mRNA_Ecto-sp9_F_contig1087.755.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1087.755.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI) HSP 1 Score: 960 bits (2481), Expect = 0.000e+0 Identity = 525/576 (91.15%), Postives = 537/576 (93.23%), Query Frame = 1
Query: 181 ESKYLVKQLGVLFRNIVYPASTPLLPLYSDRPVATAQPSSSPGHLFHQRXXXXXXXXXXXXALDSSMSDHPPCGSRGQPLSIATKIRDRLVSLSNIVCQKSEPLLPLHSSTPSHPCPTFSSFPAATATPIFFRSPYAHHRELVRRQQERHPLFDRPFPLDRLPEDVLPNVLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRCDFPSMASSPTAATGVRENKHAYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWANKDPQKSSRTINMTSGRDDTASVSGRIGSTSGSFPGGSNXXXXXXXSGAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSAFRQESPSVLPRPPPTGNNDTAAVATASRSGERRTDDGGGCGEEVEAGADLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALRVLPHISHWGFQQAPVRVGGXXXXXXXXHVVGSTSFGEEDVDDAVERQERIACLARSSLEALKCGRQM 1908
ES++LVKQLGVLFRNIVYPASTPLLPLYSDRPVATAQPSSSPGHLFHQRXXXXXXXXXXXXAL SSMSDHPPCGSR QPLSI TKI DRLVSLSNIVCQKSEPLLPL SSTPSHPC TFSSFPAATATP+FFRSPYAHH ELV+RQQERHPLFDRPFPLD+LPEDVLP+VLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRC+FPSMASSPTAA GVRE+KH+YLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTW NKDPQKSSRTINMTSGR XXXXXXX AVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSA RQESPSVLPRPPPT +NDTAAVATASRSG RRTD+GGGC EEVEAGA+LLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALRVLPHISHWGFQQAP RVGGXXXXXXXXHVVGSTSFGEEDVDDAVERQERIACLA SSLEALKCGRQM
Sbjct: 6 ESQHLVKQLGVLFRNIVYPASTPLLPLYSDRPVATAQPSSSPGHLFHQRXXXXXXXXXXXXALHSSMSDHPPCGSRIQPLSITTKISDRLVSLSNIVCQKSEPLLPLQSSTPSHPCSTFSSFPAATATPVFFRSPYAHHPELVQRQQERHPLFDRPFPLDQLPEDVLPSVLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRCEFPSMASSPTAAAGVREDKHSYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQKSSRTINMTSGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQESPSVLPRPPPTVSNDTAAVATASRSGGRRTDNGGGCREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALRVLPHISHWGFQQAPGRVGGXXXXXXXXHVVGSTSFGEEDVDDAVERQERIACLASSSLEALKCGRQM 581
BLAST of mRNA_Ecto-sp9_F_contig1087.755.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC80_9PHAE) HSP 1 Score: 460 bits (1184), Expect = 1.010e-155 Identity = 257/321 (80.06%), Postives = 273/321 (85.05%), Query Frame = 1
Query: 181 ESKYLVKQLGVLFRNIVYPASTPLLPLYSDRPVATAQPSSSPGHLFHQRXXXXXXXXXXXXALDSSMSDHPPCGSRGQPLSIATKIRDRLVSLSNIVCQKSEPLLPLHSSTPSHPCPTFSSFPAATATPIFFRSPYAHHRELVRRQQERHPLFDRPFPLDRLPEDVLPNVLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRCDFPSMASSPTAATGV----------RENKHAYLSHHHQQYVSNVM----HRANDQVLNLRSNRHLRKRLYNYTWANKDPQKSSRTINMTSGRDDTASVSGRIGSTSGSFPGGSN 1101
+ ++LVKQLGVLFRNIVYPAST LLP YSDRPVA AQPSSSPGHLFHQRXXXXXXXXXXX ALDSSMSDHPPCGSR QPLSI TKI +RLVSLSNIVCQKS+PLLPLHSSTPSHPCPTFS FPA TATP+FF SPYAHHRELV+RQ+ER+PLFDRPFPLDRLPEDVLP+VLAFLPA ELSGMRR SQ FLQEVDHHG+ALW SLCRCDFPSMASSPTAA GV N A L + ++ + HRANDQVLNLRSNRHLRKRLYNYTW NKDPQ+SSRTINMTSGR TASVSGRIGSTSGS PG SN
Sbjct: 6 QGQHLVKQLGVLFRNIVYPASTSLLPPYSDRPVAAAQPSSSPGHLFHQRXXXXXXXXXXXPALDSSMSDHPPCGSRVQPLSIKTKISERLVSLSNIVCQKSKPLLPLHSSTPSHPCPTFSPFPAVTATPVFFPSPYAHHRELVQRQEERYPLFDRPFPLDRLPEDVLPSVLAFLPAGELSGMRRVSQTFLQEVDHHGEALWDSLCRCDFPSMASSPTAAAGVWGYSRRPVPFAINSSARLRTTPLKSLAAIRQQRHHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQQSSRTINMTSGRGTTASVSGRIGSTSGSAPGWSN 326
BLAST of mRNA_Ecto-sp9_F_contig1087.755.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE) HSP 1 Score: 337 bits (864), Expect = 1.090e-105 Identity = 224/438 (51.14%), Postives = 266/438 (60.73%), Query Frame = 1
Query: 619 QERHPLFDRPFPLDRLPEDVLPNVLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRCDFPSMASSPTAATGVRENKHAYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWANKDPQKSSRTINMTSGRDDTASVSGRIGSTSGSFPGGSNXXXXXXXSGAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSAFRQESPS---------VLPRPPPTGNNDTAAVATASRSGERRTDDGGGCGEEVEAGADLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALRVLPHISHWGFQQ--APVRVGGXXXXXXXXHVVGSTSFGEEDVDDAVERQERIACLARSSLEALKCG 1899
++R PL+ PFPL +PEDV VL+FLPA ELS +RRAS+ FL D H D LW L RCDFPS+A+ PT N LS H QQYV NVM RA D+V NLR+N LR+ L ++TW P+ ++ T + ++ I +T G G + XXXXXX VIGLLSDLVTVPDPRIARALS+K R LS VVV ND V RR GLYT V FL LS ++P+ +LP P GN V + G+ R E GADLLP APE+PAPAGFLGYAVRLL+LRP HE LRWT L A+F+DLAVFET+EQAEVVRAR+ ++RLFYCALD P Q P P R +PHISHWGF A +GG + G E V DA+ERQERIAC ARSSL L+ G
Sbjct: 67 KQRQPLWS-PFPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLHTADRHADVLWGRLNRCDFPSVAA-PTDPAAQETN---CLSPH-QQYVKNVMRRAIDEVGNLRANHRLRESLDSFTWPIDWPRGNATT---------SGTIYSAISNTFGGGIDGRSSXXXXXXXXXVIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNPTPLAPLLLPLLLPPPRRIGN-----VPAGTEDGDGR-----------EEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEVVRARVPDRRLFYCALDHPGAQDEPCPIGGRSMPHISHWGFHGLLADSGLGGGEG-----EMPGVRDRAGETVGDALERQERIACFARSSLAFLQYG 468
BLAST of mRNA_Ecto-sp9_F_contig1087.755.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB01_9PHAE) HSP 1 Score: 299 bits (766), Expect = 2.220e-95 Identity = 150/169 (88.76%), Postives = 153/169 (90.53%), Query Frame = 1
Query: 1405 RTDDGGGCGEEVEAGADLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALRVLPHISHWGFQQAPVRVGGXXXXXXXXHVVGSTSFGEEDVDDAVERQERIACLARSSLEALKCGRQML 1911
RTDDGGG EEVEAGA+LLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVF+TSEQAEVVRARMANQR FYCALDRPRGQGHPSPA LRVLPHISHWGFQQAPVRVGG H VGSTSFGEEDVD AV RQE+IACLARSSLEALKCGR ML
Sbjct: 2 RTDDGGGRREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFKTSEQAEVVRARMANQRRFYCALDRPRGQGHPSPAVLRVLPHISHWGFQQAPVRVGGGGGGRGGEHAVGSTSFGEEDVDAAVARQEKIACLARSSLEALKCGRHML 170
BLAST of mRNA_Ecto-sp9_F_contig1087.755.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI) HSP 1 Score: 221 bits (564), Expect = 1.070e-62 Identity = 165/433 (38.11%), Postives = 193/433 (44.57%), Query Frame = 1
Query: 622 ERHPLFDRPFPLDRLPEDVLPNVLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRCDFPSMASSPTAATGVRENKHAYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWANKDPQKSSRTINMTSGRDDTASVSGRIGSTSGSFPGGSNXXXXXXXSGAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSAFRQESPS-----VLPRPPPTGNNDTAAVATASRSGERRTDDGGGCGEEVEAGADLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALRVLPHISHWGFQQ--APVRVGGXXXXXXXXHVVGSTSFGEEDVDDAVERQERIACLARSSLEALKCG 1899
+R PL+ FPL +PEDV VL+FLPA ELS +RRAS+ FLQ D H D LW L RC+FPS+ S+PT N LS H + R LS VVV ND V RR G YT V FL LS ++P+ +LP P V + G+ R E GA+LLP APE+PAPAGFLGYAVRLL+LRP HE LRWT L A+F+DLAVFET+EQAE VRAR+ ++RLFYCALD P Q P P R LPHISHWGF A +GG V G E V DA+ERQER AC ARSSL L+ G
Sbjct: 67 QRQPLWSS-FPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLQTADRHADVLWGRLNRCEFPSV-SAPTGPAAQETN---CLSPHQR----------------------------------------------------------------------------------------------------------RAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNPTPLAPLLLPLLLPPQRR-IGIVPAGTEDGDGR-----------EEGANLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDEPCPPGGRSLPHISHWGFHGVLADSGLGGGEG-----EVPGVRDRAGETVGDALERQERTACFARSSLAFLQYG 371 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1087.755.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1087.755.1 >prot_Ecto-sp9_F_contig1087.755.1 ID=prot_Ecto-sp9_F_contig1087.755.1|Name=mRNA_Ecto-sp9_F_contig1087.755.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=638bp THRQCVCASFAVQLECSARSILLKPRHVPCPTHHRIDTLKTCSSNRNCLLback to top mRNA from alignment at Ecto-sp9_F_contig1087:2806..5785- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1087.755.1 ID=mRNA_Ecto-sp9_F_contig1087.755.1|Name=mRNA_Ecto-sp9_F_contig1087.755.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2980bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1087:2806..5785- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1087:2806..5785- >mRNA_Ecto-sp9_F_contig1087.755.1 ID=mRNA_Ecto-sp9_F_contig1087.755.1|Name=mRNA_Ecto-sp9_F_contig1087.755.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3828bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1087:2806..5785- (Ectocarpus species9 EcSCA_722f female)back to top |