mRNA_Ecto-sp9_F_contig1087.756.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1087.756.1
Unique NamemRNA_Ecto-sp9_F_contig1087.756.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Match: Arf2A, (ARF family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ1_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 4.490e-126
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 3 
Query:  144 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK 701
            MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQD NMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK
Sbjct:    1 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK 186
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Match: Arf2B, (ARF family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ9_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 2.750e-88
Identity = 129/186 (69.35%), Postives = 158/186 (84.95%), Query Frame = 3 
Query:  144 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK 701
            MG +++RL +IL  L+EKRLLLLGLD AGKTSLLY LHLNE V T+PT+GFN+E+VEYN M+MTIWD+GGQ KLR LW +YF++TDALIF+VDS+D  RIEEARDE+FH+L+D NMDGCQTVLI+LNKQD+PGA+ P  +  ++GL+ AG NPL +RNWYMQ CCA+TGEGV+ GLDWL  AL KK
Sbjct:    1 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDENRIEEARDEMFHVLRDPNMDGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKK 186
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Match: ADP-ribosylation (factor 1-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E330)

HSP 1 Score: 215 bits (547), Expect = 5.540e-63
Identity = 104/185 (56.22%), Postives = 134/185 (72.43%), Query Frame = 3 
Query:  144 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNK 698
            MG  I+ L  +L   +E R+L++GLDAAGKT++LY+L L EV+TTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HYF NT  LIFV+DSND ERI EAR+EL  IL +  + G  T+L+  NKQDLP A+  S +  KLGL     + L +RNWY+Q CCA +GEG+Y+GLDWL   ++K
Sbjct:    1 MGMTISTLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEVITTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDRERIAEARNELHRILSEDELRGA-TLLVFANKQDLPNAMRVSEITDKLGL-----HSLRQRNWYIQSCCAASGEGLYEGLDWLSSNISK 179
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BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Match: ADP-ribosylation (factor n=3 Tax=Orchidaceae TaxID=4747 RepID=A0A2H9ZX41_9ASPA)

HSP 1 Score: 213 bits (542), Expect = 3.100e-62
Identity = 105/188 (55.85%), Postives = 134/188 (71.28%), Query Frame = 3 
Query:  144 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK*K 707
            MG  ++RL  +L   +E R+L++GLDAAGKT++LY+L L EV+TTIPTIGFNVE V+Y  +  T+WD+GGQ K+RPLW HYF NT  LIFV+DSND ERI EARDEL  +L +  + G  T+LI  NKQDLP A+S S +  KLGL     + L +R WY+Q  CA TGEG+Y+GLDWL   +  K K
Sbjct:    1 MGLALSRLVKMLFARREMRILMVGLDAAGKTTILYKLKLGEVITTIPTIGFNVETVDYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDRERISEARDELHRMLSEDELQGA-TLLIFANKQDLPNAMSISEITDKLGL-----HALRQRRWYIQSACATTGEGLYEGLDWLSNNIFSKAK 182
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Match: ADP-ribosylation (factor 1-like n=2 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7CCW4_PHODC)

HSP 1 Score: 215 bits (547), Expect = 1.540e-61
Identity = 106/188 (56.38%), Postives = 136/188 (72.34%), Query Frame = 3 
Query:  138 ASMGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK 701
            A+MG  I+R+  +L   +E R+L++GLDAAGKT++LY+L L EV+TTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HYF NT  LIFVVDSND ERI EARDEL  +L +  + G  T+L+  NKQDLP A+S S +  KLGL     + L +R WY+Q  CA TGEG+Y+GLDWL   ++ K
Sbjct:  103 AAMGLAISRMVRMLFAKREMRILMVGLDAAGKTTILYKLKLGEVITTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERILEARDELHRMLGEDELQGA-TLLVFANKQDLPNAMSVSEITDKLGL-----HALRQRRWYIQSACATTGEGLYEGLDWLSSNISDK 284
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Match: ADP-ribosylation (factor n=1 Tax=Suberites domuncula TaxID=55567 RepID=A1XKU1_SUBDO)

HSP 1 Score: 211 bits (537), Expect = 1.570e-61
Identity = 105/185 (56.76%), Postives = 131/185 (70.81%), Query Frame = 3 
Query:  144 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNK 698
            MG  I+ L N L G +  R+L++GLDAAGKT++LY+L L E+VTTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HYF+NT  LIFVVDSND ERI EA+DEL  +LQ+  +     VL+  NKQDLP A+S S ++ KLGL       L  RNWY+Q  CA  G G+Y+GLDWL   L+K
Sbjct:    1 MGLTISNLFNSLFGNKNMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFVNTQGLIFVVDSNDRERINEAKDELARMLQEDELRDA-VVLVFANKQDLPNAMSVSEIKDKLGLHN-----LTSRNWYIQTACATQGTGLYEGLDWLSQQLSK 179
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Match: ADP-ribosylation (factor n=8 Tax=Oomycota TaxID=4762 RepID=M4BN95_HYAAE)

HSP 1 Score: 211 bits (537), Expect = 1.620e-61
Identity = 102/186 (54.84%), Postives = 131/186 (70.43%), Query Frame = 3 
Query:  144 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK 701
            MG   +R+   L G +E R+L++GLDAAGKT++LY+L L EVVTTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HY+ NT  LIFVVDSND +R++ ARDEL  +L +  +     +L+  NKQDLP A+S + M  KLGL G     L  R W++Q CCA TG+G+Y+GLDWL   L KK
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRD-SVLLVFANKQDLPNAMSAAEMTDKLGLHG-----LRHRQWFIQACCATTGDGLYEGLDWLSATLQKK 180
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Match: ADP-ribosylation (factor n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3GES4_COCAP)

HSP 1 Score: 211 bits (538), Expect = 2.010e-61
Identity = 103/186 (55.38%), Postives = 133/186 (71.51%), Query Frame = 3 
Query:  144 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK 701
            MG  I+RL  +L   +E R+L++GLDAAGKT++LY+L L E+VTTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HYF NT  LIFVVDSND ERI EARDEL  +L +  +    T+L+  NKQDLP A++ S +  KLGL     N L +R WY+Q  CA +G+G+Y+GLDWL   ++ K
Sbjct:    1 MGMTISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERISEARDELHRMLSEDELRDA-TLLVFANKQDLPNALTVSEITDKLGL-----NSLRQRRWYIQATCATSGQGLYEGLDWLSSNISTK 180
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Match: ADP-ribosylation (factor n=30 Tax=Stramenopiles TaxID=33634 RepID=K3WYT4_GLOUD)

HSP 1 Score: 211 bits (536), Expect = 2.270e-61
Identity = 102/186 (54.84%), Postives = 131/186 (70.43%), Query Frame = 3 
Query:  144 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK 701
            MG   +R+   L G +E R+L++GLDAAGKT++LY+L L EVVTTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HY+ NT  LIFVVDSND +R++ ARDEL  +L +  +     +L+  NKQDLP A+S + M  KLGL G     L  R W++Q CCA TG+G+Y+GLDWL   L KK
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRD-SILLVFANKQDLPNAMSAAEMTDKLGLHG-----LRHRQWFIQACCATTGDGLYEGLDWLSATLQKK 180
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Match: ADP-ribosylation (factor n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3Q2S8_9MAGN)

HSP 1 Score: 210 bits (534), Expect = 4.610e-61
Identity = 103/186 (55.38%), Postives = 132/186 (70.97%), Query Frame = 3 
Query:  144 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK 701
            MG  I+RL   L   +E R+L++GLDAAGKT++LY+L L E+VTTIPTIGFNVE V+Y  +  T+WD+GGQ K+RPLW HYF NT  LIFV+DSND ERI EARDEL  +L +  +    T+L+  NKQDLP A+S S +  KLGL     + L +R WY+Q  CA TGEG+Y+GLDWL   ++ K
Sbjct:    1 MGMTISRLIRQLFSRKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVDYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDKERISEARDELHRMLSEEELRDA-TLLVFANKQDLPNAMSVSEITDKLGL-----HSLRQRRWYIQSACATTGEGLYEGLDWLSNNISTK 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1087.756.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Arf2A,4.490e-12699.46ARF family GTPase n=1 Tax=Ectocarpus siliculosus T... [more]
Arf2B,2.750e-8869.35ARF family GTPase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
ADP-ribosylation5.540e-6356.22factor 1-like n=1 Tax=Dioscorea cayennensis subsp.... [more]
ADP-ribosylation3.100e-6255.85factor n=3 Tax=Orchidaceae TaxID=4747 RepID=A0A2H9... [more]
ADP-ribosylation1.540e-6156.38factor 1-like n=2 Tax=Phoenix dactylifera TaxID=42... [more]
ADP-ribosylation1.570e-6156.76factor n=1 Tax=Suberites domuncula TaxID=55567 Rep... [more]
ADP-ribosylation1.620e-6154.84factor n=8 Tax=Oomycota TaxID=4762 RepID=M4BN95_HY... [more]
ADP-ribosylation2.010e-6155.38factor n=1 Tax=Corchorus capsularis TaxID=210143 R... [more]
ADP-ribosylation2.270e-6154.84factor n=30 Tax=Stramenopiles TaxID=33634 RepID=K3... [more]
ADP-ribosylation4.610e-6155.38factor n=1 Tax=Cinnamomum micranthum f. kanehirae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1087contigEcto-sp9_F_contig1087:5972..9775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.9
Seed ortholog evalue8.7e-104
Seed eggNOG ortholog2880.D8LKJ1
KEGG koko:K07937,ko:K07977
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0070@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArf2A, ARF family GTPase
Ec32 orthologEc-16_003150.1
Exons6
Model size1845
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1087.756.1prot_Ecto-sp9_F_contig1087.756.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1087 6115..8634 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928308.660063-UTR-Ecto-sp9_F_contig1087:5971..61141622928308.660063-UTR-Ecto-sp9_F_contig1087:5971..6114Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1087 5972..6114 +
1692277829.7974255-UTR-Ecto-sp9_F_contig1087:5971..61141692277829.7974255-UTR-Ecto-sp9_F_contig1087:5971..6114Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1087 5972..6114 +
1622928308.75799-UTR-Ecto-sp9_F_contig1087:8634..97751622928308.75799-UTR-Ecto-sp9_F_contig1087:8634..9775Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1087 8635..9775 +
1692277829.8758337-UTR-Ecto-sp9_F_contig1087:8634..97751692277829.8758337-UTR-Ecto-sp9_F_contig1087:8634..9775Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1087 8635..9775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928308.674939-CDS-Ecto-sp9_F_contig1087:6114..61621622928308.674939-CDS-Ecto-sp9_F_contig1087:6114..6162Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 6115..6162 +
1692277829.8090482-CDS-Ecto-sp9_F_contig1087:6114..61621692277829.8090482-CDS-Ecto-sp9_F_contig1087:6114..6162Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 6115..6162 +
1622928308.6887295-CDS-Ecto-sp9_F_contig1087:6526..65801622928308.6887295-CDS-Ecto-sp9_F_contig1087:6526..6580Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 6527..6580 +
1692277829.8169394-CDS-Ecto-sp9_F_contig1087:6526..65801692277829.8169394-CDS-Ecto-sp9_F_contig1087:6526..6580Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 6527..6580 +
1622928308.7024434-CDS-Ecto-sp9_F_contig1087:7001..70961622928308.7024434-CDS-Ecto-sp9_F_contig1087:7001..7096Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 7002..7096 +
1692277829.8249657-CDS-Ecto-sp9_F_contig1087:7001..70961692277829.8249657-CDS-Ecto-sp9_F_contig1087:7001..7096Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 7002..7096 +
1622928308.7152493-CDS-Ecto-sp9_F_contig1087:7456..76461622928308.7152493-CDS-Ecto-sp9_F_contig1087:7456..7646Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 7457..7646 +
1692277829.8344917-CDS-Ecto-sp9_F_contig1087:7456..76461692277829.8344917-CDS-Ecto-sp9_F_contig1087:7456..7646Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 7457..7646 +
1622928308.726946-CDS-Ecto-sp9_F_contig1087:7955..80541622928308.726946-CDS-Ecto-sp9_F_contig1087:7955..8054Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 7956..8054 +
1692277829.8470557-CDS-Ecto-sp9_F_contig1087:7955..80541692277829.8470557-CDS-Ecto-sp9_F_contig1087:7955..8054Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 7956..8054 +
1622928308.742646-CDS-Ecto-sp9_F_contig1087:8559..86341622928308.742646-CDS-Ecto-sp9_F_contig1087:8559..8634Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 8560..8634 +
1692277829.8643725-CDS-Ecto-sp9_F_contig1087:8559..86341692277829.8643725-CDS-Ecto-sp9_F_contig1087:8559..8634Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 8560..8634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1087.756.1

>prot_Ecto-sp9_F_contig1087.756.1 ID=prot_Ecto-sp9_F_contig1087.756.1|Name=mRNA_Ecto-sp9_F_contig1087.756.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=187bp
MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIG
FNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERI
EEARDELFHILQDYNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAG
RNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK*
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mRNA from alignment at Ecto-sp9_F_contig1087:5972..9775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1087.756.1 ID=mRNA_Ecto-sp9_F_contig1087.756.1|Name=mRNA_Ecto-sp9_F_contig1087.756.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3804bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1087:5972..9775+ (Ectocarpus species9 EcSCA_722f female)
GCAACATCCCCAGCACATCCACAAGCTACACACCAGCACAGTACACTTCA
ACAGCTGCCGTGGTCTGCCGCGCACGATCGCCACACTACACAGCAGTAGC
GAATCCATCCCCTTCTTGACATTCGTCTTCGCCAACAGCAAGCATGGGGC
AGATCATCGCTCGTCTCGCCAACATCCTCAACGGCCTCCAGGTGTGTACA
GATAGAATAAACAGAGAGTGAGTGGTTCACCCTCCTGATGATAGATAAAG
CCGACATAGTTAGTGCTCGAATGGCGGTTCAATTATCCTCGAGCAATGTC
TTTGTCCCCTCGAGCTGCCGGTCCATGCCTTGTGCGCCTGTGCTCTGTCG
TCAACAAACAACAGATTGCATGAACTTGTAGATACTCTGAAGGCGAGAAT
CGAAAAAACGGGGCGTTCAGCAGCTTGGGGATGCATGTACAACACATGAT
AAGTAGGATAATGTTCAAGAGTCCGACCGACTTTCTAATCTGTTTTGAGG
TGATACATCGTCACGCACATCTGTTTTTGTCTTGTTTGTCATGATTTTTC
TCCAGGAGAAGCGCCTTCTGCTGCTGGGCTTGGACGCTGCCGGCAAGACT
TCTCTTTTGGTGAGATTTTACTAGAGGGGAAACGAGGGGCGTTATTGCTG
TAGTGAAGAAATACGGGGAATGGCTGGATGGTATTTTTGGGCATGAAATT
AAATCGTCGATTGAATACTCACACAACAGCATCGAGCCAAAATAGATTGG
CTGTGGTTTGGGTCCGCATAGTTCTTGTTGTCTCGCACTACGGTGATACC
GCGTGATAGTCTGCCCCCTTGGTCTCCCAGAACTCATCAGCTGCCAGGGC
TCACCCCCAAGGCGCATGGTTTGGTGTTTTTCCTCTTGAAAAACGTGCTC
TACACAATTAACAGAACTAGACACCGTGTATGTGCTCATTTTCTGACCTT
GTTTTGTGGAGGCGTGCCACGACCATCTGGAAAAATAACAATCGATATCA
TTCTGCTATGATTTTACTCGATGTCAACAGTACAGGCTTCACTTGAATGA
GGTGGTGACCACCATCCCCACCATCGGCTTCAACGTCGAACGAGTCGAGT
ACAACAGGATGATGATGACTATCTGGTGAGGGGCGATGTAGCGGCAAAAC
ACTCAGCACTGTGTGTTCCTGCGGTCCGTACCGACATTGCAGTAGTAGGA
GTGCGACACAGTATGGTCTTTCCTTTACCCTTCCCCCCTCCCCCCATCCA
TTTTTCAGCCTAAAATAGGTCGTAGAAATGGCGGAGTGGAGCAAAGTTGG
TGCTAGGAAATTGTCTGAACGTTTTCGCAAAGCAGTTCGGGCCGTTATAA
ACTTATCGCTTCCAAATTCGGCGTGCTTTTTTTCGATACTCTTGTTCTTG
CAATAAGCCCAACAACAAATGTCCATGTGTCACCCCTGACCCTCCCAAAT
TCTCTTTCCCTCCTTTCTGTTGAATATTCTGCCAGGGATATCGGGGGCCA
AACCAAGCTACGGCCGCTCTGGCACCACTATTTCATCAACACCGACGCCT
TGATCTTCGTCGTGGATTCTAACGACCATGAACGCATCGAGGAAGCGAGG
GACGAGTTGTTCCACATACTGCAGGACTATAACATGGATGGCTGCCAAAC
TGTCCTCATTCTCCTTAACAAGCAGGTAATTGCTATTGCGGTGAAAACGT
TGGTTGTGGGTTATATTCTCGCTTGGGCTACACTGGGGGAGGAGGAGATC
CTAGCTTTGGGCTGTATATTTCCTCGTGCACATCGGATCGGTTCTCTCAC
AAGTTGATGGCAAACAAACGCCAGATGCTCGTACTCCTTAGTAAGCGCTC
ATTTGCACAAAATTGAAGGAAGTTGATTTTTCTGACACCGAAAAGCAGCA
ATCCCGTTCTTTTCCTTGCTACAAGACCAATCGATCAACCTGCCCTCACT
CTCCTCGCCCGTGCCTCTCCCCCCCTCCTCTCAGGACCTTCCCGGTGCGA
TCAGCCCTAGCGCCATGCGCAGCAAGCTCGGCTTGGACGGCGCGGGACGC
AATCCGCTCATGAAGCGCAATTGGTATATGCAGGTAATATTCCTACCCGG
AGCACACTAAAACTTAGATGCGTGTCAAGCAATAGATGAACTTTTGAAGT
ATCGTGTATTCTGTAACCTTCTCGAACCCCCTGTAAAGACATTGTGTTTT
GTACTCCTGTTCGATTCAACTCTGGGAGATGATGTAGAGCTCGGTATGCA
CCTGTAGAACGGCCACTGTCCTCATTTCTTGACAAGACAGCAAGTGCTAC
TGAAAGTGGCCTGGAAACACCTTTTCCTTTTATGTACAGCCTAGTCATAC
CCGTGGCCCCATTAATCCCTCCTGTTTGGACACGCAGTTGAACGAGACAC
ATCCCAAAGATGTTATTTCTGCGGTAGAGAAACATGCGGATGAGTGCGCT
CAGCGGTTGATCATATCGTTCTAGGAAATGGCTGCCCCCAGACGAGAGGT
ACCGCCATATGGGTGCAGCGTATCACTATGCTGAGCAATACTCCCCGCGT
CTCGGCCGCTTCCTTTCTGTGCGTGCCGGCAAATTCAGGGCTGCTGTGCG
GTCACGGGCGAGGGAGTATACGATGGTCTCGACTGGCTGAGGGGAGCGTT
GAACAAGAAGTGAAAGTCGACTCACGCGGACGGCCTTTACAGCATGTGAT
CAGAGTAGTTTTTTTGACTCTCGAAAGCGTATGCGGTAGGCCATGGAACG
ATAGCTATTCTCGGCCTGTCAATGTTGGTATCATGTTTCTATTTTTCGGG
TAAGTACGAAATTGCAGGTAGCGACCCAGGGAAAACTATTCTCGGCCTAT
CAGTACCTGTTCTGTGTCATGTTTCTGTTTTTCGGGAAAGTTCGAAATTG
CAGTTACGTACATAGCGGCTCAAGTGCTTCGTCCCTCTGCCATTACAATT
CATTGTGTTTGGGACCAGGGATGATTATGTGCAGTACCTGTTTGACGCAA
CGGTGTTGTAACTGAAGCGTTTCAGGGGGGGGGTCAATCAGGAAGTCCCT
CGCGGGTACAAGCCGGTAGGGCATCAATGTGTGGTTGTTAGTGGTGAAGG
GGTCGACAATATCAGTGGTTAGCATATGGCTTATTTGTGGGATACTATCA
CGGTATGTGCAGTAGTGTGAGTAAGATCGTGCGTGTGCCCGTTTTGCCCC
TAGTGTTGTTGTTTGCACGCACGCCTACAGTCGATTGGCAAAGAAACGCA
GCTTGCCTCAGGCCATCGCGTGCTGGTCCTCCAAGAGTTTCTCGTCATCT
TTTTTCATATTTGGTGTGTCATCGTCATCATGCGAGACGCTGTTTGCACG
CCCGTAGTCGAAAACTTTCATTGGCCGCGTGTGCCATGCGCGCACCGAGA
GGAGGAATTTTGTTCCCCGATAAAAATCTGTGCGGCTCCTCAAGAGCCAG
CGAGAGATATGTCGTTTCTGTGTGATAGCGGTAGCGGCGCGTTTGACCAA
TGTAGTTCGACGTTTGTTGTCGCCACGCGAGTGGGAGGTAGACGGTAGAG
AAAGGCTCCTTGACATCATGGGGCCATCGGTGTAAATGGAGTAATATATG
TAGTTTAGGACGAGCAAACGATTCGACGAAGCTGGTCGTTGGTAGCGTGC
GCAAGCTCATTCGCAACCGCCTCAGCGCAGTGTCGTGAACAGAGTAATCT
TTGAATGCATCGGAGAGCAATGCCGCACTTTACGGTATTTCTCATCGGTG
CCTAGGGCTACAGTGTGTCGTACACCGAAAAACATGCGTGATTGGTGCCC
CTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1087:5972..9775+

>mRNA_Ecto-sp9_F_contig1087.756.1 ID=mRNA_Ecto-sp9_F_contig1087.756.1|Name=mRNA_Ecto-sp9_F_contig1087.756.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1122bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1087:5972..9775+ (Ectocarpus species9 EcSCA_722f female)
ATGGGGCAGATCATCGCTCGTCTCGCCAACATCCTCAACGGCCTCCAGAT
GGGGCAGATCATCGCTCGTCTCGCCAACATCCTCAACGGCCTCCAGGAGA
AGCGCCTTCTGCTGCTGGGCTTGGACGCTGCCGGCAAGACTTCTCTTTTG
GAGAAGCGCCTTCTGCTGCTGGGCTTGGACGCTGCCGGCAAGACTTCTCT
TTTGTACAGGCTTCACTTGAATGAGGTGGTGACCACCATCCCCACCATCG
GCTTCAACGTCGAACGAGTCGAGTACAACAGGATGATGATGACTATCTGT
ACAGGCTTCACTTGAATGAGGTGGTGACCACCATCCCCACCATCGGCTTC
AACGTCGAACGAGTCGAGTACAACAGGATGATGATGACTATCTGGGATAT
CGGGGGCCAAACCAAGCTACGGCCGCTCTGGCACCACTATTTCATCAACA
CCGACGCCTTGATCTTCGTCGTGGATTCTAACGACCATGAACGCATCGAG
GAAGCGAGGGACGAGTTGTTCCACATACTGCAGGACTATAACATGGATGG
CTGCCAAACTGTCCTCATTCTCCTTAACAAGCAGGGATATCGGGGGCCAA
ACCAAGCTACGGCCGCTCTGGCACCACTATTTCATCAACACCGACGCCTT
GATCTTCGTCGTGGATTCTAACGACCATGAACGCATCGAGGAAGCGAGGG
ACGAGTTGTTCCACATACTGCAGGACTATAACATGGATGGCTGCCAAACT
GTCCTCATTCTCCTTAACAAGCAGGACCTTCCCGGTGCGATCAGCCCTAG
CGCCATGCGCAGCAAGCTCGGCTTGGACGGCGCGGGACGCAATCCGCTCA
TGAAGCGCAATTGGTATATGCAGGACCTTCCCGGTGCGATCAGCCCTAGC
GCCATGCGCAGCAAGCTCGGCTTGGACGGCGCGGGACGCAATCCGCTCAT
GAAGCGCAATTGGTATATGCAGGGCTGCTGTGCGGTCACGGGCGAGGGAG
TATACGATGGTCTCGACTGGCTGAGGGGAGCGTTGAACAAGAAGTGAGGC
TGCTGTGCGGTCACGGGCGAGGGAGTATACGATGGTCTCGACTGGCTGAG
GGGAGCGTTGAACAAGAAGTGA
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