mRNA_Ecto-sp9_F_contig10868.754.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10868.754.1
Unique NamemRNA_Ecto-sp9_F_contig10868.754.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10868.754.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10868contigEcto-sp9_F_contig10868:2182..2385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_000670.1
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928308.5114741-CDS-Ecto-sp9_F_contig10868:2181..23851622928308.5114741-CDS-Ecto-sp9_F_contig10868:2181..2385Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10868 2182..2385 -
1692277829.7407732-CDS-Ecto-sp9_F_contig10868:2181..23851692277829.7407732-CDS-Ecto-sp9_F_contig10868:2181..2385Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10868 2182..2385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10868.754.1prot_Ecto-sp9_F_contig10868.754.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10868 2182..2385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10868.754.1

>prot_Ecto-sp9_F_contig10868.754.1 ID=prot_Ecto-sp9_F_contig10868.754.1|Name=mRNA_Ecto-sp9_F_contig10868.754.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=68bp
VWSIGLDRTSLNQYTFYHTRVVLATPALHHNERSRRITPYNFSTKVCGGD
FHLSWSCAERSDSTTTE*
back to top

mRNA from alignment at Ecto-sp9_F_contig10868:2182..2385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10868.754.1 ID=mRNA_Ecto-sp9_F_contig10868.754.1|Name=mRNA_Ecto-sp9_F_contig10868.754.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10868:2182..2385- (Ectocarpus species9 EcSCA_722f female)
GTGTGGAGTATAGGGTTAGACCGAACATCCTTGAACCAATACACTTTTTA
TCACACACGTGTAGTTCTTGCCACACCAGCACTACACCACAACGAACGAT
CACGCCGCATAACCCCGTACAATTTTAGTACAAAAGTCTGCGGCGGCGAT
TTTCATTTATCCTGGTCTTGTGCTGAGCGCTCAGACTCAACAACGACGGA
GTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10868:2182..2385-

>mRNA_Ecto-sp9_F_contig10868.754.1 ID=mRNA_Ecto-sp9_F_contig10868.754.1|Name=mRNA_Ecto-sp9_F_contig10868.754.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10868:2182..2385- (Ectocarpus species9 EcSCA_722f female)
GTGTGGAGTATAGGGTTAGACCGAACATCCTTGAACCAATACACTTTTTA
TCACACACGTGTAGTTCTTGCCACACCAGCACTACACCACAACGAACGAT
CACGCCGCATAACCCCGTACAATTTTAGTACAAAAGTCTGCGGCGGCGAT
TTTCATTTATCCTGGTCTTGTGCTGAGCGCTCAGACTCAACAACGACGGA
GTGAGTGTGGAGTATAGGGTTAGACCGAACATCCTTGAACCAATACACTT
TTTATCACACACGTGTAGTTCTTGCCACACCAGCACTACACCACAACGAA
CGATCACGCCGCATAACCCCGTACAATTTTAGTACAAAAGTCTGCGGCGG
CGATTTTCATTTATCCTGGTCTTGTGCTGAGCGCTCAGACTCAACAACGA
CGGAGTGA
back to top