mRNA_Ecto-sp9_F_contig1087.757.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1087.757.1
Unique NamemRNA_Ecto-sp9_F_contig1087.757.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ0_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 8.090e-101
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 1
Query:    1 MTRQTASEDLSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINMV 459
            MTRQTASEDLSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINM+
Sbjct:    1 MTRQTASEDLSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINMM 153          
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC57_AURAN)

HSP 1 Score: 228 bits (581), Expect = 1.600e-74
Identity = 112/144 (77.78%), Postives = 135/144 (93.75%), Query Frame = 1
Query:   28 LSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINMV 459
            LS  ELAEFREIF+LVDRDGGGT+TKEELGELMDTLGI+ATPEE+DLMI EIDQDNNGEIDFEEFVAVMSRKV+A+YTADQVK+AFKVFEG++P GHIK++ +++ALT  G+++LT+EQAHDLVSQLEPD +G++NY EY+NM+
Sbjct:    5 LSNEELAEFREIFNLVDRDGGGTITKEELGELMDTLGIDATPEEIDLMIHEIDQDNNGEIDFEEFVAVMSRKVSATYTADQVKNAFKVFEGDAPSGHIKVDVLIRALTNDGTDKLTDEQAHDLVSQLEPDRSGLINYSEYVNMM 148          
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG4_9STRA)

HSP 1 Score: 228 bits (581), Expect = 2.160e-74
Identity = 115/156 (73.72%), Postives = 141/156 (90.38%), Query Frame = 1
Query:    1 MTRQTASED---LSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINMV 459
            M+ + +SED   L+  E+AEFREIF LVDRDGGGT+TK ELG+LMDTLGIEAT EE++LM+ EIDQDNNGEIDF+EFVAVMSRKVNASYT +QVK AFKVFEG++P G+IK+ES+++ALTTYG+E+LTEEQA +LVSQLEPDHNG+VNYVEY+N++
Sbjct:    1 MSTRASSEDAYQLTAEEVAEFREIFSLVDRDGGGTITKVELGDLMDTLGIEATAEEIELMVAEIDQDNNGEIDFQEFVAVMSRKVNASYTPEQVKGAFKVFEGSAPSGYIKMESLVRALTTYGTEKLTEEQARELVSQLEPDHNGMVNYVEYVNIM 156          
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LFC1_HETAK)

HSP 1 Score: 223 bits (569), Expect = 1.710e-72
Identity = 109/149 (73.15%), Postives = 138/149 (92.62%), Query Frame = 1
Query:   13 TASEDLSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINMV 459
            T + +LS  EL EFREIF+LVDRDGGG++TKEELG+LMDTLGI+A+PEE+DLMI+EIDQDNNGEIDF EFVAVMSRKVNA+YT++QVK+AF+VFEG SPPG+IK++++ KAL TYG+E+LT+EQA +LVSQLEPD +G++NYVEY+NM+
Sbjct:   14 TRTLNLSEEELQEFREIFNLVDRDGGGSITKEELGDLMDTLGIDASPEEIDLMINEIDQDNNGEIDFNEFVAVMSRKVNATYTSEQVKNAFRVFEGASPPGYIKVDALAKALQTYGAEKLTDEQARELVSQLEPDAHGLINYVEYVNMM 162          
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL49_9STRA)

HSP 1 Score: 219 bits (558), Expect = 5.270e-71
Identity = 106/144 (73.61%), Postives = 134/144 (93.06%), Query Frame = 1
Query:   28 LSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINMV 459
            L+P ELAEFREIF+LVD+DGGGT++KEELGELM+TLGI+ATPEE+DLMI EID+DNNG IDF+EFVAVMSRKV+A+YTA+QV+ AF+VFE  +PPGHIK+ES+++ALTT GS++L+EEQA DLV+QLEPD +G+VNY EY+NM+
Sbjct:    5 LTPEELAEFREIFNLVDKDGGGTISKEELGELMETLGIDATPEEIDLMIAEIDEDNNGVIDFDEFVAVMSRKVSATYTAEQVRGAFRVFESGAPPGHIKVESLVRALTTDGSDKLSEEQARDLVAQLEPDRDGLVNYKEYVNMM 148          
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Match: Uncharacterized (protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BG90_SAPPC)

HSP 1 Score: 208 bits (529), Expect = 1.330e-66
Identity = 101/147 (68.71%), Postives = 131/147 (89.12%), Query Frame = 1
Query:   19 SEDLSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINMV 459
            +++LS TE+ EFREIF+LVDRD GG++TK ELGELMDTLGI  +PEE+DLMI+EIDQD+NGEIDF+EFVAVMSRKVNA+Y+ADQVK++FK+FE  S PG I++E ++ ALTTYGS++++EEQA +L+ QLEPD NG+VNY EY+NM+
Sbjct:    2 TQELSETEITEFREIFNLVDRDRGGSITKVELGELMDTLGINTSPEEIDLMINEIDQDSNGEIDFDEFVAVMSRKVNATYSADQVKASFKMFENPSTPGCIRVERLVSALTTYGSDKISEEQARELICQLEPDSNGLVNYEEYVNMM 148          
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Match: Aste57867_11938 (protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KUA7_9STRA)

HSP 1 Score: 202 bits (514), Expect = 2.560e-64
Identity = 98/145 (67.59%), Postives = 127/145 (87.59%), Query Frame = 1
Query:   25 DLSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINMV 459
            +LS  E+AEFREIF+LVDRD GG++TK ELGELMDTLGI  +PEE+DLMI+EIDQD+NGEIDF+EFVAVMSRKVNA+Y+ADQVK +F++FE  + PG IK++ + +ALT YGS++L+ EQA +L+SQLEPD NG++NY EY+NM+
Sbjct:    4 ELSENEIAEFREIFNLVDRDRGGSITKAELGELMDTLGINTSPEEIDLMINEIDQDSNGEIDFDEFVAVMSRKVNATYSADQVKMSFRMFENPNTPGFIKVDRLHRALTMYGSDKLSSEQASELISQLEPDSNGMINYEEYVNMM 148          
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Match: Uncharacterized (protein n=21 Tax=Oomycota TaxID=4762 RepID=H3H091_PHYRM)

HSP 1 Score: 201 bits (512), Expect = 5.320e-64
Identity = 100/145 (68.97%), Postives = 128/145 (88.28%), Query Frame = 1
Query:   28 LSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGN-SPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINMV 459
            LS  EL EFREIF+LVDRD GG++TK ELGELMDTLGI+ +PEE+DLMI+EIDQD+NGEIDF+EFVAVMSRKVNA+YT++QVK+AFK FEGN S PG IK + ++ ALTTYG+++++ +QA +L+SQLEPD +G +NYVEY+NM+
Sbjct:    5 LSSEELIEFREIFNLVDRDRGGSITKVELGELMDTLGIDTSPEEIDLMINEIDQDSNGEIDFDEFVAVMSRKVNATYTSEQVKTAFKAFEGNASAPGFIKADKLLIALTTYGADRISSDQAQELISQLEPDQHGNINYVEYVNMM 149          
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDX7_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.690e-63
Identity = 99/144 (68.75%), Postives = 126/144 (87.50%), Query Frame = 1
Query:   28 LSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYINMV 459
            L+  ELAEFREIF+LVD+DGGGT++K+EL ELM+TLGI A+PEEV+LMI+E+D+D +GEIDFEEFVAVMSRKVN+SYT DQVK+AFK+FEG +P G+IK+  ++ ALTTY SE +TE QA +L+SQLEPD NG+VNY EY+ M+
Sbjct:   20 LTDEELAEFREIFNLVDKDGGGTISKDELLELMETLGINASPEEVELMINEVDEDQSGEIDFEEFVAVMSRKVNSSYTPDQVKAAFKIFEGTAPSGYIKVGDLLTALTTYCSETVTEAQAAELISQLEPDTNGLVNYAEYVTMM 163          
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4J2_9STRA)

HSP 1 Score: 196 bits (498), Expect = 4.870e-62
Identity = 97/140 (69.29%), Postives = 120/140 (85.71%), Query Frame = 1
Query:   28 LSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEGNSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEY 447
            LS  E++EFREIF+LVD+DGGG++TK EL +LMDTLGI+A+PEE+D MI EIDQD NG+IDFEEFV VMSRKVNA+YT+DQVK AFKVFE  + PGHIK E+++KAL TYG+E+LTE+QAH+LV QLE D  G +NY +Y
Sbjct:    1 LSAEEISEFREIFNLVDKDGGGSITKVELADLMDTLGIDASPEEIDAMIFEIDQDGNGDIDFEEFVTVMSRKVNATYTSDQVKGAFKVFEAQANPGHIKAEALIKALCTYGTEKLTEDQAHELVGQLEVDAAGYINYSDY 140          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1087.757.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized8.090e-10199.35protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.600e-7477.78protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Uncharacterized2.160e-7473.72protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical1.710e-7273.15protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical5.270e-7173.61protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Uncharacterized1.330e-6668.71protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A... [more]
Aste57867_119382.560e-6467.59protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A... [more]
Uncharacterized5.320e-6468.97protein n=21 Tax=Oomycota TaxID=4762 RepID=H3H091_... [more]
Hypothetical1.690e-6368.75protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486... [more]
Hypothetical4.870e-6269.29protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1087contigEcto-sp9_F_contig1087:10452..13219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.7
Seed ortholog evalue2.6e-77
Seed eggNOG ortholog2880.D8LKJ0
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-16_003140.1
Exons5
Model size459
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1087.757.1prot_Ecto-sp9_F_contig1087.757.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1087 10452..13219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928308.8030508-CDS-Ecto-sp9_F_contig1087:10451..106221622928308.8030508-CDS-Ecto-sp9_F_contig1087:10451..10622Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 10452..10622 -
1692277829.8840342-CDS-Ecto-sp9_F_contig1087:10451..106221692277829.8840342-CDS-Ecto-sp9_F_contig1087:10451..10622Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 10452..10622 -
1622928308.8158054-CDS-Ecto-sp9_F_contig1087:11237..113081622928308.8158054-CDS-Ecto-sp9_F_contig1087:11237..11308Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 11238..11308 -
1692277829.8941114-CDS-Ecto-sp9_F_contig1087:11237..113081692277829.8941114-CDS-Ecto-sp9_F_contig1087:11237..11308Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 11238..11308 -
1622928308.8281786-CDS-Ecto-sp9_F_contig1087:11845..119391622928308.8281786-CDS-Ecto-sp9_F_contig1087:11845..11939Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 11846..11939 -
1692277829.9039154-CDS-Ecto-sp9_F_contig1087:11845..119391692277829.9039154-CDS-Ecto-sp9_F_contig1087:11845..11939Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 11846..11939 -
1622928308.8415542-CDS-Ecto-sp9_F_contig1087:12868..129301622928308.8415542-CDS-Ecto-sp9_F_contig1087:12868..12930Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 12869..12930 -
1692277829.917258-CDS-Ecto-sp9_F_contig1087:12868..129301692277829.917258-CDS-Ecto-sp9_F_contig1087:12868..12930Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 12869..12930 -
1622928308.8545992-CDS-Ecto-sp9_F_contig1087:13158..132191622928308.8545992-CDS-Ecto-sp9_F_contig1087:13158..13219Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 13159..13219 -
1692277829.933404-CDS-Ecto-sp9_F_contig1087:13158..132191692277829.933404-CDS-Ecto-sp9_F_contig1087:13158..13219Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 13159..13219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1087.757.1

>prot_Ecto-sp9_F_contig1087.757.1 ID=prot_Ecto-sp9_F_contig1087.757.1|Name=mRNA_Ecto-sp9_F_contig1087.757.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp
MTRQTASEDLSPTELAEFREIFDLVDRDGGGTVTKEELGELMDTLGIEAT
PEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKVFEG
NSPPGHIKIESVMKALTTYGSEQLTEEQAHDLVSQLEPDHNGVVNYVEYI
NMV
back to top

mRNA from alignment at Ecto-sp9_F_contig1087:10452..13219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1087.757.1 ID=mRNA_Ecto-sp9_F_contig1087.757.1|Name=mRNA_Ecto-sp9_F_contig1087.757.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2768bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1087:10452..13219- (Ectocarpus species9 EcSCA_722f female)
ATGACGCGTCAGACTGCTTCAGAAGACCTTTCTCCTACAGAGCTGGCAGA GTTCAGAGAAAGTAAATCCTCTGACTTCAAGGACGTGGTTGGCTCTGTAG TCTATAGCCTTTGTTTGTGTGGTCTAATTCAGGAGGGTGTGGTGCCAAGA TTGATGACGGAATTTTGCGTGTGTTACATTTGAACATGCCATCTATACCT GCGGGTAGCGAACAACCTTCTCAACGCTAACTCTCGTCACCAGCTGCCTC ACTGCGACCCACGATCGTCGCCATCGTTGGTCGTTACAGTATTCGACCTT GTGGACCGAGACGGCGGCGGCACGGTGACAAAAGAGGAGCTAGGAGAACT GGTGCGTTAGAGCCACAAATGTCGTAGAATAGTGGGTGTGCGTATGTTAT AACACCCGCGTGGGTTTTAACAAAGAAAACTCTTTTGTCCTGTCGTCCGA CCACAGAGATATGTAGTCCAGGCCGTAGAAATGATGTGACGTGTATCCTA CATACATAGACCAGACAAATCTTTCGGCCTAAAAATCCTGGACGCTCGAT ACGAGACTCCACAGAAGTGTAGTCGGCGGTGAACATGCGTCTTCTCTTCT GGGTATTGTAATCAAGCCCATCTTCTGAACCAGAGGGAAGAGATTCAGTA CCGATTCGTTTCGAGAGCTTTCCGACGATATCAGTTCGGCCGTGGCACTC TCTCAGCAAAACAGTATGACGGGCCATCCGTGGCACTCTCTCAGCAAAAC AATATGACGGGCAATCGAAAATTGGAAAATTGGTCCCAACGGAGGTGGTA TCCAACGCCATACCTGTACACGAAGTCTCTATCGATTACATGACTTCATT CCGCATGAACAAGAGCTTTCTGCTGTATTCGAAAGTAGTAGTAAGTCTCT GAGAGAGACTACCCGTTCGGGAAAAATATCAGAGAGGATGTGTTGAAGTA TATTATAGGTCATCTCCTGAAACTTCAATCGCTTCGGATCGACCCAAATG ATTGTGGCCTGATCCTGCACATGTTTCGGGCTCTCTGTGATCTGCAGGAG ATATCATAGGGAGGAGCTTCGACTGATGCCCTGACCCTTCTACAACAACA GTTTTGTATAATTTCTCCACAAATCAATGTCGTTCAGAGAACACCGTTGT CAAAAGGACAAATATTTACTTGGTACATGTAGGGACACCCTGTGTGCATC GCTTGAGGGCGAAGGATCTTCCTTTACCACCCTCAACTACCGACCAATGT TTCATGACTGCAAAAACAATTGCTGCGAAGATGGACACACTCGGGATTGA AGCTACCCCCGAGGAGGTTGATCTAATGATCGATGAGATCGACCAGGACA ACAACGGAGAAATCGACTTTGAAGGTACGGCGGGTGTGTGGGATATCTTG ATATTATTAGCGTGTCGGCAACCGGGTTTCTCACATTGATTACTAATCGT GGTCGGCAAACCATGCATCACTTTGCCGATACCAACTGGATTTGCAGCCA GCCTTCTTTAGTCATTCGTATTAGGCAGTGAGCACATATACCACATCGTT GCTATAGAAGATGGCGTGCCACGATCGCCAATTCAATCGTTTCCCCGACA TGTTATTCGAAATACACATTTTCTCTCCCGCATATGGTTGCGCTTCCAGC CTTGTGCCGCGGATTGCTTTGGGTTCAGCGTTGCAAATCTATGTTGGAAC CAGTTGACGGCTGGCCTTGCCGAACGTTGCACCAATGAAGCACCTCGGGC TCAAACCCTGTTGCACGCAAAACAGCGCTATCGCTACTTCGTTCCAGTAG CCGAAAGTTTCAACGCCCTATTGACGATCCGCAGGTAACGATGTACCAGT TGGGCTGTAATTGCCTGAACTACACCACATCATCATTTTTACGCGATGTT TCTCTTGACAGAGTTTGTGGCCGTGATGTCGCGAAAAGTTAACGCATCGT ACACTGCTGACCAGGTCAAGAGCGCTTTCAAGGTGGGAGTGACGTATTGC GAGTTGGGGGACGCGTCGAGTGAGATTTGCCCGGGTGCGCTTGTCCATTT TTTTGTGACCCTGATCCAGCAAACAGCGTGAAGGAGAAGTCCTTGGCTCC GCGACCCCTTCTGGGTGCTAATGTGTGTGAATACTGCTCTACAGGCGTTC AGAGAGCACTCCTCTCTCGCCAGTGCCACAAGGCTCGTCACTTGTGCCCC TAGAACCACGCCATTGTCTACTCCACAACAGGACATACCATGTTGCCGTA TCAATCTCTTGGGGATATTCCCTGATCACGACGACCACTTAAGAACGGCA CTAGCATCTCTAGGCTATTGAAGACAACGGTGCCCCCCCCCCCAAAGGAG ACGCTGAGTGGGATCATAAGGACACGGGCCTCTCTTAGGCGGAGTGTATC GTAGACGGACTATCGATGTCAACGCCACTCTTATCAAGAACTGGTGACGA TAGTTTTGGTTTCCGGTGGGTGCGGAGAATCAAGAAATCTTAAAGGGGTA CATAGCGCATGTTGAGCGGGACCTGACTGGAGGCGGAAGGTCCCAGCCCA GCGCATTCACCGGCCGTTGTGTGTTGTGCCACGTGACCTGAACCCAGGTT TTCGAAGGAAACTCCCCTCCGGGACACATCAAGATAGAATCCGTCATGAA GGCGTTGACCACCTACGGGAGCGAGCAACTCACCGAAGAGCAAGCGCATG ATCTAGTCAGCCAGCTCGAGCCGGACCACAATGGCGTGGTGAACTACGTC GAGTACATCAACATGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1087:10452..13219-

>mRNA_Ecto-sp9_F_contig1087.757.1 ID=mRNA_Ecto-sp9_F_contig1087.757.1|Name=mRNA_Ecto-sp9_F_contig1087.757.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1087:10452..13219- (Ectocarpus species9 EcSCA_722f female)
ATGACGCGTCAGACTGCTTCAGAAGACCTTTCTCCTACAGAGCTGGCAGA
GTTCAGAGAAAATGACGCGTCAGACTGCTTCAGAAGACCTTTCTCCTACA
GAGCTGGCAGAGTTCAGAGAAATATTCGACCTTGTGGACCGAGACGGCGG
CGGCACGGTGACAAAAGAGGAGCTAGGAGAACTGTATTCGACCTTGTGGA
CCGAGACGGCGGCGGCACGGTGACAAAAGAGGAGCTAGGAGAACTGATGG
ACACACTCGGGATTGAAGCTACCCCCGAGGAGGTTGATCTAATGATCGAT
GAGATCGACCAGGACAACAACGGAGAAATCGACTTTGAAGATGGACACAC
TCGGGATTGAAGCTACCCCCGAGGAGGTTGATCTAATGATCGATGAGATC
GACCAGGACAACAACGGAGAAATCGACTTTGAAGAGTTTGTGGCCGTGAT
GTCGCGAAAAGTTAACGCATCGTACACTGCTGACCAGGTCAAGAGCGCTT
TCAAGAGTTTGTGGCCGTGATGTCGCGAAAAGTTAACGCATCGTACACTG
CTGACCAGGTCAAGAGCGCTTTCAAGGTTTTCGAAGGAAACTCCCCTCCG
GGACACATCAAGATAGAATCCGTCATGAAGGCGTTGACCACCTACGGGAG
CGAGCAACTCACCGAAGAGCAAGCGCATGATCTAGTCAGCCAGCTCGAGC
CGGACCACAATGGCGTGGTGAACTACGTCGAGTACATCAACATGGTGGTT
TTCGAAGGAAACTCCCCTCCGGGACACATCAAGATAGAATCCGTCATGAA
GGCGTTGACCACCTACGGGAGCGAGCAACTCACCGAAGAGCAAGCGCATG
ATCTAGTCAGCCAGCTCGAGCCGGACCACAATGGCGTGGTGAACTACGTC
GAGTACATCAACATGGTG
back to top