mRNA_Ecto-sp9_F_contig10856.744.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10856.744.1
Unique NamemRNA_Ecto-sp9_F_contig10856.744.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10856.744.1 vs.
Match: DUF4470 (domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K075_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 5.270e-55
Identity = 107/120 (89.17%), Postives = 109/120 (90.83%), Query Frame = 2 
Query:    2 FMPNMSLSPCQLELADLDGPARFDLIDSSYLADNLGILNVVMATSPLLKPSPHAVVRTDLRRSGPARKRLTRAKDVEAAVAAQAEAEKSVEGLDAKGNKKKINKKETKMAAAAYAALTDE 361
            FMPNMSLSPCQLELADLDGPARFDLIDSSYLA+NLGILNVVMATSPLLKPSPHAVVRTDLRRSGPARKRLTRAKDVEAA+AAQAEAEKSVEGLDAKG K          AAAAYAALTDE
Sbjct:  483 FMPNMSLSPCQLELADLDGPARFDLIDSSYLANNLGILNVVMATSPLLKPSPHAVVRTDLRRSGPARKRLTRAKDVEAAIAAQAEAEKSVEGLDAKGKKXXXXXXXXXXAAAAYAALTDE 602
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BLAST of mRNA_Ecto-sp9_F_contig10856.744.1 vs.
Match: MYND (finger domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D05560F)

HSP 1 Score: 56.2 bits (134), Expect = 1.030e-6
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 2 
Query:   53 DGPARFDLIDSSYLADNLGILNVVMATSPLLKPSPHAVVRTDL 181
            +GPA FD++D+S L+D+LG LNVV+AT+PL+K  P A V T+L
Sbjct:  358 EGPAAFDMVDTSNLSDHLGTLNVVIATAPLMKQKPWATVYTEL 400
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BLAST of mRNA_Ecto-sp9_F_contig10856.744.1 vs.
Match: DUF4470 (domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WS87_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 1.030e-6
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 2 
Query:   14 MSLSPCQLELADLDG---------PARFDLIDSSYLADNLGILNVVMATSPLLKPSPHAVVRTD 178
            + L+P +L+L D            P  FD+ID+S L D++G+L++++AT+PLLKP  HAV+ TD
Sbjct:  141 LDLAPLKLDLEDFGSENSTATRLAPTTFDVIDTSNLTDHIGLLSILVATAPLLKPELHAVLETD 204
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BLAST of mRNA_Ecto-sp9_F_contig10856.744.1 vs.
Match: Uncharacterized (protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1ISJ4_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 3.360e-6
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:   44 ADLDGPARFDLIDSSYLADNLGILNVVMATSPLLKPSPHAVVRTD 178
            A    P  FD+ID+S L D+LG+LN+++AT PLLKP  HA++ TD
Sbjct:  366 ASRPAPTAFDVIDTSNLTDHLGLLNILVATGPLLKPVLHAILHTD 410
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BLAST of mRNA_Ecto-sp9_F_contig10856.744.1 vs.
Match: MYND-type (domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S001_9APHY)

HSP 1 Score: 53.9 bits (128), Expect = 6.600e-6
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 2 
Query:   32 QLELADLDGPARFDLIDSSYLADNLGILNVVMATSPLLKPSPHAVVRTD 178
            Q E AD   P RFD+ID+S +AD LG+LN+ +AT+PLL  +P +V+ T+
Sbjct:  362 QEEYADFCAPTRFDVIDTSNVADYLGLLNIFLATAPLLMKAPSSVLYTE 410
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BLAST of mRNA_Ecto-sp9_F_contig10856.744.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ6_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 8.700e-6
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:   17 SLSPCQLELADLDGPARFDLIDSSYLADNLGILNVVMATSPLLKPSPHAVVRTDL 181
            S+ P  L       P +FD+I++S LA++LG +NV++A+SPLLK  PHAV+ T L
Sbjct:  323 SVQPLHLRAGIFSYPPQFDVINTSNLAEHLGTVNVLVASSPLLKTLPHAVLLTSL 377
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10856.744.1 vs.
Match: Uncharacterized (protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W8E5_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 2.880e-5
Identity = 21/39 (53.85%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:   59 PARFDLIDSSYLADNLGILNVVMATSPLLKPSPHAVVRT 175
            P +FD+I+S+ L D +G+LNV+ AT+PLLKP+P +V+ T
Sbjct:  301 PRKFDVIESANLVDTIGLLNVLSATAPLLKPAPRSVINT 339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10856.744.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
DUF44705.270e-5589.17domain-containing protein (Fragment) n=2 Tax=Ectoc... [more]
MYND1.030e-658.14finger domain-containing protein n=1 Tax=Hirsutell... [more]
DUF44701.030e-642.19domain-containing protein n=1 Tax=Blyttiomyces hel... [more]
Uncharacterized3.360e-653.33protein n=1 Tax=Blyttiomyces helicus TaxID=388810 ... [more]
MYND-type6.600e-651.02domain-containing protein n=1 Tax=Ganoderma sinens... [more]
Uncharacterized8.700e-647.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.880e-553.85protein n=1 Tax=Blyttiomyces helicus TaxID=388810 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10856contigEcto-sp9_F_contig10856:736..2650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size361
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10856.744.1prot_Ecto-sp9_F_contig10856.744.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10856 736..2646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.47561-CDS-Ecto-sp9_F_contig10856:735..8321622928307.47561-CDS-Ecto-sp9_F_contig10856:735..832Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10856 736..832 -
1692277829.29877-CDS-Ecto-sp9_F_contig10856:735..8321692277829.29877-CDS-Ecto-sp9_F_contig10856:735..832Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10856 736..832 -
1622928307.4863503-CDS-Ecto-sp9_F_contig10856:1632..18301622928307.4863503-CDS-Ecto-sp9_F_contig10856:1632..1830Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10856 1633..1830 -
1692277829.3073807-CDS-Ecto-sp9_F_contig10856:1632..18301692277829.3073807-CDS-Ecto-sp9_F_contig10856:1632..1830Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10856 1633..1830 -
1622928307.4992423-CDS-Ecto-sp9_F_contig10856:2584..26461622928307.4992423-CDS-Ecto-sp9_F_contig10856:2584..2646Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10856 2585..2646 -
1692277829.3164587-CDS-Ecto-sp9_F_contig10856:2584..26461692277829.3164587-CDS-Ecto-sp9_F_contig10856:2584..2646Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10856 2585..2646 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.5193362-UTR-Ecto-sp9_F_contig10856:2646..26501622928307.5193362-UTR-Ecto-sp9_F_contig10856:2646..2650Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10856 2647..2650 -
1692277829.3255708-UTR-Ecto-sp9_F_contig10856:2646..26501692277829.3255708-UTR-Ecto-sp9_F_contig10856:2646..2650Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10856 2647..2650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10856.744.1

>prot_Ecto-sp9_F_contig10856.744.1 ID=prot_Ecto-sp9_F_contig10856.744.1|Name=mRNA_Ecto-sp9_F_contig10856.744.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
MPNMSLSPCQLELADLDGPARFDLIDSSYLADNLGILNVVMATSPLLKPS
PHAVVRTDLRRSGPARKRLTRAKDVEAAVAAQAEAEKSVEGLDAKGNKKK
INKKETKMAAAAYAALTDE
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mRNA from alignment at Ecto-sp9_F_contig10856:736..2650-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10856.744.1 ID=mRNA_Ecto-sp9_F_contig10856.744.1|Name=mRNA_Ecto-sp9_F_contig10856.744.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1915bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10856:736..2650- (Ectocarpus species9 EcSCA_722f female)
CTTCATGCCCAACATGTCTCTCTCCCCATGTCAACTGGAGCTTGCCGATC
TGGACGGCCCCGCCAGGTGACAAACAGGGGTGCCGTACGTTGCTTGCTTG
CCCGGCTCTCCCCCCCCCCCCCCCCCCCCCCAAAACAAGGGGGGGGGGGG
GGGGCCGGGGGGGAGGCCTTTTTTCTTTCGGGGTTTTCTGTCGTGGGCAA
CANNNNNNNNNNCCCCCCCGGGGCAGACGAGGGGGGGGGCGCCCTCCTCT
GTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTACAAATCAAGGCGG
GAGAGGGGTTACAGGGAGAGATGCATTTTTACTTCGGATGTTTCCTGTCG
TGAGCACAATTGATGTTTGTGTTGTGCATCCAATTCCATTGTTGTCGTTC
ACTTGGAACAGTGGCACACAGAATCACCAGCTTACGGCACGTGCACTTGG
TGCCGAGGTGGGTTTGTCGACTTCAACGTTGTTACAGTTTGCGACAAGAG
CAGGTCTCTTGGCCTTTGCGGACCACCTTTGCCGCGAGTTGGTCTTTCGG
GTTTTCTAGGTCTATGCGTGCGCTGTCAAGAATCCTGCGGCCTTCATGGC
ACCTTCTCCAGACAGGGTTGGTGTGTGGTTATTAAGTGGTACGGCCTCTA
CCGAATCCCGTCTCTCCGTCCGTTGCTCCCCCCTCCGAGGGCAGGGAGCG
AGGCACCGACCAAGCACGACCACCCACACAGCGCACATCAATAACCGCTT
TGAACCCGTCTTCCGCAACCCGACCGACAGCCGAAACCAAACTTGCAACC
CCTTACCCCCCCCCCCCCAGGTTTGACTTGATCGACTCCTCCTACCTGGC
CGACAACCTCGGCATACTTAACGTGGTGATGGCGACTTCGCCCCTGCTCA
AGCCGTCCCCGCACGCCGTGGTGCGCACCGACCTGAGGAGGAGCGGCCCC
GCCAGGAAGCGGTTGACCCGCGCCAAGGACGTGGAGGCTGCCGTTGCTGC
CCAGGCCGAGGCCGAGAAGTGAGAGGGAAAGGGGGGGGGGGGGGGGGGGG
GGGGCTCTTTTTTTTTTCTTGGCTGTGGGGGTGACACACAGTCCCCCCGT
TTTTTTGAAGAGGGGGCCTGTTTNNNNNNNNNNGGTTGGCCCCCGGCAGG
GGGGGGGGGGGGTGCGGTGCTGCCCCGGGGGGGCGGGGGAGGGGGGGGGG
AAGGGGGGGGGGGGGGGGGGGGGATGCTCTTATGTTTTGCATGCCTTAGT
GGTTAGACCAATGTCCACGCGTCCTTGAGAAGACGGGGCATTGTTCCCAC
AGGACCGATCACCGATGGCCTACCGTTCCTTTCTACTTTGCCGATGGTGG
CTCAAAAAATAGGGGAAGGGGGGCGGAGGGATTATGCCCCAAGCCCTGAG
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATTTTCCCCGCGCGGGGCT
ACAAACGGGGAGAAAAAAACGGGGTTTTTTTTGCCCCCCAAAGGGTGGCA
CGCATCCNNNNNNNNNNCGGACGGCCGAGGGTGGGAGAAAAAGGGGGGGG
GGGGGGGGGGGGGGATTAGGCCCCCGGGCGGGGGGGGGGGGGGGGGGCGT
GATGAGCGATTTCCTCCGTCCGGGACTACAACGCGGAAGACAAGTACGAC
TGTTTGTTGCGCACCCAACGTGTAGCGCCATCCCGAGTGCTCTTTGGCGA
TGGGTTTCTACTCCAGGGGGATGCCTCTCGCATCGCCGAGATGCATGCTT
CTCCTGTACTTCGATACTAACGCCAATCCATCCGACGCTGCTGTGGCACG
CGCGCGCGCGTGAGTCAGGTCCGTGGAGGGCTTGGACGCCAAGGGAAATA
AGAAGAAAATCAACAAGAAGGAGACCAAGATGGCCGCCGCTGCTTACGCC
GCTCTGACGGACGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10856:736..2650-

>mRNA_Ecto-sp9_F_contig10856.744.1 ID=mRNA_Ecto-sp9_F_contig10856.744.1|Name=mRNA_Ecto-sp9_F_contig10856.744.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10856:736..2650- (Ectocarpus species9 EcSCA_722f female)
ATGCCCAACATGTCTCTCTCCCCATGTCAACTGGAGCTTGCCGATCTGGA
CGGCCCCGCCAGATGCCCAACATGTCTCTCTCCCCATGTCAACTGGAGCT
TGCCGATCTGGACGGCCCCGCCAGGTTTGACTTGATCGACTCCTCCTACC
TGGCCGACAACCTCGGCATACTTAACGTGGTGATGGCGACTTCGCCCCTG
CTCAAGCCGTCCCCGCACGCCGTGGTGCGCACCGACCTGAGGAGGAGCGG
CCCCGCCAGGAAGCGGTTGACCCGCGCCAAGGACGTGGAGGCTGCCGTTG
CTGCCCAGGCCGAGGCCGAGAAGTTTGACTTGATCGACTCCTCCTACCTG
GCCGACAACCTCGGCATACTTAACGTGGTGATGGCGACTTCGCCCCTGCT
CAAGCCGTCCCCGCACGCCGTGGTGCGCACCGACCTGAGGAGGAGCGGCC
CCGCCAGGAAGCGGTTGACCCGCGCCAAGGACGTGGAGGCTGCCGTTGCT
GCCCAGGCCGAGGCCGAGAAGTCCGTGGAGGGCTTGGACGCCAAGGGAAA
TAAGAAGAAAATCAACAAGAAGGAGACCAAGATGGCCGCCGCTGCTTACG
CCGCTCTGACGGACGAGGTCCGTGGAGGGCTTGGACGCCAAGGGAAATAA
GAAGAAAATCAACAAGAAGGAGACCAAGATGGCCGCCGCTGCTTACGCCG
CTCTGACGGACGAG
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