mRNA_Ecto-sp9_F_contig10865.753.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10865.753.1
Unique NamemRNA_Ecto-sp9_F_contig10865.753.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10865.753.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10865contigEcto-sp9_F_contig10865:1047..1473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928308.4492254-UTR-Ecto-sp9_F_contig10865:1046..10681622928308.4492254-UTR-Ecto-sp9_F_contig10865:1046..1068Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10865 1047..1068 +
1692277829.7228372-UTR-Ecto-sp9_F_contig10865:1046..10681692277829.7228372-UTR-Ecto-sp9_F_contig10865:1046..1068Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10865 1047..1068 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928308.4658399-CDS-Ecto-sp9_F_contig10865:1068..14731622928308.4658399-CDS-Ecto-sp9_F_contig10865:1068..1473Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10865 1069..1473 +
1692277829.7307847-CDS-Ecto-sp9_F_contig10865:1068..14731692277829.7307847-CDS-Ecto-sp9_F_contig10865:1068..1473Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10865 1069..1473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10865.753.1prot_Ecto-sp9_F_contig10865.753.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10865 1069..1473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10865.753.1

>prot_Ecto-sp9_F_contig10865.753.1 ID=prot_Ecto-sp9_F_contig10865.753.1|Name=mRNA_Ecto-sp9_F_contig10865.753.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=135bp
MFYSCFTELAPTARRLRLSMIVTPMRLPLDKVVEDRPWKCFPSAHNSTCV
YRVGQCVSPWCFILGLTVGGGEERHPAADSMLRVHGFFARACLKSVVVKA
KSLYPVGFRRSPLVWATACGDLWSGVCDRQCPRTL
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mRNA from alignment at Ecto-sp9_F_contig10865:1047..1473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10865.753.1 ID=mRNA_Ecto-sp9_F_contig10865.753.1|Name=mRNA_Ecto-sp9_F_contig10865.753.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=427bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10865:1047..1473+ (Ectocarpus species9 EcSCA_722f female)
GTGAGCGATCGACTTCCTGTTCATGTTTTACTCGTGCTTCACAGAATTAG
CACCTACAGCTCGTCGCCTGCGACTATCAATGATAGTGACTCCAATGAGA
CTGCCGCTGGACAAAGTCGTCGAAGACCGTCCCTGGAAATGTTTCCCCTC
TGCCCACAACAGTACATGTGTGTATCGCGTCGGGCAATGCGTGTCACCCT
GGTGTTTCATTTTGGGTTTGACGGTGGGGGGAGGAGAGGAGAGGCACCCT
GCCGCAGATTCTATGCTCAGGGTACACGGTTTTTTTGCACGTGCCTGTCT
CAAGTCGGTCGTGGTGAAGGCTAAATCGTTGTACCCTGTTGGATTTCGGC
GATCCCCGCTTGTTTGGGCGACGGCGTGTGGTGATCTTTGGTCGGGCGTT
TGCGATAGGCAGTGTCCGCGAACACTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10865:1047..1473+

>mRNA_Ecto-sp9_F_contig10865.753.1 ID=mRNA_Ecto-sp9_F_contig10865.753.1|Name=mRNA_Ecto-sp9_F_contig10865.753.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10865:1047..1473+ (Ectocarpus species9 EcSCA_722f female)
ATGTTTTACTCGTGCTTCACAGAATTAGCACCTACAGCTCGTCGCCTGCG
ACTATCAATGATAGTGACTCCAATGAGACTGCCGCTGGACAAAGTCGTCG
AAGACCGTCCCTGGAAATGTTTCCCCTCTGCCCACAACAGTACATGTGTG
TATCGCGTCGGGCAATGCGTGTCACCCTGGTGTTTCATTTTGGGTTTGAC
GGTGGGGGGAGGAGAGGAGAGGCACCCTGCCGCAGATTCTATGCTCAGGG
TACACGGTTTTTTTGCACGTGCCTGTCTCAAGTCGGTCGTGGTGAAGGCT
AAATCGTTGTACCCTGTTGGATTTCGGCGATCCCCGCTTGTTTGGGCGAC
GGCGTGTGGTGATCTTTGGTCGGGCGTTTGCGATAGGCAGTGTCCGCGAA
CACTGATGTTTTACTCGTGCTTCACAGAATTAGCACCTACAGCTCGTCGC
CTGCGACTATCAATGATAGTGACTCCAATGAGACTGCCGCTGGACAAAGT
CGTCGAAGACCGTCCCTGGAAATGTTTCCCCTCTGCCCACAACAGTACAT
GTGTGTATCGCGTCGGGCAATGCGTGTCACCCTGGTGTTTCATTTTGGGT
TTGACGGTGGGGGGAGGAGAGGAGAGGCACCCTGCCGCAGATTCTATGCT
CAGGGTACACGGTTTTTTTGCACGTGCCTGTCTCAAGTCGGTCGTGGTGA
AGGCTAAATCGTTGTACCCTGTTGGATTTCGGCGATCCCCGCTTGTTTGG
GCGACGGCGTGTGGTGATCTTTGGTCGGGCGTTTGCGATAGGCAGTGTCC
GCGAACACTG
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