mRNA_Ecto-sp9_F_contig10862.751.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10862.751.1
Unique NamemRNA_Ecto-sp9_F_contig10862.751.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10862.751.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10862contigEcto-sp9_F_contig10862:2410..3219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size810
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10862.751.1prot_Ecto-sp9_F_contig10862.751.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10862 2524..2964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928308.3163-UTR-Ecto-sp9_F_contig10862:2409..25231622928308.3163-UTR-Ecto-sp9_F_contig10862:2409..2523Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10862 2410..2523 +
1692277829.6599631-UTR-Ecto-sp9_F_contig10862:2409..25231692277829.6599631-UTR-Ecto-sp9_F_contig10862:2409..2523Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10862 2410..2523 +
1622928308.3479595-UTR-Ecto-sp9_F_contig10862:2964..32191622928308.3479595-UTR-Ecto-sp9_F_contig10862:2964..3219Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10862 2965..3219 +
1692277829.6851158-UTR-Ecto-sp9_F_contig10862:2964..32191692277829.6851158-UTR-Ecto-sp9_F_contig10862:2964..3219Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10862 2965..3219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928308.3306522-CDS-Ecto-sp9_F_contig10862:2523..29641622928308.3306522-CDS-Ecto-sp9_F_contig10862:2523..2964Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10862 2524..2964 +
1692277829.6696997-CDS-Ecto-sp9_F_contig10862:2523..29641692277829.6696997-CDS-Ecto-sp9_F_contig10862:2523..2964Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10862 2524..2964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10862.751.1

>prot_Ecto-sp9_F_contig10862.751.1 ID=prot_Ecto-sp9_F_contig10862.751.1|Name=mRNA_Ecto-sp9_F_contig10862.751.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=147bp
MVLFMEHARNTLLALRTQVFLIDGWVLPPHKCFLLYFSSCRRRPKFAGQQ
KKDSTQEIKHGSHCEIESPQTPTEKRPAIVLNTIHSGQRLSVCKNVLRRR
GAGGRRRVCARTNVPPLPFKQPTLSPPPHQLDIADRPKACVGAGEW*
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mRNA from alignment at Ecto-sp9_F_contig10862:2410..3219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10862.751.1 ID=mRNA_Ecto-sp9_F_contig10862.751.1|Name=mRNA_Ecto-sp9_F_contig10862.751.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=810bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10862:2410..3219+ (Ectocarpus species9 EcSCA_722f female)
AAAAAACCCGGGCAACAAGCTTGTTCCTTTTTCACGCTCGGACGTGAACG
AGAAAAAAAATCAGCGCGGTAAAAAGTTACATGCCGGCGCCTACAATAGA
TCCCCAAAAAAACTATGGTACTCTTCATGGAACACGCCCGCAATACGCTC
CTTGCTCTACGCACGCAGGTGTTTTTGATTGATGGGTGGGTGCTTCCCCC
GCACAAATGCTTCCTGCTTTATTTTTCCTCTTGTCGTAGGCGCCCAAAAT
TCGCAGGACAACAAAAAAAAGACAGCACACAAGAAATAAAGCACGGAAGC
CATTGTGAAATCGAATCTCCTCAAACACCCACCGAAAAAAGACCCGCTAT
TGTACTCAACACGATCCACTCGGGACAACGGCTTTCGGTTTGCAAAAACG
TCCTTCGCAGGAGGGGAGCGGGGGGGCGCCGTCGAGTGTGTGCAAGGACG
AACGTACCCCCGCTCCCCTTCAAGCAACCTACACTATCGCCGCCTCCTCA
CCAACTAGATATTGCAGATAGACCGAAAGCTTGCGTGGGAGCGGGGGAAT
GGTAAAGAGAGAGGCGGCAAAGAGGGCATAATAGCCAAAAGAGCCGAAAG
CGAAACGCGGCGAAATAAAATCGGCCTGGCTCTATTAATCCCGCGGCAGA
CAAGACATGCAGATAGATACAGCAGCGGCTGGTTCTCAACGTGCAGGCAG
GCCGCCGAGAGTTCCCACCAATCGCTGGTGCCGTTCATTGTGTTTGTGTT
AAACTTTCGCTCTTCCCTACGGTACTCGCATTCAATCGACACGCGCCCTC
CCTACCCCTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10862:2410..3219+

>mRNA_Ecto-sp9_F_contig10862.751.1 ID=mRNA_Ecto-sp9_F_contig10862.751.1|Name=mRNA_Ecto-sp9_F_contig10862.751.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10862:2410..3219+ (Ectocarpus species9 EcSCA_722f female)
ATGGTACTCTTCATGGAACACGCCCGCAATACGCTCCTTGCTCTACGCAC
GCAGGTGTTTTTGATTGATGGGTGGGTGCTTCCCCCGCACAAATGCTTCC
TGCTTTATTTTTCCTCTTGTCGTAGGCGCCCAAAATTCGCAGGACAACAA
AAAAAAGACAGCACACAAGAAATAAAGCACGGAAGCCATTGTGAAATCGA
ATCTCCTCAAACACCCACCGAAAAAAGACCCGCTATTGTACTCAACACGA
TCCACTCGGGACAACGGCTTTCGGTTTGCAAAAACGTCCTTCGCAGGAGG
GGAGCGGGGGGGCGCCGTCGAGTGTGTGCAAGGACGAACGTACCCCCGCT
CCCCTTCAAGCAACCTACACTATCGCCGCCTCCTCACCAACTAGATATTG
CAGATAGACCGAAAGCTTGCGTGGGAGCGGGGGAATGGTAAATGGTACTC
TTCATGGAACACGCCCGCAATACGCTCCTTGCTCTACGCACGCAGGTGTT
TTTGATTGATGGGTGGGTGCTTCCCCCGCACAAATGCTTCCTGCTTTATT
TTTCCTCTTGTCGTAGGCGCCCAAAATTCGCAGGACAACAAAAAAAAGAC
AGCACACAAGAAATAAAGCACGGAAGCCATTGTGAAATCGAATCTCCTCA
AACACCCACCGAAAAAAGACCCGCTATTGTACTCAACACGATCCACTCGG
GACAACGGCTTTCGGTTTGCAAAAACGTCCTTCGCAGGAGGGGAGCGGGG
GGGCGCCGTCGAGTGTGTGCAAGGACGAACGTACCCCCGCTCCCCTTCAA
GCAACCTACACTATCGCCGCCTCCTCACCAACTAGATATTGCAGATAGAC
CGAAAGCTTGCGTGGGAGCGGGGGAATGGTAA
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