mRNA_Ecto-sp9_F_contig1086.748.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1086.748.1
Unique NamemRNA_Ecto-sp9_F_contig1086.748.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1086.748.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1086contigEcto-sp9_F_contig1086:9639..10270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size632
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1086.748.1prot_Ecto-sp9_F_contig1086.748.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1086 9786..10133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.7070405-UTR-Ecto-sp9_F_contig1086:9638..97851622928307.7070405-UTR-Ecto-sp9_F_contig1086:9638..9785Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1086 9639..9785 +
1692277829.411735-UTR-Ecto-sp9_F_contig1086:9638..97851692277829.411735-UTR-Ecto-sp9_F_contig1086:9638..9785Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1086 9639..9785 +
1622928307.7374318-UTR-Ecto-sp9_F_contig1086:10133..102701622928307.7374318-UTR-Ecto-sp9_F_contig1086:10133..10270Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1086 10134..10270 +
1692277829.4312813-UTR-Ecto-sp9_F_contig1086:10133..102701692277829.4312813-UTR-Ecto-sp9_F_contig1086:10133..10270Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1086 10134..10270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.72375-CDS-Ecto-sp9_F_contig1086:9785..101331622928307.72375-CDS-Ecto-sp9_F_contig1086:9785..10133Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1086 9786..10133 +
1692277829.4215531-CDS-Ecto-sp9_F_contig1086:9785..101331692277829.4215531-CDS-Ecto-sp9_F_contig1086:9785..10133Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1086 9786..10133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1086.748.1

>prot_Ecto-sp9_F_contig1086.748.1 ID=prot_Ecto-sp9_F_contig1086.748.1|Name=mRNA_Ecto-sp9_F_contig1086.748.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=116bp
MMWNSFPTTASTHFAPSTHHSGQCPPKAIDTVKEYSDPYATCLLRRTFFR
RDSDPNVAHNDQHYENIVLSYSSSSSFVAGCVRTQNTRMRVPLLYIVAIR
MLGSSMKLIQIDETL*
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mRNA from alignment at Ecto-sp9_F_contig1086:9639..10270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1086.748.1 ID=mRNA_Ecto-sp9_F_contig1086.748.1|Name=mRNA_Ecto-sp9_F_contig1086.748.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=632bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1086:9639..10270+ (Ectocarpus species9 EcSCA_722f female)
ATTCATTCATTCCCACATGTGAACAAGCACAAGAACTGGAAGCGGCACTG
CTCAAACGAGGTCCGTTGAATCCCCCAACAACTAACTCAGAATATCACAG
AAGCCCCGCAGACTGCGACTAACGTGTGAAGAGCACTCGGCCACAAGATG
ATGTGGAACTCGTTTCCCACAACGGCCAGCACACACTTCGCACCGTCCAC
GCACCACTCTGGCCAATGCCCCCCGAAGGCCATAGACACAGTCAAAGAGT
ACTCAGATCCTTATGCGACGTGCTTGCTACGGCGCACGTTTTTCCGACGA
GACTCAGATCCAAATGTTGCTCACAATGACCAACACTATGAAAATATTGT
CCTATCATATTCGTCAAGTTCCAGTTTCGTAGCGGGGTGCGTACGTACAC
AAAACACACGTATGCGTGTACCGCTTTTGTACATCGTAGCTATTCGTATG
CTCGGTAGCTCCATGAAACTCATTCAAATAGACGAGACCTTATGAAACGG
TAACCTCGGGCTGATTATAGTGCATACAACAACTGCCCGCAAACACAGCC
CGCCCAACAGACGCCAGTACGCTCCGAGATGCAGCGGTACAGTGGCTCTC
TGGTCGTGAAACGTTTGGAGGACAGGCCGCAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1086:9639..10270+

>mRNA_Ecto-sp9_F_contig1086.748.1 ID=mRNA_Ecto-sp9_F_contig1086.748.1|Name=mRNA_Ecto-sp9_F_contig1086.748.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1086:9639..10270+ (Ectocarpus species9 EcSCA_722f female)
ATGATGTGGAACTCGTTTCCCACAACGGCCAGCACACACTTCGCACCGTC
CACGCACCACTCTGGCCAATGCCCCCCGAAGGCCATAGACACAGTCAAAG
AGTACTCAGATCCTTATGCGACGTGCTTGCTACGGCGCACGTTTTTCCGA
CGAGACTCAGATCCAAATGTTGCTCACAATGACCAACACTATGAAAATAT
TGTCCTATCATATTCGTCAAGTTCCAGTTTCGTAGCGGGGTGCGTACGTA
CACAAAACACACGTATGCGTGTACCGCTTTTGTACATCGTAGCTATTCGT
ATGCTCGGTAGCTCCATGAAACTCATTCAAATAGACGAGACCTTATGAAT
GATGTGGAACTCGTTTCCCACAACGGCCAGCACACACTTCGCACCGTCCA
CGCACCACTCTGGCCAATGCCCCCCGAAGGCCATAGACACAGTCAAAGAG
TACTCAGATCCTTATGCGACGTGCTTGCTACGGCGCACGTTTTTCCGACG
AGACTCAGATCCAAATGTTGCTCACAATGACCAACACTATGAAAATATTG
TCCTATCATATTCGTCAAGTTCCAGTTTCGTAGCGGGGTGCGTACGTACA
CAAAACACACGTATGCGTGTACCGCTTTTGTACATCGTAGCTATTCGTAT
GCTCGGTAGCTCCATGAAACTCATTCAAATAGACGAGACCTTATGA
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