGGTAGCGACATATTTGGC
GAGACAAGCGATGAAGACGCCAAGACTCAGTTGCTCGCTCTCGTCGTCCT
CCTGAACGACGCCTTGCCGGAAGGCCTCTCCTGCCCAGGGTCCCTGCACT
TCATACGCATCCTCGCCGACCAGTCAGGCCTACCCGACACCCGCACCGAC
CAGGAGCTCGAGGACTTTTTCGACCAGACCGACAAGCGCGTTCGTACCGC
GGTCTTGAACGGCTTGCTCCGCACGCTTTCGCCGTCGGACATAGCGCGCG
GCGCCTTC
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